Wall clock time and date at job start Sat Apr 11 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.51841 * 2 1 4 4 S 1.65596 * 120.00349 * 317.53724 * 3 2 1 5 5 O 1.42103 * 106.40039 * 181.55540 * 4 3 2 6 6 O 1.42093 * 106.40580 * 314.47796 * 4 3 2 7 7 C 1.76200 * 107.21394 * 68.02015 * 4 3 2 8 8 C 1.38244 * 119.99593 * 252.27598 * 7 4 3 9 9 C 1.38235 * 119.99487 * 179.81113 * 8 7 4 10 10 C 1.38234 * 120.00272 * 0.39986 * 9 8 7 11 11 C 1.50703 * 119.99884 * 179.83613 * 10 9 8 12 12 C 1.50701 * 109.46785 * 270.01750 * 11 10 9 13 13 H 1.07999 * 120.00481 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99872 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00087 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00054 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47361 * 59.99702 * 16 14 12 18 18 H 1.48504 * 109.46986 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46795 * 299.99403 * 16 14 12 20 20 C 1.38233 * 119.99820 * 359.85351 * 10 9 8 21 21 C 1.38225 * 120.00232 * 359.95604 * 20 10 9 22 22 C 1.53180 * 109.52205 * 120.12323 * 2 1 3 23 23 C 1.53177 * 109.03229 * 176.94631 * 22 2 1 24 24 C 1.53089 * 109.16930 * 303.02119 * 23 22 2 25 25 O 1.42906 * 109.41165 * 57.61040 * 24 23 22 26 26 C 1.42906 * 114.09637 * 298.84130 * 25 24 23 27 27 H 1.09000 * 109.47456 * 69.22277 * 1 2 3 28 28 H 1.09000 * 109.47288 * 189.22042 * 1 2 3 29 29 H 1.09004 * 109.47449 * 309.22261 * 1 2 3 30 30 H 0.97002 * 119.99473 * 137.26972 * 3 2 1 31 31 H 1.07996 * 120.00123 * 359.97438 * 8 7 4 32 32 H 1.08001 * 119.99621 * 180.23221 * 9 8 7 33 33 H 1.09003 * 109.47343 * 30.02032 * 11 10 9 34 34 H 1.09008 * 109.47014 * 150.02039 * 11 10 9 35 35 H 0.96991 * 120.00371 * 179.97438 * 15 14 12 36 36 H 1.08003 * 119.99527 * 179.97438 * 20 10 9 37 37 H 1.08003 * 120.00552 * 179.97438 * 21 20 10 38 38 H 1.08996 * 109.54123 * 296.82091 * 22 2 1 39 39 H 1.09002 * 109.53631 * 57.08294 * 22 2 1 40 40 H 1.09002 * 109.52200 * 62.93211 * 23 22 2 41 41 H 1.09007 * 109.51696 * 183.05022 * 23 22 2 42 42 H 1.08996 * 109.48487 * 177.59336 * 24 23 22 43 43 H 1.09003 * 109.47855 * 297.63238 * 24 23 22 44 44 H 1.08997 * 109.48064 * 301.17339 * 26 25 24 45 45 H 1.09007 * 109.48079 * 181.13994 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3808 0.0000 4 16 1.2990 2.5148 -0.9681 5 8 2.0161 3.7255 -0.7700 6 8 1.1349 1.9084 -2.2427 7 6 -0.3223 2.7874 -0.3343 8 6 -1.4224 2.3090 -1.0213 9 6 -2.6942 2.5194 -0.5220 10 6 -2.8663 3.2154 0.6599 11 6 -4.2530 3.4480 1.2023 12 6 -4.7960 4.7425 0.6542 13 1 -4.1972 5.3371 -0.0198 14 6 -6.0575 5.1678 1.0132 15 7 -6.7866 4.4440 1.8343 16 14 -6.7310 6.7720 0.3333 17 1 -6.7858 6.6973 -1.1487 18 1 -8.0969 7.0019 0.8688 19 1 -5.8453 7.8925 0.7401 20 6 -1.7665 3.6982 1.3441 21 6 -0.4946 3.4844 0.8469 22 6 2.0419 -0.7246 1.2488 23 6 3.5716 -0.7851 1.1993 24 6 4.0057 -1.4794 -0.0942 25 8 3.4707 -0.7727 -1.2152 26 6 2.0428 -0.7246 -1.2472 27 1 -0.3634 0.3645 -0.9608 28 1 -0.3634 -1.0144 0.1647 29 1 -0.3634 0.6498 0.7961 30 1 2.7631 1.6317 0.5701 31 1 -1.2882 1.7686 -1.9466 32 1 -3.5534 2.1424 -1.0567 33 1 -4.9029 2.6256 0.9031 34 1 -4.2132 3.5023 2.2903 35 1 -7.6739 4.7434 2.0872 36 1 -1.9011 4.2423 2.2673 37 1 0.3647 3.8620 1.3812 38 1 1.7269 -0.1819 2.1400 39 1 1.6375 -1.7365 1.2745 40 1 3.9771 0.2264 1.2236 41 1 3.9418 -1.3465 2.0572 42 1 5.0939 -1.4872 -0.1551 43 1 3.6338 -2.5040 -0.0992 44 1 1.6453 -1.7393 -1.2674 45 1 1.7171 -0.1887 -2.1387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885082886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:17 Heat of formation + Delta-G solvation = -127.595587 kcal Electronic energy + Delta-G solvation = -28275.595720 eV Core-core repulsion = 24383.613094 eV Total energy + Delta-G solvation = -3891.982626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.88415 -40.25048 -38.35037 -36.96340 -36.77589 -35.59844 -33.45351 -33.29199 -32.08705 -31.44894 -29.30907 -27.81830 -26.02996 -25.56049 -23.74994 -23.21228 -22.46288 -21.27836 -20.17580 -18.95808 -18.63911 -18.51464 -17.55420 -16.93775 -16.86302 -16.78250 -16.06587 -16.02503 -15.76154 -15.47758 -15.30694 -15.21074 -14.61313 -14.46569 -14.14910 -13.97328 -13.66829 -13.50797 -13.44337 -13.38933 -13.21527 -13.15919 -13.03434 -12.74406 -12.70942 -12.65374 -12.58519 -12.16322 -12.07621 -12.01318 -11.67800 -11.54381 -11.35489 -11.24571 -10.97875 -10.64855 -10.05068 -9.91401 -9.83561 -8.26990 -6.39541 -0.60989 -0.04173 0.42579 1.38428 1.39627 1.48109 1.99011 2.34702 2.58039 2.80120 3.05689 3.06172 3.38000 3.57161 3.80339 3.82520 3.88536 3.98021 4.04701 4.17863 4.20406 4.32166 4.48925 4.50158 4.53108 4.60578 4.74731 4.77744 4.83464 4.90430 4.92527 4.94207 5.01811 5.09852 5.12750 5.25629 5.26593 5.27260 5.31581 5.35803 5.41770 5.67488 5.88986 5.93911 6.09471 6.10835 6.35473 6.72344 7.29511 8.82755 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024171 B = 0.002837 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.125147 B = 9867.670176 C =10272.865398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.153 3.847 3 N -1.090 6.090 4 S 2.721 3.279 5 O -0.994 6.994 6 O -0.978 6.978 7 C -0.694 4.694 8 C -0.016 4.016 9 C -0.152 4.152 10 C -0.001 4.001 11 C 0.049 3.951 12 C -0.535 4.535 13 H 0.053 0.947 14 C 0.011 3.989 15 N -0.925 5.925 16 Si 0.962 3.038 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.269 1.269 20 C -0.154 4.154 21 C -0.016 4.016 22 C -0.118 4.118 23 C -0.156 4.156 24 C 0.047 3.953 25 O -0.397 6.397 26 C 0.035 3.965 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.425 0.575 31 H 0.155 0.845 32 H 0.128 0.872 33 H 0.013 0.987 34 H 0.013 0.987 35 H 0.267 0.733 36 H 0.127 0.873 37 H 0.151 0.849 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.610 -14.451 -0.391 25.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.064 3.936 3 N -0.852 5.852 4 S 2.812 3.188 5 O -0.984 6.984 6 O -0.968 6.968 7 C -0.781 4.781 8 C -0.035 4.035 9 C -0.170 4.170 10 C -0.001 4.001 11 C 0.012 3.988 12 C -0.573 4.573 13 H 0.071 0.929 14 C -0.188 4.188 15 N -0.564 5.564 16 Si 0.786 3.214 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.194 1.194 20 C -0.173 4.173 21 C -0.035 4.035 22 C -0.157 4.157 23 C -0.194 4.194 24 C -0.029 4.029 25 O -0.316 6.316 26 C -0.043 4.043 27 H 0.084 0.916 28 H 0.121 0.879 29 H 0.092 0.908 30 H 0.263 0.737 31 H 0.173 0.827 32 H 0.146 0.854 33 H 0.032 0.968 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.145 0.855 37 H 0.169 0.831 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 20.792 -14.019 -1.279 25.109 hybrid contribution -1.435 0.948 0.784 1.890 sum 19.357 -13.070 -0.495 23.361 Atomic orbital electron populations 1.22847 0.93254 1.06102 1.03589 1.20893 0.93987 0.80708 0.97997 1.55291 1.47055 1.19998 1.62856 1.00870 0.72805 0.71959 0.73198 1.93539 1.72268 1.46092 1.86545 1.93494 1.86767 1.77128 1.39362 1.30712 1.22100 1.16355 1.08970 1.20982 0.90928 0.93786 0.97781 1.21247 0.97766 1.01490 0.96543 1.20762 0.96441 0.89606 0.93308 1.18247 0.88584 0.96300 0.95635 1.21279 1.00837 1.06433 1.28701 0.92856 1.25837 0.97070 1.00765 0.95161 1.70040 1.11386 1.39957 1.35047 0.85552 0.77539 0.79395 0.78922 1.19406 1.20397 1.19444 1.21243 0.92197 1.02137 1.01688 1.20900 0.97833 0.92180 0.92609 1.21911 0.96068 1.01699 0.95981 1.22224 0.95679 1.02391 0.99094 1.22838 0.99715 0.95080 0.85268 1.87963 1.20308 1.76910 1.46439 1.23432 0.81390 1.01082 0.98393 0.91555 0.87916 0.90761 0.73725 0.82736 0.85369 0.96837 0.96908 0.92385 0.85456 0.83102 0.89725 0.88579 0.91310 0.88476 0.88076 0.91868 0.90188 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.45 6.61 71.98 0.48 -2.98 16 2 C 0.15 2.45 0.72 3.69 0.00 2.45 16 3 N -1.09 -20.38 5.30 -151.86 -0.80 -21.19 16 4 S 2.72 71.65 5.27 -56.49 -0.30 71.35 16 5 O -0.99 -32.02 17.82 -128.00 -2.28 -34.31 16 6 O -0.98 -28.97 13.92 -128.00 -1.78 -30.75 16 7 C -0.69 -19.90 3.67 22.27 0.08 -19.82 16 8 C -0.02 -0.47 7.11 22.27 0.16 -0.31 16 9 C -0.15 -5.42 9.70 22.27 0.22 -5.21 16 10 C 0.00 -0.04 5.07 -19.87 -0.10 -0.14 16 11 C 0.05 2.48 5.10 29.10 0.15 2.63 16 12 C -0.53 -29.52 9.09 25.60 0.23 -29.28 16 13 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 14 C 0.01 0.60 5.46 84.65 0.46 1.06 16 15 N -0.93 -53.84 13.29 21.45 0.28 -53.56 16 16 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 20 C -0.15 -5.51 9.70 22.27 0.22 -5.30 16 21 C -0.02 -0.48 9.55 22.27 0.21 -0.27 16 22 C -0.12 -1.26 4.92 30.71 0.15 -1.11 16 23 C -0.16 -1.49 5.95 30.68 0.18 -1.30 16 24 C 0.05 0.56 6.84 72.01 0.49 1.06 16 25 O -0.40 -7.79 10.67 -148.98 -1.59 -9.38 16 26 C 0.04 0.64 5.59 72.01 0.40 1.04 16 27 H 0.07 1.30 4.39 -2.39 -0.01 1.29 16 28 H 0.10 1.31 8.12 -2.39 -0.02 1.29 16 29 H 0.07 1.44 6.82 -2.38 -0.02 1.42 16 30 H 0.43 6.36 7.26 -96.74 -0.70 5.66 16 31 H 0.16 3.96 6.72 -2.91 -0.02 3.94 16 32 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 33 H 0.01 0.71 8.09 -2.39 -0.02 0.69 16 34 H 0.01 0.67 8.09 -2.38 -0.02 0.65 16 35 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.15 3.60 8.05 -2.91 -0.02 3.58 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 0.72 6.80 -2.39 -0.02 0.70 16 41 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.10 2.26 6.02 -2.38 -0.01 2.24 16 Total: -1.00 -70.99 363.61 -0.81 -71.79 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.30 Total: 18.06 kcal Atomic # 6 Polarization: -60.81 SS G_CDS: 3.34 Total: -57.47 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -0.52 Total: -74.74 kcal Atomic # 8 Polarization: -68.78 SS G_CDS: -5.65 Total: -74.43 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 71.65 SS G_CDS: -0.30 Total: 71.35 kcal Total: -70.99 -0.81 -71.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885082886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.802 kcal (2) G-P(sol) polarization free energy of solvation -70.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds