Wall clock time and date at job start Sat Apr 11 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42893 * 109.49698 * 2 1 4 4 C 1.53043 * 109.49430 * 120.06351 * 2 1 3 5 5 C 1.53045 * 109.53729 * 181.31497 * 4 2 1 6 6 C 1.53189 * 109.31417 * 298.63559 * 5 4 2 7 7 N 1.46928 * 108.77393 * 54.63360 * 6 5 4 8 8 S 1.65604 * 120.62960 * 126.37320 * 7 6 5 9 9 O 1.42095 * 106.40018 * 336.45368 * 8 7 6 10 10 O 1.42098 * 106.39919 * 203.53719 * 8 7 6 11 11 C 1.76201 * 107.21824 * 89.99807 * 8 7 6 12 12 C 1.38234 * 120.00103 * 90.00267 * 11 8 7 13 13 C 1.38238 * 119.99675 * 180.27958 * 12 11 8 14 14 C 1.38228 * 120.00120 * 359.47825 * 13 12 11 15 15 C 1.50698 * 120.00201 * 180.23979 * 14 13 12 16 16 C 1.50698 * 109.47350 * 270.28106 * 15 14 13 17 17 H 1.08006 * 120.00138 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00256 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99865 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00037 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47089 * 90.00306 * 20 18 16 22 22 H 1.48494 * 109.47140 * 210.00220 * 20 18 16 23 23 H 1.48499 * 109.46885 * 330.00189 * 20 18 16 24 24 C 1.38234 * 120.00000 * 0.52176 * 14 13 12 25 25 C 1.38234 * 119.99657 * 270.01898 * 11 8 7 26 26 C 1.46921 * 118.73895 * 306.64181 * 7 6 5 27 27 H 1.08999 * 109.47031 * 299.93652 * 1 2 3 28 28 H 1.09002 * 109.47089 * 59.93632 * 1 2 3 29 29 H 1.09006 * 109.47138 * 179.97438 * 1 2 3 30 30 H 0.96701 * 114.00557 * 60.06435 * 3 2 1 31 31 H 1.08997 * 109.46225 * 61.29737 * 4 2 1 32 32 H 1.09000 * 109.46235 * 301.33418 * 4 2 1 33 33 H 1.08996 * 109.50011 * 178.67596 * 5 4 2 34 34 H 1.09008 * 109.49583 * 58.58649 * 5 4 2 35 35 H 1.09001 * 109.58766 * 294.84460 * 6 5 4 36 36 H 1.08999 * 109.70605 * 174.49133 * 6 5 4 37 37 H 1.08002 * 119.99744 * 359.97438 * 12 11 8 38 38 H 1.08004 * 119.99577 * 179.72816 * 13 12 11 39 39 H 1.09002 * 109.47258 * 30.27549 * 15 14 13 40 40 H 1.08998 * 109.47359 * 150.27651 * 15 14 13 41 41 H 0.97002 * 119.99709 * 179.97438 * 19 18 16 42 42 H 1.08001 * 120.00310 * 179.72161 * 24 14 13 43 43 H 1.07997 * 120.00460 * 359.97438 * 25 11 8 44 44 H 1.08995 * 109.59006 * 173.15040 * 26 7 6 45 45 H 1.09003 * 109.58781 * 293.57167 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0069 1.3470 0.0000 4 6 2.0407 -0.7227 1.2486 5 6 3.5708 -0.6947 1.2663 6 6 4.1052 -1.4268 0.0313 7 7 3.5046 -0.8295 -1.1692 8 16 4.4588 -0.2850 -2.4083 9 8 5.7325 -0.0086 -1.8422 10 8 3.6923 0.6853 -3.1084 11 6 4.6900 -1.6327 -3.5196 12 6 3.8035 -1.8289 -4.5620 13 6 3.9816 -2.8897 -5.4303 14 6 5.0523 -3.7478 -5.2628 15 6 5.2495 -4.9010 -6.2126 16 6 4.5155 -6.1105 -5.6937 17 1 3.9617 -6.0503 -4.7683 18 6 4.5506 -7.2940 -6.4002 19 7 5.2244 -7.3672 -7.5272 20 14 3.6412 -8.7934 -5.7565 21 1 2.2572 -8.8017 -6.2947 22 1 4.3483 -10.0251 -6.1902 23 1 3.5953 -8.7453 -4.2730 24 6 5.9387 -3.5516 -4.2204 25 6 5.7576 -2.4940 -3.3488 26 6 2.0416 -0.7191 -1.2469 27 1 -0.3633 0.5128 0.8905 28 1 -0.3633 0.5148 -0.8894 29 1 -0.3634 -1.0277 -0.0005 30 1 1.7226 1.8650 0.7655 31 1 1.6966 -1.7569 1.2359 32 1 1.6581 -0.2239 2.1390 33 1 3.9333 -1.1890 2.1676 34 1 3.9159 0.3392 1.2541 35 1 3.8375 -2.4819 0.0876 36 1 5.1897 -1.3270 -0.0144 37 1 2.9690 -1.1564 -4.6950 38 1 3.2865 -3.0456 -6.2421 39 1 4.8600 -4.6334 -7.1949 40 1 6.3126 -5.1279 -6.2928 41 1 5.2495 -8.1999 -8.0241 42 1 6.7727 -4.2247 -4.0867 43 1 6.4503 -2.3406 -2.5345 44 1 1.7646 -0.1504 -2.1345 45 1 1.6021 -1.7154 -1.2969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885081215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:11 Heat of formation + Delta-G solvation = -136.187280 kcal Electronic energy + Delta-G solvation = -27921.617318 eV Core-core repulsion = 24029.262128 eV Total energy + Delta-G solvation = -3892.355189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.37240 -40.25139 -38.42231 -36.97677 -36.62238 -35.59737 -33.33556 -33.08636 -32.49461 -31.98381 -29.24798 -27.82944 -25.74623 -25.51359 -23.76677 -23.09985 -22.44687 -21.25375 -20.03581 -18.93427 -18.58727 -18.49191 -17.46295 -17.08943 -16.85424 -16.34906 -16.01437 -15.94906 -15.50829 -15.41074 -15.27329 -14.82003 -14.61098 -14.52247 -14.45822 -13.86764 -13.66759 -13.50259 -13.46146 -13.40494 -13.20344 -13.14792 -12.88813 -12.73858 -12.67365 -12.65081 -12.61306 -12.12475 -12.06290 -12.00555 -11.89698 -11.67349 -11.46736 -11.31631 -10.70113 -10.65061 -10.04952 -9.98863 -9.87964 -8.25995 -6.39398 -0.68308 -0.08048 0.37383 1.39776 1.40347 1.51725 1.93365 2.35660 2.59345 2.78523 3.06759 3.21397 3.30146 3.77743 3.81630 3.89426 3.94175 3.97502 4.08514 4.14049 4.17015 4.42012 4.44357 4.45520 4.57347 4.71486 4.75791 4.79119 4.85602 4.88711 4.90590 4.95228 5.06027 5.09023 5.18256 5.22862 5.23804 5.25629 5.31429 5.40889 5.45298 5.63797 5.67317 5.84067 5.90520 6.09233 6.72454 6.98891 7.29811 8.84409 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015369 B = 0.003070 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.460010 B = 9117.407891 C = 9879.652011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.116 3.884 3 O -0.575 6.575 4 C -0.138 4.138 5 C -0.126 4.126 6 C 0.105 3.895 7 N -0.985 5.985 8 S 2.716 3.284 9 O -0.983 6.983 10 O -0.981 6.981 11 C -0.702 4.702 12 C -0.021 4.021 13 C -0.153 4.153 14 C -0.003 4.003 15 C 0.047 3.953 16 C -0.531 4.531 17 H 0.059 0.941 18 C 0.007 3.993 19 N -0.928 5.928 20 Si 0.968 3.032 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.264 1.264 24 C -0.153 4.153 25 C -0.020 4.020 26 C 0.117 3.883 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.388 0.612 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.153 0.847 38 H 0.131 0.869 39 H 0.011 0.989 40 H 0.012 0.988 41 H 0.267 0.733 42 H 0.131 0.869 43 H 0.154 0.846 44 H 0.087 0.913 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.139 13.560 20.810 26.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.074 3.926 3 O -0.383 6.383 4 C -0.176 4.176 5 C -0.165 4.165 6 C -0.019 4.019 7 N -0.825 5.825 8 S 2.809 3.191 9 O -0.973 6.973 10 O -0.971 6.971 11 C -0.789 4.789 12 C -0.040 4.040 13 C -0.172 4.172 14 C -0.003 4.003 15 C 0.010 3.990 16 C -0.569 4.569 17 H 0.077 0.923 18 C -0.192 4.192 19 N -0.568 5.568 20 Si 0.792 3.208 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.188 1.188 24 C -0.172 4.172 25 C -0.039 4.039 26 C -0.008 4.008 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.237 0.763 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.170 0.830 38 H 0.149 0.851 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.076 0.924 42 H 0.149 0.851 43 H 0.172 0.828 44 H 0.105 0.895 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.458 14.078 20.009 25.886 hybrid contribution -0.375 -1.480 -0.311 1.558 sum -8.833 12.598 19.698 24.995 Atomic orbital electron populations 1.22412 0.93506 1.03908 1.03342 1.21506 0.93516 0.82559 0.95017 1.86619 1.77659 1.23594 1.50467 1.22174 0.95574 1.02298 0.97539 1.21792 0.96242 1.01221 0.97275 1.21765 0.98456 0.98103 0.83594 1.57375 1.16251 1.78164 1.30659 1.01025 0.72404 0.73209 0.72492 1.93497 1.41890 1.83905 1.78013 1.93509 1.71675 1.57663 1.74248 1.30900 1.06999 1.23473 1.17523 1.20999 0.96575 0.95175 0.91236 1.21299 0.98742 0.95746 1.01400 1.20820 0.92327 0.93090 0.94087 1.18276 0.96720 0.90886 0.93092 1.21280 1.31908 0.95459 1.08212 0.92324 1.25930 0.96165 1.02156 0.94968 1.70073 1.42497 1.28052 1.16151 0.85400 0.78525 0.77885 0.78983 1.19636 1.20611 1.18777 1.21308 1.00895 0.99062 0.95926 1.21011 0.94224 0.91181 0.97501 1.21687 0.78184 1.01638 0.99242 0.90301 0.92315 0.90213 0.76257 0.89642 0.89501 0.88649 0.92083 0.89510 0.89389 0.82972 0.85102 0.97046 0.97015 0.92428 0.85065 0.82805 0.89496 0.87877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 8.82 71.98 0.64 -1.08 16 2 C 0.12 1.64 1.00 -10.86 -0.01 1.63 16 3 O -0.58 -10.17 12.17 -148.98 -1.81 -11.98 16 4 C -0.14 -1.41 4.89 30.62 0.15 -1.26 16 5 C -0.13 -1.67 5.94 30.67 0.18 -1.49 16 6 C 0.11 1.84 6.48 86.36 0.56 2.40 16 7 N -0.99 -21.74 3.24 -513.86 -1.66 -23.40 16 8 S 2.72 79.48 5.73 -56.49 -0.32 79.15 16 9 O -0.98 -32.33 15.87 -128.00 -2.03 -34.36 16 10 O -0.98 -33.21 15.86 -128.00 -2.03 -35.24 16 11 C -0.70 -22.33 5.97 22.27 0.13 -22.20 16 12 C -0.02 -0.68 9.52 22.27 0.21 -0.47 16 13 C -0.15 -5.84 9.70 22.27 0.22 -5.63 16 14 C 0.00 -0.13 5.07 -19.87 -0.10 -0.23 16 15 C 0.05 2.44 5.10 29.10 0.15 2.59 16 16 C -0.53 -29.12 9.09 25.60 0.23 -28.88 16 17 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 18 C 0.01 0.36 5.46 84.65 0.46 0.82 16 19 N -0.93 -54.43 13.29 21.45 0.28 -54.14 16 20 Si 0.97 42.60 29.54 68.60 2.03 44.62 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 24 C -0.15 -5.83 9.70 22.27 0.22 -5.61 16 25 C -0.02 -0.65 9.52 22.27 0.21 -0.44 16 26 C 0.12 2.20 5.39 86.22 0.46 2.67 16 27 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.39 3.54 9.05 -74.06 -0.67 2.87 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 1.00 7.61 -2.38 -0.02 0.98 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.65 6.92 -2.39 -0.02 1.63 16 37 H 0.15 4.21 7.62 -2.91 -0.02 4.18 16 38 H 0.13 4.79 8.06 -2.91 -0.02 4.76 16 39 H 0.01 0.62 8.09 -2.39 -0.02 0.60 16 40 H 0.01 0.64 8.09 -2.39 -0.02 0.62 16 41 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 42 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 43 H 0.15 4.16 7.62 -2.91 -0.02 4.14 16 44 H 0.09 1.87 6.91 -2.39 -0.02 1.86 16 45 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -73.61 377.89 -1.52 -75.13 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.32 Total: 17.42 kcal Atomic # 6 Polarization: -60.90 SS G_CDS: 3.71 Total: -57.19 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -1.38 Total: -77.54 kcal Atomic # 8 Polarization: -75.72 SS G_CDS: -5.88 Total: -81.59 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: 79.48 SS G_CDS: -0.32 Total: 79.15 kcal Total: -73.61 -1.52 -75.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885081215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.062 kcal (2) G-P(sol) polarization free energy of solvation -73.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds