Wall clock time and date at job start Sat Apr 11 2020 05:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 110.45319 * 2 1 4 4 N 1.46499 * 109.47094 * 300.69927 * 3 2 1 5 5 S 1.65597 * 119.99926 * 165.27799 * 4 3 2 6 6 O 1.42096 * 106.40195 * 178.26439 * 5 4 3 7 7 O 1.42108 * 106.40105 * 311.18495 * 5 4 3 8 8 C 1.76199 * 107.22117 * 64.72196 * 5 4 3 9 9 C 1.38235 * 120.00343 * 269.72948 * 8 5 4 10 10 C 1.38233 * 120.00233 * 179.78690 * 9 8 5 11 11 C 1.38233 * 120.00139 * 0.43835 * 10 9 8 12 12 C 1.50696 * 120.00246 * 179.83303 * 11 10 9 13 13 C 1.50698 * 109.47297 * 269.98152 * 12 11 10 14 14 H 1.08002 * 119.99945 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99740 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00182 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99581 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46890 * 90.00020 * 17 15 13 19 19 H 1.48500 * 109.46886 * 209.99635 * 17 15 13 20 20 H 1.48501 * 109.47157 * 329.99763 * 17 15 13 21 21 C 1.38244 * 119.99771 * 359.81595 * 11 10 9 22 22 C 1.38230 * 119.99734 * 359.97171 * 21 11 10 23 23 C 1.54506 * 110.51155 * 122.60166 * 2 1 3 24 24 C 1.54486 * 104.06350 * 118.78565 * 23 2 1 25 25 O 1.44428 * 104.80215 * 23.97973 * 24 23 2 26 26 C 1.44786 * 105.29344 * 319.45729 * 25 24 23 27 27 H 1.09001 * 109.46873 * 59.30560 * 1 2 3 28 28 H 1.09000 * 109.46792 * 179.29925 * 1 2 3 29 29 H 1.08993 * 109.47196 * 299.29541 * 1 2 3 30 30 H 1.09007 * 109.47007 * 180.69868 * 3 2 1 31 31 H 1.08995 * 109.47080 * 60.70112 * 3 2 1 32 32 H 0.97001 * 119.99790 * 344.99588 * 4 3 2 33 33 H 1.08000 * 119.99703 * 359.97438 * 9 8 5 34 34 H 1.08007 * 119.99861 * 180.27620 * 10 9 8 35 35 H 1.08998 * 109.46962 * 29.98211 * 12 11 10 36 36 H 1.09004 * 109.46719 * 149.97840 * 12 11 10 37 37 H 0.96998 * 119.99754 * 179.97438 * 16 15 13 38 38 H 1.07996 * 119.99507 * 180.02562 * 21 11 10 39 39 H 1.08005 * 119.99989 * 179.97438 * 22 21 11 40 40 H 1.09007 * 110.51277 * 237.42811 * 23 2 1 41 41 H 1.08994 * 110.51441 * 0.02562 * 23 2 1 42 42 H 1.09003 * 110.37115 * 142.80602 * 24 23 2 43 43 H 1.08995 * 110.37358 * 265.03487 * 24 23 2 44 44 H 1.09010 * 110.42203 * 281.77654 * 26 25 24 45 45 H 1.09003 * 110.48760 * 159.32777 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0646 1.4336 0.0000 4 7 1.5746 2.1375 -1.1876 5 16 1.6821 3.7877 -1.2752 6 8 1.1681 4.1563 -2.5477 7 8 1.1617 4.2892 -0.0517 8 6 3.3954 4.1986 -1.2927 9 6 4.0632 4.4290 -0.1044 10 6 5.4083 4.7470 -0.1178 11 6 6.0838 4.8436 -1.3200 12 6 7.5494 5.1940 -1.3349 13 6 7.7073 6.6905 -1.4152 14 1 6.8337 7.3245 -1.4522 15 6 8.9670 7.2503 -1.4425 16 7 10.0307 6.4783 -1.3979 17 14 9.1627 9.1054 -1.5427 18 1 9.2111 9.6728 -0.1713 19 1 10.4222 9.4322 -2.2584 20 1 8.0106 9.6857 -2.2783 21 6 5.4148 4.6184 -2.5087 22 6 4.0707 4.2961 -2.4949 23 6 2.0714 -0.7797 1.2191 24 6 2.8787 -1.9393 0.5946 25 8 3.2436 -1.4684 -0.7210 26 6 2.0714 -0.7796 -1.2188 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3633 -1.0276 -0.0126 29 1 -0.3633 0.5028 0.8962 30 1 3.1545 1.4149 -0.0125 31 1 1.7204 1.9497 0.8962 32 1 1.1909 1.6367 -1.9244 33 1 3.5345 4.3575 0.8347 34 1 5.9310 4.9226 0.8109 35 1 8.0198 4.8275 -0.4225 36 1 8.0247 4.7315 -2.1999 37 1 10.9170 6.8721 -1.4174 38 1 5.9427 4.6935 -3.4479 39 1 3.5479 4.1205 -3.4236 40 1 2.7200 -0.1439 1.8218 41 1 1.2491 -1.1656 1.8216 42 1 3.7716 -2.1418 1.1863 43 1 2.2618 -2.8349 0.5214 44 1 1.3296 -1.4967 -1.5705 45 1 2.3443 -0.0913 -2.0188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885012086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:47 Heat of formation + Delta-G solvation = -110.578620 kcal Electronic energy + Delta-G solvation = -27388.007090 eV Core-core repulsion = 23496.762376 eV Total energy + Delta-G solvation = -3891.244715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.26118 -38.79943 -37.17845 -36.16128 -35.78109 -33.67960 -32.95101 -31.55706 -30.57644 -29.94568 -27.43432 -26.97209 -25.92868 -23.72622 -22.91603 -22.34445 -20.90616 -19.94519 -19.44387 -17.94824 -17.42977 -16.59624 -16.44015 -16.19000 -16.02093 -15.47014 -15.20762 -15.04125 -14.57232 -14.37058 -14.23389 -13.81000 -13.56514 -13.35336 -13.17421 -13.10355 -12.83404 -12.30247 -12.23590 -12.19540 -12.02837 -11.95055 -11.83717 -11.70282 -11.48478 -11.36060 -11.13706 -10.97358 -10.92865 -10.90562 -10.52888 -10.48122 -10.07493 -9.81145 -9.69973 -9.56534 -8.58858 -8.53660 -8.38373 -6.16935 -4.21999 0.48244 1.32694 1.79879 3.03202 3.24442 3.30992 3.35404 3.61079 3.74341 4.04843 4.13588 4.14786 4.37568 4.38869 4.52183 4.72596 4.75324 4.81008 5.10198 5.16088 5.19738 5.22723 5.23366 5.24761 5.28591 5.38851 5.40151 5.51516 5.55027 5.67360 5.72568 5.76076 5.79814 5.84622 5.91466 6.25161 6.32995 6.43933 6.50527 6.74846 6.84115 6.91268 7.29645 7.43503 7.59423 7.78132 8.13432 8.82797 9.42976 10.93107 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015681 B = 0.002821 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.173829 B = 9924.318004 C =10980.200412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C 0.131 3.869 4 N -1.120 6.120 5 S 2.699 3.301 6 O -0.966 6.966 7 O -0.964 6.964 8 C -0.704 4.704 9 C -0.025 4.025 10 C -0.145 4.145 11 C 0.028 3.972 12 C 0.039 3.961 13 C -0.518 4.518 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.899 3.101 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.145 4.145 22 C -0.021 4.021 23 C -0.146 4.146 24 C 0.044 3.956 25 O -0.371 6.371 26 C 0.049 3.951 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.414 0.586 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.166 -17.115 3.702 25.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 C 0.005 3.995 4 N -0.880 5.880 5 S 2.792 3.208 6 O -0.956 6.956 7 O -0.954 6.954 8 C -0.794 4.794 9 C -0.044 4.044 10 C -0.164 4.164 11 C 0.027 3.973 12 C 0.002 3.998 13 C -0.556 4.556 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.726 3.274 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.164 4.164 22 C -0.041 4.041 23 C -0.185 4.185 24 C -0.033 4.033 25 O -0.289 6.289 26 C -0.028 4.028 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.249 0.751 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.404 -16.457 3.721 24.968 hybrid contribution 0.712 0.751 -0.251 1.065 sum -17.692 -15.706 3.470 23.910 Atomic orbital electron populations 1.21851 0.92766 1.02055 1.03041 1.22127 0.96975 0.95007 0.96137 1.21367 0.99150 0.91605 0.87410 1.55632 1.77952 1.26947 1.27440 1.01517 0.74161 0.71831 0.73305 1.93568 1.78768 1.81105 1.42187 1.93556 1.77671 1.77813 1.46366 1.30281 1.25270 1.23809 1.00009 1.20770 0.94651 0.93235 0.95772 1.21239 0.93944 1.02377 0.98854 1.21120 0.99190 0.84937 0.92039 1.18539 0.84849 0.97320 0.99050 1.20971 0.92440 0.90311 1.51852 0.92292 1.25003 0.95767 0.98534 0.94825 1.69945 0.98049 1.35180 1.49780 0.86480 0.77705 0.84902 0.78329 1.20447 1.21024 1.19695 1.21249 0.94003 1.02213 0.98951 1.20763 0.94569 0.93132 0.95613 1.23062 1.00586 0.97495 0.97338 1.23413 0.99589 0.95974 0.84325 1.89242 1.34894 1.73824 1.30949 1.23667 0.88013 0.94926 0.96166 0.91904 0.92161 0.91610 0.90693 0.89734 0.75097 0.85324 0.85357 0.94705 0.94699 0.92623 0.85346 0.85281 0.89872 0.89862 0.88910 0.92349 0.91820 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.12 37.16 0.30 -0.51 16 2 C -0.10 -0.70 0.76 -152.94 -0.12 -0.81 16 3 C 0.13 1.13 4.94 -4.04 -0.02 1.11 16 4 N -1.12 -10.47 5.19 -10.61 -0.06 -10.52 16 5 S 2.70 36.05 5.74 -107.50 -0.62 35.43 16 6 O -0.97 -15.17 17.28 -57.17 -0.99 -16.16 16 7 O -0.96 -15.01 16.76 -57.17 -0.96 -15.97 16 8 C -0.70 -10.94 5.94 -39.58 -0.24 -11.17 16 9 C -0.02 -0.40 9.52 -39.58 -0.38 -0.77 16 10 C -0.15 -2.68 9.70 -39.58 -0.38 -3.07 16 11 C 0.03 0.57 5.07 -104.62 -0.53 0.04 16 12 C 0.04 0.96 5.10 -29.04 -0.15 0.81 16 13 C -0.52 -14.09 9.09 -34.44 -0.31 -14.40 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 17 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.15 -2.72 9.70 -39.58 -0.38 -3.10 16 22 C -0.02 -0.35 9.52 -39.58 -0.38 -0.72 16 23 C -0.15 -0.90 6.38 -25.16 -0.16 -1.06 16 24 C 0.04 0.31 7.63 37.94 0.29 0.60 16 25 O -0.37 -3.76 11.66 -35.23 -0.41 -4.17 16 26 C 0.05 0.38 6.49 37.93 0.25 0.63 16 27 H 0.06 0.36 7.22 -51.93 -0.37 -0.02 16 28 H 0.06 0.28 8.12 -51.93 -0.42 -0.14 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.71 7.76 -51.93 -0.40 0.31 16 32 H 0.41 2.99 7.05 -34.47 -0.24 2.75 16 33 H 0.13 1.75 7.61 -52.49 -0.40 1.35 16 34 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 35 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 36 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.13 2.29 8.06 -52.49 -0.42 1.86 16 39 H 0.13 1.82 7.62 -52.48 -0.40 1.42 16 40 H 0.08 0.51 7.73 -51.93 -0.40 0.11 16 41 H 0.08 0.39 7.73 -51.93 -0.40 -0.02 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.40 7.86 -51.92 -0.41 -0.01 16 45 H 0.10 0.73 6.86 -51.93 -0.36 0.38 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -33.76 380.68 -10.61 -44.37 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.73 Total: 0.84 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: -2.31 Total: -30.85 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.68 Total: -35.38 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -2.36 Total: -36.31 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 36.05 SS G_CDS: -0.62 Total: 35.43 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.76 -10.61 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885012086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.206 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds