Wall clock time and date at job start Sat Apr 11 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 119.99508 * 2 1 4 4 C 1.53001 * 109.47056 * 124.99855 * 3 2 1 5 5 O 1.42907 * 109.47107 * 179.97438 * 4 3 2 6 6 C 1.42901 * 113.99699 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46653 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.47122 * 64.99757 * 7 6 5 9 9 S 1.65599 * 119.99879 * 164.99639 * 8 7 6 10 10 O 1.42101 * 106.40542 * 311.46159 * 9 8 7 11 11 O 1.42098 * 106.40229 * 178.53922 * 9 8 7 12 12 C 1.76203 * 107.21703 * 65.00041 * 9 8 7 13 13 C 1.38233 * 120.00082 * 90.00045 * 12 9 8 14 14 C 1.38237 * 120.00111 * 179.97438 * 13 12 9 15 15 C 1.38231 * 119.99929 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99766 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47151 * 90.00279 * 16 15 14 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99694 * 180.27762 * 17 16 15 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 16 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 16 22 22 H 1.48504 * 109.47266 * 60.00049 * 21 19 17 23 23 H 1.48504 * 109.46970 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47383 * 299.99456 * 21 19 17 25 25 C 1.38233 * 120.00119 * 0.25187 * 15 14 13 26 26 C 1.38232 * 119.99735 * 359.49690 * 25 15 14 27 27 H 1.08011 * 119.99638 * 179.97438 * 1 2 3 28 28 H 1.07993 * 120.00616 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00182 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47771 * 4.99966 * 3 2 1 31 31 H 1.09003 * 109.46897 * 244.99536 * 3 2 1 32 32 H 1.09005 * 109.47130 * 60.00085 * 4 3 2 33 33 H 1.09002 * 109.47482 * 299.99845 * 4 3 2 34 34 H 1.09000 * 109.47435 * 59.99856 * 6 5 4 35 35 H 1.09007 * 109.47124 * 299.99653 * 6 5 4 36 36 H 1.08995 * 109.47527 * 304.99189 * 7 6 5 37 37 H 1.09003 * 109.46770 * 184.99695 * 7 6 5 38 38 H 0.96990 * 120.00143 * 345.00111 * 8 7 6 39 39 H 1.08000 * 120.00181 * 359.97438 * 13 12 9 40 40 H 1.08003 * 119.99517 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47088 * 329.99418 * 16 15 14 42 42 H 1.09007 * 109.46560 * 209.99923 * 16 15 14 43 43 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.00409 * 179.72430 * 25 15 14 45 45 H 1.08008 * 119.99912 * 180.25278 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 8 3.7497 2.5706 1.1813 6 6 4.6892 2.6994 2.2504 7 6 5.3926 4.0545 2.1507 8 7 4.4174 5.1274 2.3603 9 16 4.9364 6.6676 2.6777 10 8 5.9106 6.5589 3.7064 11 8 3.7684 7.4685 2.7949 12 6 5.7881 7.2368 1.2440 13 6 5.0963 7.8958 0.2451 14 6 5.7646 8.3428 -0.8794 15 6 7.1246 8.1303 -1.0052 16 6 7.8531 8.6171 -2.2313 17 6 8.3493 10.0206 -1.9967 18 1 8.1562 10.5112 -1.0541 19 6 9.0445 10.6806 -2.9877 20 7 9.2794 10.0834 -4.1356 21 14 9.6529 12.4232 -2.6997 22 1 10.5802 12.4384 -1.5399 23 1 10.3665 12.9046 -3.9098 24 1 8.4962 13.3116 -2.4205 25 6 7.8155 7.4663 -0.0089 26 6 7.1482 7.0239 1.1179 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5401 0.9352 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4026 -0.9314 32 1 3.7399 0.5067 1.0921 33 1 2.4771 1.2357 2.1131 34 1 5.4282 1.9010 2.1828 35 1 4.1660 2.6305 3.2042 36 1 5.8413 4.1592 1.1629 37 1 6.1706 4.1168 2.9116 38 1 3.4678 4.9357 2.3132 39 1 4.0335 8.0614 0.3431 40 1 5.2238 8.8573 -1.6600 41 1 7.1743 8.6094 -3.0842 42 1 8.6999 7.9616 -2.4350 43 1 9.7682 10.5479 -4.8329 44 1 8.8774 7.2963 -0.1091 45 1 7.6887 6.5087 1.8983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885077379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:06 Heat of formation + Delta-G solvation = -115.640770 kcal Electronic energy + Delta-G solvation = -26154.852089 eV Core-core repulsion = 22263.387863 eV Total energy + Delta-G solvation = -3891.464226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.22112 -39.27866 -38.33017 -36.96164 -36.55972 -35.59953 -35.41438 -33.31167 -31.94958 -30.78456 -29.24108 -28.98305 -25.58946 -23.94237 -23.78779 -23.45434 -22.46482 -20.67204 -20.55648 -19.04809 -18.59408 -18.39272 -17.63222 -17.51835 -16.90967 -16.84765 -16.33914 -16.04790 -15.98223 -15.63206 -15.26723 -14.98820 -14.62385 -14.53833 -14.43187 -14.05235 -13.94657 -13.86792 -13.40799 -13.38055 -13.20920 -13.15538 -13.11447 -12.66767 -12.65434 -12.65067 -12.16768 -12.14509 -12.02887 -12.00507 -11.87368 -11.69356 -11.42893 -10.65214 -10.53499 -10.48082 -10.24558 -9.95074 -9.93929 -8.27026 -6.39939 -0.59964 -0.04866 0.41019 1.36568 1.38353 1.40117 1.48574 2.03110 2.34876 2.57671 2.72295 2.85467 3.05349 3.34010 3.88050 3.90584 3.99081 4.05581 4.16723 4.17596 4.21929 4.32824 4.44048 4.46202 4.48699 4.54754 4.55857 4.64562 4.77089 4.82926 4.92081 4.94113 5.03731 5.08332 5.11885 5.14514 5.25279 5.25900 5.34360 5.66849 5.74726 5.86840 5.87004 5.93426 6.09358 6.10114 6.29659 6.71601 7.28981 8.82836 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.002334 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.298883 B =11993.336948 C =13262.734145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.161 4.161 3 C -0.096 4.096 4 C 0.065 3.935 5 O -0.408 6.408 6 C 0.055 3.945 7 C 0.108 3.892 8 N -1.102 6.102 9 S 2.729 3.271 10 O -0.980 6.980 11 O -0.988 6.988 12 C -0.701 4.701 13 C -0.020 4.020 14 C -0.157 4.157 15 C -0.005 4.005 16 C 0.049 3.951 17 C -0.534 4.534 18 H 0.054 0.946 19 C 0.009 3.991 20 N -0.925 5.925 21 Si 0.965 3.035 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.269 1.269 25 C -0.154 4.154 26 C -0.019 4.019 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.428 0.572 39 H 0.152 0.848 40 H 0.127 0.873 41 H 0.011 0.989 42 H 0.014 0.986 43 H 0.267 0.733 44 H 0.132 0.868 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.366 -21.457 13.210 28.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.179 4.179 3 C -0.133 4.133 4 C -0.011 4.011 5 O -0.328 6.328 6 C -0.022 4.022 7 C -0.018 4.018 8 N -0.865 5.865 9 S 2.819 3.181 10 O -0.970 6.970 11 O -0.978 6.978 12 C -0.788 4.788 13 C -0.039 4.039 14 C -0.176 4.176 15 C -0.005 4.005 16 C 0.012 3.988 17 C -0.572 4.572 18 H 0.072 0.928 19 C -0.190 4.190 20 N -0.565 5.565 21 Si 0.789 3.211 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.194 1.194 25 C -0.173 4.173 26 C -0.038 4.038 27 H 0.128 0.872 28 H 0.114 0.886 29 H 0.139 0.861 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.265 0.735 39 H 0.170 0.830 40 H 0.145 0.855 41 H 0.030 0.970 42 H 0.033 0.967 43 H 0.076 0.924 44 H 0.150 0.850 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.237 -20.805 13.680 28.199 hybrid contribution 0.429 0.796 -1.196 1.500 sum -12.808 -20.009 12.484 26.837 Atomic orbital electron populations 1.24073 0.96009 1.02654 1.00031 1.22863 0.96169 0.97988 1.00859 1.20661 0.97942 0.96219 0.98487 1.22509 0.94107 0.85971 0.98490 1.87883 1.55616 1.38606 1.50710 1.22784 0.92561 0.96329 0.90557 1.21639 0.91152 0.85630 1.03352 1.55169 1.17313 1.24142 1.89872 1.00678 0.72279 0.72231 0.72958 1.93536 1.62885 1.86476 1.54057 1.93535 1.49217 1.68424 1.86640 1.30822 1.06548 1.19087 1.22310 1.21005 1.00321 0.91668 0.90893 1.21293 0.94336 1.02480 0.99500 1.20831 0.94270 0.89453 0.95994 1.18258 0.94467 0.95574 0.90525 1.21262 1.35901 0.99388 1.00648 0.92782 1.25878 0.95906 1.02586 0.94670 1.70048 1.41246 1.39415 1.05752 0.85507 0.78696 0.79069 0.77855 1.19294 1.20373 1.19436 1.21319 1.00768 1.00762 0.94470 1.21076 0.92157 0.94212 0.96326 0.87151 0.88554 0.86105 0.91334 0.90839 0.91997 0.92360 0.89608 0.91000 0.90741 0.87255 0.73523 0.82994 0.85496 0.97024 0.96740 0.92370 0.85045 0.82167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.93 14.32 67.78 0.97 -0.96 16 2 C -0.16 -1.70 9.52 25.65 0.24 -1.46 16 3 C -0.10 -1.22 6.03 29.85 0.18 -1.04 16 4 C 0.07 0.77 5.92 71.98 0.43 1.19 16 5 O -0.41 -6.40 10.14 -148.98 -1.51 -7.91 16 6 C 0.06 0.63 6.13 71.98 0.44 1.07 16 7 C 0.11 1.57 6.61 86.38 0.57 2.14 16 8 N -1.10 -19.56 5.96 -187.49 -1.12 -20.68 16 9 S 2.73 68.55 5.74 -56.49 -0.32 68.23 16 10 O -0.98 -28.07 16.75 -128.00 -2.14 -30.22 16 11 O -0.99 -29.97 17.28 -128.00 -2.21 -32.18 16 12 C -0.70 -20.91 5.95 22.27 0.13 -20.78 16 13 C -0.02 -0.64 9.52 22.27 0.21 -0.43 16 14 C -0.16 -6.04 9.70 22.27 0.22 -5.82 16 15 C -0.01 -0.22 5.07 -19.87 -0.10 -0.32 16 16 C 0.05 2.52 5.10 29.10 0.15 2.67 16 17 C -0.53 -29.99 9.09 25.60 0.23 -29.76 16 18 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 19 C 0.01 0.48 5.46 84.65 0.46 0.95 16 20 N -0.93 -54.57 13.29 21.45 0.28 -54.29 16 21 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 C -0.15 -5.73 9.70 22.27 0.22 -5.51 16 26 C -0.02 -0.57 9.52 22.27 0.21 -0.36 16 27 H 0.11 0.83 8.06 -2.90 -0.02 0.81 16 28 H 0.10 0.99 7.84 -2.91 -0.02 0.96 16 29 H 0.12 0.98 8.06 -2.91 -0.02 0.96 16 30 H 0.07 0.96 7.79 -2.39 -0.02 0.94 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 0.57 8.14 -2.38 -0.02 0.56 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.11 1.30 7.75 -2.39 -0.02 1.28 16 38 H 0.43 6.51 8.51 -96.76 -0.82 5.68 16 39 H 0.15 4.16 7.62 -2.91 -0.02 4.14 16 40 H 0.13 4.75 8.06 -2.91 -0.02 4.72 16 41 H 0.01 0.63 8.09 -2.39 -0.02 0.61 16 42 H 0.01 0.78 8.08 -2.38 -0.02 0.76 16 43 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 44 H 0.13 4.66 8.06 -2.91 -0.02 4.63 16 45 H 0.16 3.85 7.62 -2.91 -0.02 3.83 16 Total: -1.00 -72.26 398.11 -0.28 -72.54 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.15 Total: 17.03 kcal Atomic # 6 Polarization: -62.98 SS G_CDS: 4.56 Total: -58.41 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -0.83 Total: -74.97 kcal Atomic # 8 Polarization: -64.44 SS G_CDS: -5.87 Total: -70.31 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 68.55 SS G_CDS: -0.32 Total: 68.23 kcal Total: -72.26 -0.28 -72.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885077379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.096 kcal (2) G-P(sol) polarization free energy of solvation -72.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds