Wall clock time and date at job start Sat Apr 11 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 C 1.52996 * 109.47175 * 124.72247 * 3 2 1 5 5 H 1.08998 * 109.47244 * 304.99940 * 4 3 2 6 6 C 1.52994 * 109.47244 * 64.99784 * 4 3 2 7 7 O 1.42905 * 109.47412 * 185.00096 * 6 4 3 8 8 C 1.53001 * 109.46931 * 185.00067 * 4 3 2 9 9 N 1.46507 * 109.46760 * 175.00139 * 8 4 3 10 10 S 1.65605 * 119.99932 * 165.00051 * 9 8 4 11 11 O 1.42091 * 106.40034 * 178.53805 * 10 9 8 12 12 O 1.42106 * 106.39770 * 311.45613 * 10 9 8 13 13 C 1.76205 * 107.21621 * 64.99515 * 10 9 8 14 14 C 1.38238 * 119.99854 * 269.72741 * 13 10 9 15 15 C 1.38229 * 119.99653 * 179.77221 * 14 13 10 16 16 C 1.38236 * 120.00361 * 0.47975 * 15 14 13 17 17 C 1.50694 * 120.00357 * 179.76754 * 16 15 14 18 18 C 1.50699 * 109.47400 * 270.02541 * 17 16 15 19 19 H 1.07995 * 120.00123 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99824 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00161 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46863 * 59.99791 * 22 20 18 24 24 H 1.48501 * 109.47101 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47013 * 300.00003 * 22 20 18 26 26 C 1.38237 * 119.99472 * 359.79861 * 16 15 14 27 27 C 1.38229 * 120.00030 * 90.00331 * 13 10 9 28 28 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 29 29 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 30 30 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 31 31 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 32 32 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 33 33 H 1.09003 * 109.47066 * 305.00027 * 6 4 3 34 34 H 1.09003 * 109.47381 * 64.99949 * 6 4 3 35 35 H 0.96694 * 114.00292 * 180.02562 * 7 6 4 36 36 H 1.08995 * 109.46941 * 294.99298 * 8 4 3 37 37 H 1.08991 * 109.47364 * 55.00047 * 8 4 3 38 38 H 0.97003 * 120.00365 * 344.99478 * 9 8 4 39 39 H 1.07997 * 119.99863 * 359.97438 * 14 13 10 40 40 H 1.08003 * 120.00406 * 180.25104 * 15 14 13 41 41 H 1.09006 * 109.47258 * 30.02638 * 17 16 15 42 42 H 1.08999 * 109.47028 * 150.02478 * 17 16 15 43 43 H 0.97001 * 120.00110 * 180.02562 * 21 20 18 44 44 H 1.08001 * 119.99593 * 179.97438 * 26 16 15 45 45 H 1.08003 * 120.00133 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0301 1.3360 1.1856 5 1 2.4795 1.1521 2.1081 6 6 4.0957 0.2534 1.0032 7 8 4.9283 0.2042 2.1636 8 6 3.7039 2.7077 1.2587 9 7 4.5381 2.7785 2.4609 10 16 5.6666 3.9806 2.6161 11 8 6.2761 3.7971 3.8864 12 8 6.3989 4.0030 1.3985 13 6 4.7928 5.5085 2.6994 14 6 4.5139 6.2092 1.5409 15 6 3.8244 7.4055 1.6058 16 6 3.4224 7.9061 2.8301 17 6 2.6753 9.2128 2.9013 18 6 3.6580 10.3463 3.0436 19 1 4.7177 10.1411 3.0785 20 6 3.2043 11.6455 3.1293 21 7 1.9139 11.8955 3.0863 22 14 4.4225 13.0507 3.3049 23 1 5.3336 13.0654 2.1323 24 1 3.6862 14.3383 3.3752 25 1 5.2163 12.8654 4.5461 26 6 3.7064 7.2081 3.9890 27 6 4.3914 6.0092 3.9236 28 1 -0.5400 0.9353 -0.0045 29 1 -0.5400 -0.9353 0.0045 30 1 1.8500 -0.9353 0.0046 31 1 2.6252 1.4004 -0.9293 32 1 1.3582 2.1318 0.0846 33 1 3.6115 -0.7129 0.8623 34 1 4.7040 0.4859 0.1291 35 1 5.6283 -0.4613 2.1175 36 1 4.3259 2.8544 0.3757 37 1 2.9413 3.4854 1.2993 38 1 4.4295 2.1213 3.1661 39 1 4.8319 5.8204 0.5848 40 1 3.6028 7.9510 0.7004 41 1 2.0932 9.3488 1.9898 42 1 2.0059 9.2022 3.7615 43 1 1.5946 12.8095 3.1462 44 1 3.3927 7.5994 4.9456 45 1 4.6128 5.4638 4.8291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885086902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:22 Heat of formation + Delta-G solvation = -123.617353 kcal Electronic energy + Delta-G solvation = -26857.081626 eV Core-core repulsion = 22965.271509 eV Total energy + Delta-G solvation = -3891.810116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.22572 -39.24489 -38.26077 -36.91118 -36.38205 -35.60499 -35.41514 -33.31075 -32.01479 -31.95341 -29.23633 -26.61101 -26.38837 -25.58468 -23.72371 -22.46590 -21.82979 -20.67599 -20.15485 -18.95308 -18.58426 -18.37215 -18.01989 -17.27564 -16.90183 -16.71834 -16.25759 -15.98164 -15.79157 -15.52960 -15.23916 -14.88365 -14.62829 -14.44210 -14.15802 -14.00303 -13.84510 -13.78141 -13.40348 -13.37656 -13.18304 -13.12838 -13.11010 -12.66313 -12.65545 -12.52909 -12.40253 -12.13065 -12.03035 -11.71102 -11.66577 -11.53131 -11.40488 -10.74308 -10.65188 -10.27975 -10.16419 -9.95635 -9.93447 -8.27170 -6.39952 -0.55349 -0.05009 0.40383 1.38335 1.39968 1.45803 1.48456 2.11730 2.35239 2.60226 2.86188 3.05375 3.34499 3.45260 3.72938 3.88463 3.95836 3.98806 4.16503 4.30225 4.32539 4.37064 4.47899 4.48823 4.56027 4.63215 4.70284 4.75674 4.82300 4.91944 4.93934 5.03328 5.08207 5.12540 5.21637 5.25356 5.25968 5.34018 5.36326 5.66866 5.82086 5.86613 5.93093 5.94620 6.10083 6.27107 6.71585 7.01829 7.29025 8.82722 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015451 B = 0.002600 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.760071 B =10764.613851 C =12007.994139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C -0.088 4.088 4 C -0.084 4.084 5 H 0.084 0.916 6 C 0.077 3.923 7 O -0.589 6.589 8 C 0.113 3.887 9 N -1.090 6.090 10 S 2.726 3.274 11 O -0.991 6.991 12 O -0.985 6.985 13 C -0.702 4.702 14 C -0.019 4.019 15 C -0.153 4.153 16 C -0.004 4.004 17 C 0.049 3.951 18 C -0.535 4.535 19 H 0.053 0.947 20 C 0.010 3.990 21 N -0.925 5.925 22 Si 0.963 3.037 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.156 4.156 27 C -0.021 4.021 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.394 0.606 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.429 0.571 39 H 0.157 0.843 40 H 0.131 0.869 41 H 0.014 0.986 42 H 0.012 0.988 43 H 0.268 0.732 44 H 0.128 0.872 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.624 -27.362 -6.278 28.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.177 4.177 3 C -0.126 4.126 4 C -0.104 4.104 5 H 0.102 0.898 6 C 0.000 4.000 7 O -0.397 6.397 8 C -0.013 4.013 9 N -0.855 5.855 10 S 2.816 3.184 11 O -0.981 6.981 12 O -0.975 6.975 13 C -0.788 4.788 14 C -0.038 4.038 15 C -0.172 4.172 16 C -0.004 4.004 17 C 0.012 3.988 18 C -0.573 4.573 19 H 0.071 0.929 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.788 3.212 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.194 1.194 26 C -0.175 4.175 27 C -0.040 4.040 28 H 0.114 0.886 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.244 0.756 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.268 0.732 39 H 0.175 0.825 40 H 0.149 0.851 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.076 0.924 44 H 0.146 0.854 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.024 -26.717 -6.191 27.444 hybrid contribution -0.133 0.998 0.338 1.062 sum 0.891 -25.719 -5.854 26.391 Atomic orbital electron populations 1.24037 0.96281 1.02370 1.00931 1.23025 0.96038 0.98574 1.00058 1.20721 0.97676 0.96372 0.97790 1.21307 0.95647 0.93049 1.00405 0.89799 1.22335 0.91682 0.98222 0.87775 1.86348 1.48470 1.63325 1.41559 1.21541 0.94236 0.98815 0.86671 1.55063 1.56976 1.43801 1.29621 1.00695 0.72950 0.72541 0.72213 1.93520 1.74977 1.86088 1.43542 1.93516 1.69437 1.87099 1.47454 1.30866 1.23198 1.25066 0.99689 1.21044 0.92032 0.93173 0.97593 1.21310 1.01014 0.97029 0.97863 1.20818 0.91630 0.94074 0.93900 1.18252 0.94629 0.89047 0.96851 1.21262 0.93087 0.91576 1.51333 0.92857 1.25860 0.97097 1.01526 0.94426 1.70045 1.14556 1.21313 1.50534 0.85524 0.78744 0.77835 0.79136 1.19329 1.20334 1.19433 1.21297 1.01639 0.95949 0.98592 1.21007 0.91658 0.94581 0.96720 0.88611 0.87833 0.86349 0.89342 0.90316 0.91859 0.93034 0.75649 0.90038 0.90914 0.73208 0.82510 0.85063 0.96727 0.96941 0.92353 0.85378 0.82994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.08 14.32 67.78 0.97 -1.11 16 2 C -0.16 -1.54 9.03 25.64 0.23 -1.31 16 3 C -0.09 -0.86 5.13 29.85 0.15 -0.71 16 4 C -0.08 -1.01 2.24 -10.80 -0.02 -1.03 16 5 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 6 C 0.08 0.81 6.32 71.98 0.45 1.26 16 7 O -0.59 -7.43 11.20 -148.98 -1.67 -9.09 16 8 C 0.11 1.81 5.61 86.38 0.48 2.29 16 9 N -1.09 -21.20 5.06 -187.49 -0.95 -22.15 16 10 S 2.73 73.16 5.74 -56.49 -0.32 72.83 16 11 O -0.99 -31.75 17.28 -128.00 -2.21 -33.97 16 12 O -0.99 -30.29 16.75 -128.00 -2.14 -32.44 16 13 C -0.70 -21.44 5.95 22.27 0.13 -21.31 16 14 C -0.02 -0.61 9.52 22.27 0.21 -0.39 16 15 C -0.15 -5.71 9.70 22.27 0.22 -5.49 16 16 C 0.00 -0.17 5.07 -19.87 -0.10 -0.27 16 17 C 0.05 2.53 5.10 29.10 0.15 2.68 16 18 C -0.53 -29.97 9.09 25.60 0.23 -29.74 16 19 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 20 C 0.01 0.56 5.46 84.66 0.46 1.02 16 21 N -0.93 -54.41 13.29 21.45 0.28 -54.12 16 22 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 C -0.16 -5.96 9.70 22.27 0.22 -5.74 16 27 C -0.02 -0.67 9.52 22.27 0.21 -0.46 16 28 H 0.10 1.02 7.84 -2.91 -0.02 1.00 16 29 H 0.10 0.90 8.06 -2.91 -0.02 0.88 16 30 H 0.12 0.88 6.86 -2.91 -0.02 0.86 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.81 7.79 -2.39 -0.02 0.79 16 33 H 0.06 0.46 6.54 -2.39 -0.02 0.44 16 34 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.39 2.12 9.12 -74.06 -0.68 1.44 16 36 H 0.08 1.27 7.75 -2.39 -0.02 1.25 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.43 7.61 7.23 -96.74 -0.70 6.91 16 39 H 0.16 3.97 7.61 -2.91 -0.02 3.95 16 40 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 41 H 0.01 0.78 8.09 -2.38 -0.02 0.76 16 42 H 0.01 0.67 8.09 -2.39 -0.02 0.65 16 43 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 44 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 45 H 0.15 4.20 7.62 -2.91 -0.02 4.18 16 Total: -1.00 -73.11 389.27 -1.36 -74.47 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -0.37 Total: 18.94 kcal Atomic # 6 Polarization: -64.30 SS G_CDS: 4.00 Total: -60.30 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -0.66 Total: -76.27 kcal Atomic # 8 Polarization: -69.47 SS G_CDS: -6.02 Total: -75.50 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 73.16 SS G_CDS: -0.32 Total: 72.83 kcal Total: -73.11 -1.36 -74.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885086902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.152 kcal (2) G-P(sol) polarization free energy of solvation -73.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds