Wall clock time and date at job start Sat Apr 11 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 119.99508 * 2 1 4 4 C 1.53001 * 109.47056 * 124.99855 * 3 2 1 5 5 O 1.42907 * 109.47107 * 179.97438 * 4 3 2 6 6 C 1.42901 * 113.99699 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46653 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.47122 * 64.99757 * 7 6 5 9 9 S 1.65599 * 119.99879 * 164.99639 * 8 7 6 10 10 O 1.42101 * 106.40542 * 311.46159 * 9 8 7 11 11 O 1.42098 * 106.40229 * 178.53922 * 9 8 7 12 12 C 1.76203 * 107.21703 * 65.00041 * 9 8 7 13 13 C 1.38233 * 120.00082 * 90.00045 * 12 9 8 14 14 C 1.38237 * 120.00111 * 179.97438 * 13 12 9 15 15 C 1.38231 * 119.99929 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99766 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47151 * 90.00279 * 16 15 14 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99694 * 180.27762 * 17 16 15 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 16 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 16 22 22 H 1.48504 * 109.47266 * 60.00049 * 21 19 17 23 23 H 1.48504 * 109.46970 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47383 * 299.99456 * 21 19 17 25 25 C 1.38233 * 120.00119 * 0.25187 * 15 14 13 26 26 C 1.38232 * 119.99735 * 359.49690 * 25 15 14 27 27 H 1.08011 * 119.99638 * 179.97438 * 1 2 3 28 28 H 1.07993 * 120.00616 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00182 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47771 * 4.99966 * 3 2 1 31 31 H 1.09003 * 109.46897 * 244.99536 * 3 2 1 32 32 H 1.09005 * 109.47130 * 60.00085 * 4 3 2 33 33 H 1.09002 * 109.47482 * 299.99845 * 4 3 2 34 34 H 1.09000 * 109.47435 * 59.99856 * 6 5 4 35 35 H 1.09007 * 109.47124 * 299.99653 * 6 5 4 36 36 H 1.08995 * 109.47527 * 304.99189 * 7 6 5 37 37 H 1.09003 * 109.46770 * 184.99695 * 7 6 5 38 38 H 0.96990 * 120.00143 * 345.00111 * 8 7 6 39 39 H 1.08000 * 120.00181 * 359.97438 * 13 12 9 40 40 H 1.08003 * 119.99517 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47088 * 329.99418 * 16 15 14 42 42 H 1.09007 * 109.46560 * 209.99923 * 16 15 14 43 43 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.00409 * 179.72430 * 25 15 14 45 45 H 1.08008 * 119.99912 * 180.25278 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 8 3.7497 2.5706 1.1813 6 6 4.6892 2.6994 2.2504 7 6 5.3926 4.0545 2.1507 8 7 4.4174 5.1274 2.3603 9 16 4.9364 6.6676 2.6777 10 8 5.9106 6.5589 3.7064 11 8 3.7684 7.4685 2.7949 12 6 5.7881 7.2368 1.2440 13 6 5.0963 7.8958 0.2451 14 6 5.7646 8.3428 -0.8794 15 6 7.1246 8.1303 -1.0052 16 6 7.8531 8.6171 -2.2313 17 6 8.3493 10.0206 -1.9967 18 1 8.1562 10.5112 -1.0541 19 6 9.0445 10.6806 -2.9877 20 7 9.2794 10.0834 -4.1356 21 14 9.6529 12.4232 -2.6997 22 1 10.5802 12.4384 -1.5399 23 1 10.3665 12.9046 -3.9098 24 1 8.4962 13.3116 -2.4205 25 6 7.8155 7.4663 -0.0089 26 6 7.1482 7.0239 1.1179 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5401 0.9352 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4026 -0.9314 32 1 3.7399 0.5067 1.0921 33 1 2.4771 1.2357 2.1131 34 1 5.4282 1.9010 2.1828 35 1 4.1660 2.6305 3.2042 36 1 5.8413 4.1592 1.1629 37 1 6.1706 4.1168 2.9116 38 1 3.4678 4.9357 2.3132 39 1 4.0335 8.0614 0.3431 40 1 5.2238 8.8573 -1.6600 41 1 7.1743 8.6094 -3.0842 42 1 8.6999 7.9616 -2.4350 43 1 9.7682 10.5479 -4.8329 44 1 8.8774 7.2963 -0.1091 45 1 7.6887 6.5087 1.8983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885077379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:07 Heat of formation + Delta-G solvation = -93.595489 kcal Electronic energy + Delta-G solvation = -26153.896134 eV Core-core repulsion = 22263.387863 eV Total energy + Delta-G solvation = -3890.508271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.78760 -38.69790 -37.13098 -35.94320 -35.74156 -34.79317 -33.66107 -31.54029 -30.55260 -30.23172 -28.36698 -27.41306 -23.71450 -23.42220 -22.94445 -22.28314 -20.88200 -20.21684 -19.46896 -17.90126 -17.31800 -16.97603 -16.85139 -16.43299 -16.11109 -15.53737 -15.23087 -15.05406 -14.54768 -14.36132 -14.29376 -13.97990 -13.74961 -13.38076 -13.31175 -13.08315 -12.78895 -12.36460 -12.22490 -12.07843 -12.00684 -11.90879 -11.68646 -11.60270 -11.49333 -11.46970 -11.32933 -10.94984 -10.88790 -10.52576 -10.46026 -10.01009 -9.80541 -9.78798 -9.69641 -9.53809 -8.56647 -8.52299 -8.36492 -6.15982 -4.21033 0.53668 1.35530 1.80296 1.82080 3.05691 3.26915 3.28041 3.30965 3.34594 3.78834 4.14122 4.38538 4.41591 4.50079 4.58206 4.64989 4.75711 4.85062 4.89853 5.01286 5.02859 5.17149 5.21914 5.26339 5.28702 5.39745 5.42691 5.54238 5.64510 5.70524 5.74453 5.86479 5.93479 6.18316 6.27410 6.30505 6.35467 6.53037 6.79271 6.85827 6.88031 6.93269 7.30866 7.45159 7.60732 7.78942 8.14519 8.83496 9.43781 10.94001 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.002334 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.298883 B =11993.336948 C =13262.734145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.155 4.155 3 C -0.095 4.095 4 C 0.067 3.933 5 O -0.385 6.385 6 C 0.057 3.943 7 C 0.120 3.880 8 N -1.116 6.116 9 S 2.699 3.301 10 O -0.966 6.966 11 O -0.966 6.966 12 C -0.703 4.703 13 C -0.020 4.020 14 C -0.146 4.146 15 C 0.026 3.974 16 C 0.040 3.960 17 C -0.518 4.518 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.899 3.101 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.146 4.146 26 C -0.026 4.026 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.420 0.580 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.265 0.735 44 H 0.128 0.872 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.800 -20.459 11.087 26.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.173 4.173 3 C -0.132 4.132 4 C -0.010 4.010 5 O -0.304 6.304 6 C -0.022 4.022 7 C -0.007 4.007 8 N -0.876 5.876 9 S 2.792 3.208 10 O -0.956 6.956 11 O -0.956 6.956 12 C -0.793 4.793 13 C -0.040 4.040 14 C -0.165 4.165 15 C 0.026 3.974 16 C 0.003 3.997 17 C -0.556 4.556 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.165 4.165 26 C -0.045 4.045 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.128 0.872 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.254 0.746 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.146 0.854 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.673 -19.811 11.572 26.210 hybrid contribution 0.333 0.618 -0.598 0.922 sum -12.340 -19.193 10.974 25.319 Atomic orbital electron populations 1.23924 0.95918 1.02120 1.00466 1.22801 0.96026 0.98010 1.00492 1.20669 0.98005 0.95909 0.98661 1.22427 0.93950 0.86291 0.98322 1.87918 1.55037 1.37569 1.49891 1.22691 0.92186 0.96857 0.90416 1.21349 0.90986 0.85397 1.02952 1.55472 1.16437 1.25333 1.90344 1.01507 0.73297 0.71942 0.74079 1.93552 1.62213 1.85961 1.53910 1.93566 1.48614 1.66856 1.86603 1.30307 1.06368 1.20542 1.22058 1.20768 0.99190 0.92341 0.91661 1.21247 0.94925 1.01903 0.98387 1.21116 0.93341 0.86616 0.96365 1.18533 0.95370 0.96625 0.89178 1.20934 1.35816 0.98015 1.00803 0.92335 1.25004 0.95771 0.98419 0.94969 1.69935 1.40467 1.37690 1.04909 0.86535 0.79087 0.84087 0.77646 1.20046 1.21119 1.20041 1.21236 1.00417 1.00716 0.94089 1.20775 0.91910 0.95126 0.96715 0.88325 0.88340 0.87230 0.90492 0.89904 0.93154 0.93207 0.91668 0.92297 0.90407 0.88698 0.74586 0.85263 0.85369 0.94721 0.94722 0.92582 0.85365 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.06 14.32 29.02 0.42 -0.64 16 2 C -0.16 -0.92 9.52 -36.03 -0.34 -1.26 16 3 C -0.10 -0.65 6.03 -27.88 -0.17 -0.82 16 4 C 0.07 0.45 5.92 37.16 0.22 0.67 16 5 O -0.38 -3.40 10.14 -35.23 -0.36 -3.76 16 6 C 0.06 0.40 6.13 37.16 0.23 0.63 16 7 C 0.12 1.04 6.61 -4.04 -0.03 1.01 16 8 N -1.12 -11.38 5.96 -10.61 -0.06 -11.45 16 9 S 2.70 37.25 5.74 -107.50 -0.62 36.63 16 10 O -0.97 -15.24 16.75 -57.17 -0.96 -16.20 16 11 O -0.97 -15.73 17.28 -57.17 -0.99 -16.72 16 12 C -0.70 -11.14 5.95 -39.58 -0.24 -11.37 16 13 C -0.02 -0.34 9.52 -39.58 -0.38 -0.71 16 14 C -0.15 -2.76 9.70 -39.58 -0.38 -3.14 16 15 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 16 C 0.04 0.98 5.10 -29.03 -0.15 0.83 16 17 C -0.52 -14.11 9.09 -34.44 -0.31 -14.43 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -25.63 13.29 55.43 0.74 -24.90 16 21 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 25 C -0.15 -2.70 9.70 -39.59 -0.38 -3.09 16 26 C -0.03 -0.42 9.52 -39.58 -0.38 -0.79 16 27 H 0.10 0.45 8.06 -52.48 -0.42 0.02 16 28 H 0.10 0.54 7.84 -52.49 -0.41 0.13 16 29 H 0.11 0.54 8.06 -52.49 -0.42 0.11 16 30 H 0.08 0.55 7.79 -51.93 -0.40 0.15 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.73 7.75 -51.93 -0.40 0.32 16 38 H 0.42 3.73 8.51 -34.47 -0.29 3.43 16 39 H 0.13 1.88 7.62 -52.49 -0.40 1.48 16 40 H 0.13 2.31 8.06 -52.48 -0.42 1.88 16 41 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 42 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 45 H 0.13 1.74 7.62 -52.48 -0.40 1.34 16 LS Contribution 398.11 15.07 6.00 6.00 Total: -1.00 -33.52 398.11 -10.71 -44.23 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.92 Total: 1.47 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: -2.52 Total: -31.52 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.67 Total: -36.34 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -2.30 Total: -36.68 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 37.25 SS G_CDS: -0.62 Total: 36.63 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.52 -10.71 -44.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885077379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.366 kcal (2) G-P(sol) polarization free energy of solvation -33.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds