Wall clock time and date at job start Sat Apr 11 2020 05:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42893 * 109.49698 * 2 1 4 4 C 1.53043 * 109.49430 * 120.06351 * 2 1 3 5 5 C 1.53045 * 109.53729 * 181.31497 * 4 2 1 6 6 C 1.53189 * 109.31417 * 298.63559 * 5 4 2 7 7 N 1.46928 * 108.77393 * 54.63360 * 6 5 4 8 8 S 1.65604 * 120.62960 * 126.37320 * 7 6 5 9 9 O 1.42095 * 106.40018 * 336.45368 * 8 7 6 10 10 O 1.42098 * 106.39919 * 203.53719 * 8 7 6 11 11 C 1.76201 * 107.21824 * 89.99807 * 8 7 6 12 12 C 1.38234 * 120.00103 * 90.00267 * 11 8 7 13 13 C 1.38238 * 119.99675 * 180.27958 * 12 11 8 14 14 C 1.38228 * 120.00120 * 359.47825 * 13 12 11 15 15 C 1.50698 * 120.00201 * 180.23979 * 14 13 12 16 16 C 1.50698 * 109.47350 * 270.28106 * 15 14 13 17 17 H 1.08006 * 120.00138 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00256 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99865 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00037 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47089 * 90.00306 * 20 18 16 22 22 H 1.48494 * 109.47140 * 210.00220 * 20 18 16 23 23 H 1.48499 * 109.46885 * 330.00189 * 20 18 16 24 24 C 1.38234 * 120.00000 * 0.52176 * 14 13 12 25 25 C 1.38234 * 119.99657 * 270.01898 * 11 8 7 26 26 C 1.46921 * 118.73895 * 306.64181 * 7 6 5 27 27 H 1.08999 * 109.47031 * 299.93652 * 1 2 3 28 28 H 1.09002 * 109.47089 * 59.93632 * 1 2 3 29 29 H 1.09006 * 109.47138 * 179.97438 * 1 2 3 30 30 H 0.96701 * 114.00557 * 60.06435 * 3 2 1 31 31 H 1.08997 * 109.46225 * 61.29737 * 4 2 1 32 32 H 1.09000 * 109.46235 * 301.33418 * 4 2 1 33 33 H 1.08996 * 109.50011 * 178.67596 * 5 4 2 34 34 H 1.09008 * 109.49583 * 58.58649 * 5 4 2 35 35 H 1.09001 * 109.58766 * 294.84460 * 6 5 4 36 36 H 1.08999 * 109.70605 * 174.49133 * 6 5 4 37 37 H 1.08002 * 119.99744 * 359.97438 * 12 11 8 38 38 H 1.08004 * 119.99577 * 179.72816 * 13 12 11 39 39 H 1.09002 * 109.47258 * 30.27549 * 15 14 13 40 40 H 1.08998 * 109.47359 * 150.27651 * 15 14 13 41 41 H 0.97002 * 119.99709 * 179.97438 * 19 18 16 42 42 H 1.08001 * 120.00310 * 179.72161 * 24 14 13 43 43 H 1.07997 * 120.00460 * 359.97438 * 25 11 8 44 44 H 1.08995 * 109.59006 * 173.15040 * 26 7 6 45 45 H 1.09003 * 109.58781 * 293.57167 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0069 1.3470 0.0000 4 6 2.0407 -0.7227 1.2486 5 6 3.5708 -0.6947 1.2663 6 6 4.1052 -1.4268 0.0313 7 7 3.5046 -0.8295 -1.1692 8 16 4.4588 -0.2850 -2.4083 9 8 5.7325 -0.0086 -1.8422 10 8 3.6923 0.6853 -3.1084 11 6 4.6900 -1.6327 -3.5196 12 6 3.8035 -1.8289 -4.5620 13 6 3.9816 -2.8897 -5.4303 14 6 5.0523 -3.7478 -5.2628 15 6 5.2495 -4.9010 -6.2126 16 6 4.5155 -6.1105 -5.6937 17 1 3.9617 -6.0503 -4.7683 18 6 4.5506 -7.2940 -6.4002 19 7 5.2244 -7.3672 -7.5272 20 14 3.6412 -8.7934 -5.7565 21 1 2.2572 -8.8017 -6.2947 22 1 4.3483 -10.0251 -6.1902 23 1 3.5953 -8.7453 -4.2730 24 6 5.9387 -3.5516 -4.2204 25 6 5.7576 -2.4940 -3.3488 26 6 2.0416 -0.7191 -1.2469 27 1 -0.3633 0.5128 0.8905 28 1 -0.3633 0.5148 -0.8894 29 1 -0.3634 -1.0277 -0.0005 30 1 1.7226 1.8650 0.7655 31 1 1.6966 -1.7569 1.2359 32 1 1.6581 -0.2239 2.1390 33 1 3.9333 -1.1890 2.1676 34 1 3.9159 0.3392 1.2541 35 1 3.8375 -2.4819 0.0876 36 1 5.1897 -1.3270 -0.0144 37 1 2.9690 -1.1564 -4.6950 38 1 3.2865 -3.0456 -6.2421 39 1 4.8600 -4.6334 -7.1949 40 1 6.3126 -5.1279 -6.2928 41 1 5.2495 -8.1999 -8.0241 42 1 6.7727 -4.2247 -4.0867 43 1 6.4503 -2.3406 -2.5345 44 1 1.7646 -0.1504 -2.1345 45 1 1.6021 -1.7154 -1.2969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885081215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:12 Heat of formation + Delta-G solvation = -112.648741 kcal Electronic energy + Delta-G solvation = -27920.596610 eV Core-core repulsion = 24029.262128 eV Total energy + Delta-G solvation = -3891.334482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.70762 -38.77388 -37.13369 -35.88249 -35.65518 -33.67687 -32.40032 -31.85228 -31.54362 -30.55379 -27.41997 -27.22593 -24.92585 -23.70195 -22.52100 -22.24796 -20.84219 -20.53243 -18.89490 -17.82796 -17.31094 -16.73326 -16.46024 -16.11614 -15.41024 -15.11453 -14.91617 -14.84941 -14.37290 -14.27274 -14.09442 -13.87093 -13.66949 -13.11402 -13.04443 -12.83003 -12.55240 -12.33914 -12.24412 -12.17361 -11.98820 -11.88481 -11.82534 -11.75148 -11.48686 -11.32174 -11.25591 -10.93237 -10.89557 -10.65577 -10.49465 -10.47617 -10.11635 -9.80422 -9.64217 -9.09661 -8.58032 -8.54459 -8.35633 -6.18255 -4.23486 0.52706 1.36580 1.81498 3.02735 3.21521 3.28316 3.31363 3.87185 3.89609 4.13232 4.31428 4.35084 4.38025 4.52532 4.61090 4.77468 4.86920 5.04399 5.15580 5.19607 5.23066 5.25912 5.27753 5.38568 5.46057 5.50743 5.55726 5.59753 5.73391 5.73900 5.77018 5.83563 5.92960 6.03014 6.05087 6.27131 6.35052 6.44169 6.57247 6.85527 6.92096 7.30228 7.44043 7.44935 7.60064 7.76330 8.12280 8.81007 9.41149 10.91856 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015369 B = 0.003070 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.460010 B = 9117.407891 C = 9879.652011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.118 3.882 3 O -0.549 6.549 4 C -0.143 4.143 5 C -0.128 4.128 6 C 0.117 3.883 7 N -0.992 5.992 8 S 2.699 3.301 9 O -0.965 6.965 10 O -0.959 6.959 11 C -0.706 4.706 12 C -0.024 4.024 13 C -0.145 4.145 14 C 0.025 3.975 15 C 0.039 3.961 16 C -0.517 4.517 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.899 3.101 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.145 4.145 25 C -0.024 4.024 26 C 0.132 3.868 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.372 0.628 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.264 0.736 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.101 0.899 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.470 13.508 17.842 23.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.076 3.924 3 O -0.354 6.354 4 C -0.181 4.181 5 C -0.167 4.167 6 C -0.008 4.008 7 N -0.828 5.828 8 S 2.793 3.207 9 O -0.955 6.955 10 O -0.949 6.949 11 C -0.795 4.795 12 C -0.044 4.044 13 C -0.164 4.164 14 C 0.025 3.975 15 C 0.002 3.998 16 C -0.555 4.555 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.529 5.529 20 Si 0.726 3.274 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.164 4.164 25 C -0.044 4.044 26 C 0.006 3.994 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.219 0.781 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.119 0.881 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.791 14.020 17.043 23.090 hybrid contribution -0.890 -1.583 0.540 1.894 sum -7.681 12.438 17.582 22.866 Atomic orbital electron populations 1.22456 0.95093 1.03119 1.02995 1.21443 0.92423 0.83108 0.95469 1.86666 1.77053 1.22632 1.49073 1.22185 0.96652 1.01640 0.97598 1.21780 0.95229 1.02137 0.97537 1.21463 0.98668 0.96922 0.83777 1.57596 1.15691 1.78202 1.31353 1.01607 0.72746 0.73805 0.72551 1.93524 1.40460 1.83676 1.77841 1.93539 1.71308 1.56827 1.73225 1.30497 1.07705 1.23710 1.17557 1.20764 0.95901 0.95745 0.91959 1.21239 0.99152 0.95323 1.00698 1.21100 0.90101 0.93004 0.93302 1.18539 0.98632 0.89523 0.93108 1.20953 1.31905 0.94396 1.08227 0.92347 1.25013 0.95391 0.98940 0.94848 1.69949 1.41026 1.27111 1.14816 0.86481 0.79747 0.81926 0.79231 1.20469 1.21025 1.19772 1.21241 1.01074 0.98110 0.95988 1.20762 0.93864 0.92202 0.97528 1.21360 0.79327 1.00271 0.98406 0.91997 0.91255 0.91249 0.78120 0.90723 0.91520 0.90782 0.90672 0.91228 0.88734 0.85371 0.85363 0.94700 0.94700 0.92611 0.85370 0.85381 0.88070 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 8.82 37.16 0.33 -0.81 16 2 C 0.12 0.99 1.00 -90.72 -0.09 0.90 16 3 O -0.55 -5.36 12.17 -35.23 -0.43 -5.79 16 4 C -0.14 -0.99 4.89 -26.69 -0.13 -1.12 16 5 C -0.13 -1.03 5.94 -26.61 -0.16 -1.19 16 6 C 0.12 1.17 6.48 -3.71 -0.02 1.14 16 7 N -0.99 -11.89 3.24 -113.77 -0.37 -12.26 16 8 S 2.70 41.16 5.73 -107.50 -0.62 40.55 16 9 O -0.96 -16.44 15.87 -57.17 -0.91 -17.35 16 10 O -0.96 -16.66 15.86 -57.17 -0.91 -17.56 16 11 C -0.71 -11.64 5.97 -39.58 -0.24 -11.88 16 12 C -0.02 -0.41 9.52 -39.58 -0.38 -0.78 16 13 C -0.15 -2.74 9.70 -39.58 -0.38 -3.13 16 14 C 0.03 0.53 5.07 -104.63 -0.53 0.00 16 15 C 0.04 0.95 5.10 -29.04 -0.15 0.81 16 16 C -0.52 -13.86 9.09 -34.44 -0.31 -14.17 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 20 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 C -0.15 -2.75 9.70 -39.58 -0.38 -3.13 16 25 C -0.02 -0.41 9.52 -39.58 -0.38 -0.78 16 26 C 0.13 1.37 5.39 -3.94 -0.02 1.35 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.37 2.08 9.05 45.56 0.41 2.50 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.69 7.61 -51.92 -0.40 0.30 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.98 6.92 -51.93 -0.36 0.62 16 37 H 0.13 1.86 7.62 -52.49 -0.40 1.46 16 38 H 0.13 2.29 8.06 -52.48 -0.42 1.86 16 39 H 0.03 0.90 8.09 -51.93 -0.42 0.48 16 40 H 0.03 0.90 8.09 -51.93 -0.42 0.48 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.13 2.29 8.06 -52.49 -0.42 1.86 16 43 H 0.13 1.85 7.62 -52.49 -0.40 1.45 16 44 H 0.10 1.15 6.91 -51.93 -0.36 0.79 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -33.79 377.89 -10.87 -44.66 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.11 Total: 2.30 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -2.94 Total: -31.25 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.37 Total: -36.99 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -2.24 Total: -40.70 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 41.16 SS G_CDS: -0.62 Total: 40.55 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.79 -10.87 -44.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885081215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.989 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds