Wall clock time and date at job start Sat Apr 11 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 C 1.52996 * 109.47175 * 124.72247 * 3 2 1 5 5 H 1.08998 * 109.47244 * 304.99940 * 4 3 2 6 6 C 1.52994 * 109.47244 * 64.99784 * 4 3 2 7 7 O 1.42905 * 109.47412 * 185.00096 * 6 4 3 8 8 C 1.53001 * 109.46931 * 185.00067 * 4 3 2 9 9 N 1.46507 * 109.46760 * 175.00139 * 8 4 3 10 10 S 1.65605 * 119.99932 * 165.00051 * 9 8 4 11 11 O 1.42091 * 106.40034 * 178.53805 * 10 9 8 12 12 O 1.42106 * 106.39770 * 311.45613 * 10 9 8 13 13 C 1.76205 * 107.21621 * 64.99515 * 10 9 8 14 14 C 1.38238 * 119.99854 * 269.72741 * 13 10 9 15 15 C 1.38229 * 119.99653 * 179.77221 * 14 13 10 16 16 C 1.38236 * 120.00361 * 0.47975 * 15 14 13 17 17 C 1.50694 * 120.00357 * 179.76754 * 16 15 14 18 18 C 1.50699 * 109.47400 * 270.02541 * 17 16 15 19 19 H 1.07995 * 120.00123 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99824 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00161 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46863 * 59.99791 * 22 20 18 24 24 H 1.48501 * 109.47101 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47013 * 300.00003 * 22 20 18 26 26 C 1.38237 * 119.99472 * 359.79861 * 16 15 14 27 27 C 1.38229 * 120.00030 * 90.00331 * 13 10 9 28 28 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 29 29 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 30 30 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 31 31 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 32 32 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 33 33 H 1.09003 * 109.47066 * 305.00027 * 6 4 3 34 34 H 1.09003 * 109.47381 * 64.99949 * 6 4 3 35 35 H 0.96694 * 114.00292 * 180.02562 * 7 6 4 36 36 H 1.08995 * 109.46941 * 294.99298 * 8 4 3 37 37 H 1.08991 * 109.47364 * 55.00047 * 8 4 3 38 38 H 0.97003 * 120.00365 * 344.99478 * 9 8 4 39 39 H 1.07997 * 119.99863 * 359.97438 * 14 13 10 40 40 H 1.08003 * 120.00406 * 180.25104 * 15 14 13 41 41 H 1.09006 * 109.47258 * 30.02638 * 17 16 15 42 42 H 1.08999 * 109.47028 * 150.02478 * 17 16 15 43 43 H 0.97001 * 120.00110 * 180.02562 * 21 20 18 44 44 H 1.08001 * 119.99593 * 179.97438 * 26 16 15 45 45 H 1.08003 * 120.00133 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0301 1.3360 1.1856 5 1 2.4795 1.1521 2.1081 6 6 4.0957 0.2534 1.0032 7 8 4.9283 0.2042 2.1636 8 6 3.7039 2.7077 1.2587 9 7 4.5381 2.7785 2.4609 10 16 5.6666 3.9806 2.6161 11 8 6.2761 3.7971 3.8864 12 8 6.3989 4.0030 1.3985 13 6 4.7928 5.5085 2.6994 14 6 4.5139 6.2092 1.5409 15 6 3.8244 7.4055 1.6058 16 6 3.4224 7.9061 2.8301 17 6 2.6753 9.2128 2.9013 18 6 3.6580 10.3463 3.0436 19 1 4.7177 10.1411 3.0785 20 6 3.2043 11.6455 3.1293 21 7 1.9139 11.8955 3.0863 22 14 4.4225 13.0507 3.3049 23 1 5.3336 13.0654 2.1323 24 1 3.6862 14.3383 3.3752 25 1 5.2163 12.8654 4.5461 26 6 3.7064 7.2081 3.9890 27 6 4.3914 6.0092 3.9236 28 1 -0.5400 0.9353 -0.0045 29 1 -0.5400 -0.9353 0.0045 30 1 1.8500 -0.9353 0.0046 31 1 2.6252 1.4004 -0.9293 32 1 1.3582 2.1318 0.0846 33 1 3.6115 -0.7129 0.8623 34 1 4.7040 0.4859 0.1291 35 1 5.6283 -0.4613 2.1175 36 1 4.3259 2.8544 0.3757 37 1 2.9413 3.4854 1.2993 38 1 4.4295 2.1213 3.1661 39 1 4.8319 5.8204 0.5848 40 1 3.6028 7.9510 0.7004 41 1 2.0932 9.3488 1.9898 42 1 2.0059 9.2022 3.7615 43 1 1.5946 12.8095 3.1462 44 1 3.3927 7.5994 4.9456 45 1 4.6128 5.4638 4.8291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885086902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:23 Heat of formation + Delta-G solvation = -99.414645 kcal Electronic energy + Delta-G solvation = -26856.032118 eV Core-core repulsion = 22965.271509 eV Total energy + Delta-G solvation = -3890.760608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.77803 -38.66434 -37.00639 -35.86944 -35.63925 -34.72464 -33.65516 -31.53628 -31.40679 -30.53976 -27.40039 -26.14956 -25.69638 -23.69855 -22.31615 -21.25279 -20.84693 -20.04821 -19.17347 -17.90982 -17.50589 -17.12183 -16.45699 -16.33642 -16.02087 -15.33364 -15.11917 -15.02892 -14.48421 -14.35153 -14.14858 -13.77842 -13.58834 -13.25840 -13.20109 -13.06824 -12.77964 -12.41409 -12.20438 -11.99772 -11.90928 -11.81051 -11.71196 -11.66643 -11.46645 -11.16723 -11.00375 -10.91558 -10.88278 -10.49184 -10.45391 -10.23826 -9.75530 -9.72218 -9.65923 -9.37772 -8.55921 -8.52144 -8.35242 -6.16095 -4.21048 0.63663 1.37675 1.82835 1.89637 3.21107 3.26942 3.30917 3.34733 3.83667 3.90359 4.16383 4.26276 4.38544 4.46041 4.60833 4.76179 4.82709 4.88952 5.11740 5.17281 5.18579 5.20521 5.24570 5.28732 5.31960 5.46234 5.50770 5.66947 5.74658 5.75313 5.87057 5.94358 5.98044 6.24791 6.28604 6.36883 6.37660 6.54950 6.86975 6.93030 7.09956 7.31024 7.36302 7.45900 7.60944 7.78952 8.14661 8.83528 9.43791 10.93920 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015451 B = 0.002600 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.760071 B =10764.613851 C =12007.994139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C -0.089 4.089 4 C -0.089 4.089 5 H 0.088 0.912 6 C 0.080 3.920 7 O -0.569 6.569 8 C 0.125 3.875 9 N -1.105 6.105 10 S 2.701 3.299 11 O -0.968 6.968 12 O -0.969 6.969 13 C -0.705 4.705 14 C -0.026 4.026 15 C -0.146 4.146 16 C 0.025 3.975 17 C 0.040 3.960 18 C -0.518 4.518 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.899 3.101 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.146 4.146 27 C -0.022 4.022 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.379 0.621 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.422 0.578 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.265 0.735 44 H 0.128 0.872 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.505 -25.617 -5.721 26.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.175 4.175 3 C -0.127 4.127 4 C -0.109 4.109 5 H 0.106 0.894 6 C 0.002 3.998 7 O -0.375 6.375 8 C -0.002 4.002 9 N -0.867 5.867 10 S 2.793 3.207 11 O -0.959 6.959 12 O -0.959 6.959 13 C -0.794 4.794 14 C -0.045 4.045 15 C -0.165 4.165 16 C 0.025 3.975 17 C 0.003 3.997 18 C -0.556 4.556 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.165 4.165 27 C -0.041 4.041 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.226 0.774 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.259 0.741 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.146 0.854 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.106 -24.974 -5.639 25.603 hybrid contribution 0.232 0.614 0.192 0.684 sum 0.127 -24.360 -5.447 24.962 Atomic orbital electron populations 1.23915 0.95987 1.02054 1.00708 1.22928 0.96037 0.98270 1.00299 1.20732 0.97866 0.96240 0.97904 1.21350 0.95429 0.94055 1.00109 0.89361 1.22271 0.91804 0.97699 0.87993 1.86408 1.47682 1.62369 1.41020 1.21259 0.94192 0.97190 0.87517 1.55365 1.57340 1.45264 1.28724 1.01446 0.73099 0.72977 0.73217 1.93552 1.74003 1.85916 1.42408 1.93536 1.68635 1.86913 1.46853 1.30426 1.24651 1.24244 1.00065 1.20776 0.93276 0.94335 0.96148 1.21235 1.00622 0.96042 0.98585 1.21104 0.89612 0.94788 0.92030 1.18524 0.95122 0.87086 0.98937 1.20937 0.92869 0.90282 1.51484 0.92348 1.25001 0.95353 0.98909 0.94861 1.69936 1.12804 1.20618 1.49678 0.86538 0.80958 0.80940 0.78951 1.20039 1.21111 1.20029 1.21246 1.01010 0.95093 0.99151 1.20773 0.92576 0.95428 0.95356 0.88335 0.88548 0.87389 0.90220 0.90114 0.93483 0.93300 0.77372 0.90435 0.91415 0.74075 0.85340 0.85411 0.94754 0.94756 0.92583 0.85402 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.13 14.32 29.01 0.42 -0.71 16 2 C -0.16 -0.92 9.03 -36.03 -0.33 -1.24 16 3 C -0.09 -0.53 5.13 -27.88 -0.14 -0.68 16 4 C -0.09 -0.64 2.24 -90.62 -0.20 -0.84 16 5 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 6 C 0.08 0.52 6.32 37.15 0.23 0.76 16 7 O -0.57 -4.26 11.20 -35.23 -0.39 -4.66 16 8 C 0.13 1.14 5.61 -4.04 -0.02 1.12 16 9 N -1.11 -12.02 5.06 -10.61 -0.05 -12.08 16 10 S 2.70 39.21 5.74 -107.50 -0.62 38.59 16 11 O -0.97 -16.51 17.28 -57.17 -0.99 -17.50 16 12 O -0.97 -16.09 16.75 -57.17 -0.96 -17.04 16 13 C -0.70 -11.41 5.95 -39.58 -0.24 -11.64 16 14 C -0.03 -0.43 9.52 -39.58 -0.38 -0.80 16 15 C -0.15 -2.72 9.70 -39.59 -0.38 -3.11 16 16 C 0.03 0.52 5.07 -104.63 -0.53 -0.01 16 17 C 0.04 0.99 5.10 -29.04 -0.15 0.84 16 18 C -0.52 -14.15 9.09 -34.44 -0.31 -14.46 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 22 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.15 -2.77 9.70 -39.58 -0.38 -3.16 16 27 C -0.02 -0.37 9.52 -39.59 -0.38 -0.75 16 28 H 0.10 0.57 7.84 -52.49 -0.41 0.16 16 29 H 0.10 0.49 8.06 -52.49 -0.42 0.07 16 30 H 0.11 0.54 6.86 -52.49 -0.36 0.18 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.48 7.79 -51.93 -0.40 0.08 16 33 H 0.05 0.24 6.54 -51.93 -0.34 -0.10 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.38 1.44 9.12 45.56 0.42 1.86 16 36 H 0.08 0.70 7.75 -51.93 -0.40 0.30 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.42 4.24 7.23 -34.47 -0.25 3.99 16 39 H 0.13 1.80 7.61 -52.49 -0.40 1.40 16 40 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 41 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 42 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.13 2.31 8.06 -52.49 -0.42 1.88 16 45 H 0.13 1.91 7.62 -52.48 -0.40 1.51 16 LS Contribution 389.27 15.07 5.87 5.87 Total: -1.00 -34.27 389.27 -10.21 -44.49 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.89 Total: 4.10 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: -2.89 Total: -33.09 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.68 Total: -36.99 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -2.34 Total: -39.20 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 39.21 SS G_CDS: -0.62 Total: 38.59 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.27 -10.21 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885086902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.929 kcal (2) G-P(sol) polarization free energy of solvation -34.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds