Wall clock time and date at job start Sat Apr 11 2020 05:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 112.84880 * 2 1 4 4 C 1.53782 * 113.61446 * 131.20041 * 2 1 3 5 5 H 1.08996 * 113.68722 * 203.67510 * 4 2 1 6 6 O 1.42901 * 113.61110 * 334.56600 * 4 2 1 7 7 C 1.53781 * 87.08260 * 89.11378 * 4 2 1 8 8 C 1.53786 * 87.17350 * 25.39213 * 7 4 2 9 9 H 1.09000 * 113.61138 * 220.06261 * 8 7 4 10 10 N 1.46496 * 113.61518 * 89.15486 * 8 7 4 11 11 S 1.65602 * 119.99545 * 114.50763 * 10 8 7 12 12 O 1.42099 * 106.40305 * 178.54269 * 11 10 8 13 13 O 1.42107 * 106.40104 * 311.45787 * 11 10 8 14 14 C 1.76196 * 107.21936 * 64.99880 * 11 10 8 15 15 C 1.38235 * 120.00256 * 269.72248 * 14 11 10 16 16 C 1.38237 * 120.00023 * 179.80882 * 15 14 11 17 17 C 1.38236 * 119.99850 * 0.42230 * 16 15 14 18 18 C 1.50698 * 119.99621 * 179.78320 * 17 16 15 19 19 C 1.50692 * 109.47742 * 270.02559 * 18 17 16 20 20 H 1.08002 * 119.99832 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00360 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99484 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99998 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47199 * 89.99873 * 23 21 19 25 25 H 1.48497 * 109.46830 * 209.99698 * 23 21 19 26 26 H 1.48496 * 109.47430 * 329.99543 * 23 21 19 27 27 C 1.38237 * 120.00055 * 359.81614 * 17 16 15 28 28 C 1.38234 * 119.99979 * 359.97438 * 27 17 16 29 29 H 1.08996 * 109.47267 * 308.30704 * 1 2 3 30 30 H 1.09002 * 109.47394 * 68.30465 * 1 2 3 31 31 H 1.09003 * 109.47316 * 188.30567 * 1 2 3 32 32 H 1.09004 * 109.46667 * 171.69275 * 3 2 1 33 33 H 1.08995 * 109.47416 * 291.69066 * 3 2 1 34 34 H 1.08999 * 109.47065 * 51.69444 * 3 2 1 35 35 H 0.96701 * 113.99233 * 177.00694 * 6 4 2 36 36 H 1.09002 * 113.61445 * 139.98212 * 7 4 2 37 37 H 1.09002 * 113.61408 * 270.79943 * 7 4 2 38 38 H 0.96993 * 120.00125 * 294.50679 * 10 8 7 39 39 H 1.07999 * 119.99685 * 0.02562 * 15 14 11 40 40 H 1.08001 * 119.99734 * 180.21015 * 16 15 14 41 41 H 1.09002 * 109.47143 * 30.03316 * 18 17 16 42 42 H 1.09002 * 109.46573 * 150.02394 * 18 17 16 43 43 H 0.97008 * 119.99700 * 180.02562 * 22 21 19 44 44 H 1.08001 * 119.99589 * 179.97438 * 27 17 16 45 45 H 1.08002 * 119.99718 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9281 1.0602 5 1 3.1590 -0.6496 1.3505 6 8 1.2918 -1.1625 2.1816 7 6 2.0929 -2.0426 0.0019 8 6 2.1448 -0.9317 -1.0603 9 1 1.4923 -1.1134 -1.9143 10 7 3.5059 -0.5574 -1.4520 11 16 4.0316 -0.8445 -2.9959 12 8 5.3598 -0.3444 -3.0670 13 8 3.6918 -2.1923 -3.2914 14 6 3.0634 0.1601 -4.0719 15 6 1.8876 -0.3329 -4.6060 16 6 1.1259 0.4567 -5.4471 17 6 1.5445 1.7362 -5.7609 18 6 0.7167 2.5952 -6.6816 19 6 1.1557 2.3731 -8.1060 20 1 1.9541 1.6789 -8.3229 21 6 0.5381 3.0560 -9.1323 22 7 -0.4345 3.9010 -8.8681 23 14 1.0818 2.7800 -10.8979 24 1 0.2913 1.6722 -11.4919 25 1 0.8623 4.0211 -11.6831 26 1 2.5241 2.4274 -10.9224 27 6 2.7229 2.2275 -5.2307 28 6 3.4823 1.4394 -4.3862 29 1 -0.3633 0.6370 0.8064 30 1 -0.3634 0.3799 -0.9549 31 1 -0.3634 -1.0169 0.1485 32 1 3.2023 1.3498 0.1485 33 1 1.9152 1.8923 -0.9548 34 1 1.6781 1.9921 0.8064 35 1 1.6548 -1.7814 2.8298 36 1 2.9716 -2.6875 0.0025 37 1 1.1573 -2.6019 0.0034 38 1 4.0991 -0.1415 -0.8071 39 1 1.5622 -1.3338 -4.3635 40 1 0.2056 0.0727 -5.8617 41 1 -0.3352 2.3282 -6.5797 42 1 0.8522 3.6445 -6.4191 43 1 -0.8692 4.3812 -9.5901 44 1 3.0501 3.2270 -5.4762 45 1 4.4031 1.8231 -3.9723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885120345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:34 Heat of formation + Delta-G solvation = -91.206095 kcal Electronic energy + Delta-G solvation = -27733.028548 eV Core-core repulsion = 23842.623889 eV Total energy + Delta-G solvation = -3890.404659 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.62680 -38.82887 -37.17236 -35.93826 -35.80635 -33.70088 -33.08187 -31.58272 -30.61127 -30.52249 -27.57254 -27.44740 -24.54459 -23.74538 -22.84750 -22.36698 -20.93390 -19.60131 -19.06311 -18.08879 -17.50567 -17.14986 -16.46161 -16.22622 -15.39488 -15.29568 -15.14624 -14.71642 -14.40196 -14.36422 -13.98637 -13.88418 -13.53361 -13.14304 -12.87750 -12.70628 -12.45446 -12.32814 -12.29119 -12.20940 -12.09022 -11.97810 -11.88697 -11.72776 -11.50587 -11.46778 -11.23326 -10.95652 -10.92630 -10.53195 -10.50708 -10.42508 -9.98356 -9.79092 -9.70631 -9.54780 -8.61584 -8.55327 -8.40998 -6.18644 -4.23704 0.44398 1.29737 1.76832 2.96523 3.23333 3.29985 3.34262 3.69213 3.82282 4.02309 4.09440 4.27578 4.34423 4.36993 4.47136 4.61292 4.85805 4.95981 5.14186 5.14598 5.20155 5.20986 5.32034 5.40301 5.54024 5.60357 5.66880 5.69925 5.76772 5.78929 5.81970 5.88718 5.92498 6.08930 6.21822 6.22931 6.30096 6.47745 6.73197 6.81453 6.88691 7.27168 7.33163 7.40806 7.56977 7.76428 8.11566 8.81079 9.41388 10.91373 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017297 B = 0.002927 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.349367 B = 9564.640926 C =10413.428435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.076 4.076 3 C -0.138 4.138 4 C 0.083 3.917 5 H 0.080 0.920 6 O -0.555 6.555 7 C -0.181 4.181 8 C 0.138 3.862 9 H 0.109 0.891 10 N -1.101 6.101 11 S 2.697 3.303 12 O -0.965 6.965 13 O -0.961 6.961 14 C -0.703 4.703 15 C -0.026 4.026 16 C -0.144 4.144 17 C 0.028 3.972 18 C 0.039 3.961 19 C -0.518 4.518 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.891 5.891 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.272 1.272 27 C -0.145 4.145 28 C -0.021 4.021 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.375 0.625 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.415 0.585 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.264 0.736 44 H 0.128 0.872 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.402 -8.674 21.546 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.078 4.078 3 C -0.196 4.196 4 C 0.024 3.976 5 H 0.098 0.902 6 O -0.360 6.360 7 C -0.220 4.220 8 C 0.030 3.970 9 H 0.127 0.873 10 N -0.857 5.857 11 S 2.790 3.210 12 O -0.956 6.956 13 O -0.951 6.951 14 C -0.792 4.792 15 C -0.045 4.045 16 C -0.163 4.163 17 C 0.027 3.973 18 C 0.003 3.997 19 C -0.556 4.556 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.529 5.529 23 Si 0.726 3.274 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.164 4.164 28 C -0.040 4.040 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.222 0.778 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.250 0.750 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.146 0.854 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.470 -8.795 20.764 22.989 hybrid contribution 0.376 0.253 -0.731 0.860 sum 4.846 -8.542 20.033 22.311 Atomic orbital electron populations 1.21421 0.91502 1.02737 1.02127 1.22390 0.97269 0.94812 0.93346 1.21706 1.00187 0.94875 1.02801 1.23549 0.93235 0.95923 0.84859 0.90224 1.86530 1.46864 1.67981 1.34618 1.24127 1.03836 0.97555 0.96528 1.21567 0.82480 0.95371 0.97606 0.87314 1.55457 1.21875 1.78252 1.30136 1.01630 0.73176 0.73986 0.72227 1.93572 1.34473 1.81575 1.85932 1.93572 1.84619 1.33297 1.83629 1.30263 1.14060 1.11457 1.23462 1.20780 0.91530 0.98354 0.93842 1.21242 1.01091 0.94574 0.99428 1.21118 0.93089 0.94019 0.89026 1.18537 0.94515 0.94194 0.92493 1.20967 1.19428 1.25329 0.89879 0.92295 1.25002 0.94825 0.94827 0.99467 1.69948 1.23551 1.26682 1.32761 0.86478 0.79231 0.77737 0.83967 1.20436 1.21021 1.19696 1.21245 0.95594 1.00791 0.98761 1.20755 0.97435 0.91298 0.94540 0.91746 0.92005 0.91850 0.92567 0.91392 0.92108 0.77783 0.90320 0.88100 0.74997 0.85318 0.85338 0.94711 0.94722 0.92617 0.85360 0.85298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 8.41 37.16 0.31 -0.74 16 2 C -0.08 -0.65 1.34 -153.60 -0.21 -0.85 16 3 C -0.14 -1.15 8.65 37.16 0.32 -0.83 16 4 C 0.08 0.61 4.48 -25.92 -0.12 0.50 16 5 H 0.08 0.49 8.01 -51.93 -0.42 0.08 16 6 O -0.55 -4.14 12.82 -35.23 -0.45 -4.60 16 7 C -0.18 -1.42 7.35 -25.92 -0.19 -1.61 16 8 C 0.14 1.26 3.89 -67.02 -0.26 1.00 16 9 H 0.11 1.02 7.71 -51.93 -0.40 0.62 16 10 N -1.10 -10.40 5.14 -4.12 -0.02 -10.42 16 11 S 2.70 35.87 5.69 -107.50 -0.61 35.26 16 12 O -0.97 -15.06 17.28 -57.17 -0.99 -16.05 16 13 O -0.96 -15.03 17.04 -57.17 -0.97 -16.00 16 14 C -0.70 -10.66 5.95 -39.58 -0.24 -10.89 16 15 C -0.03 -0.40 9.22 -39.58 -0.36 -0.77 16 16 C -0.14 -2.60 9.70 -39.58 -0.38 -2.99 16 17 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 18 C 0.04 0.95 5.10 -29.04 -0.15 0.80 16 19 C -0.52 -13.95 9.09 -34.44 -0.31 -14.26 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -25.38 13.29 55.43 0.74 -24.65 16 23 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 C -0.14 -2.64 9.70 -39.58 -0.38 -3.02 16 28 C -0.02 -0.33 9.52 -39.58 -0.38 -0.71 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.54 7.25 -51.93 -0.38 0.16 16 32 H 0.06 0.39 6.71 -51.93 -0.35 0.05 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.38 1.31 9.12 45.56 0.42 1.73 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.76 7.63 -51.93 -0.40 0.36 16 38 H 0.42 3.03 7.50 -34.47 -0.26 2.77 16 39 H 0.13 1.72 7.61 -52.49 -0.40 1.32 16 40 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 41 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 42 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 45 H 0.13 1.76 7.62 -52.49 -0.40 1.36 16 LS Contribution 383.24 15.07 5.78 5.78 Total: -1.00 -33.49 383.24 -10.45 -43.94 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.92 Total: 3.48 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: -2.97 Total: -32.77 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.72 Total: -35.07 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -2.41 Total: -36.65 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 35.87 SS G_CDS: -0.61 Total: 35.26 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.49 -10.45 -43.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885120345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.265 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds