Wall clock time and date at job start Sat Apr 11 2020 05:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.46929 * 2 1 4 4 N 1.46504 * 110.46071 * 53.78468 * 3 2 1 5 5 S 1.65599 * 119.99407 * 55.84819 * 4 3 2 6 6 O 1.42103 * 106.40288 * 175.98929 * 5 4 3 7 7 O 1.42103 * 106.40489 * 308.91120 * 5 4 3 8 8 C 1.76197 * 107.22016 * 62.45041 * 5 4 3 9 9 C 1.38240 * 120.00248 * 264.06825 * 8 5 4 10 10 C 1.38232 * 120.00292 * 179.76565 * 9 8 5 11 11 C 1.38243 * 119.99767 * 0.47971 * 10 9 8 12 12 C 1.50701 * 119.99844 * 179.76853 * 11 10 9 13 13 C 1.50695 * 109.47268 * 270.02555 * 12 11 10 14 14 H 1.08003 * 119.99921 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00389 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99717 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47149 * 60.00220 * 17 15 13 19 19 H 1.48501 * 109.47639 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47418 * 300.00432 * 17 15 13 21 21 C 1.38233 * 120.00093 * 359.79453 * 11 10 9 22 22 C 1.38236 * 120.00029 * 359.95291 * 21 11 10 23 23 C 1.54508 * 110.51174 * 176.39256 * 3 2 1 24 24 C 1.54489 * 104.06382 * 118.78101 * 23 3 2 25 25 O 1.44421 * 104.79937 * 23.98074 * 24 23 3 26 26 C 1.44428 * 105.27890 * 319.48489 * 25 24 23 27 27 H 1.09002 * 109.47068 * 305.15486 * 1 2 3 28 28 H 1.09000 * 109.47315 * 65.15926 * 1 2 3 29 29 H 1.09007 * 109.46956 * 185.16348 * 1 2 3 30 30 H 1.09003 * 109.46768 * 239.99847 * 2 1 3 31 31 H 1.09001 * 109.46771 * 120.00045 * 2 1 3 32 32 H 0.96998 * 120.00204 * 235.85074 * 4 3 2 33 33 H 1.08000 * 119.99666 * 359.97438 * 9 8 5 34 34 H 1.07997 * 120.00181 * 180.25230 * 10 9 8 35 35 H 1.09005 * 109.47056 * 30.02475 * 12 11 10 36 36 H 1.08998 * 109.46741 * 150.02376 * 12 11 10 37 37 H 0.97003 * 120.00093 * 180.02562 * 16 15 13 38 38 H 1.07997 * 120.00280 * 179.97438 * 21 11 10 39 39 H 1.07995 * 120.00179 * 179.97438 * 22 21 11 40 40 H 1.09000 * 110.51362 * 237.42505 * 23 3 2 41 41 H 1.09002 * 110.51052 * 0.13854 * 23 3 2 42 42 H 1.08997 * 110.36877 * 142.81263 * 24 23 3 43 43 H 1.09002 * 110.36611 * 265.14911 * 24 23 3 44 44 H 1.08999 * 110.37321 * 281.68663 * 26 25 24 45 45 H 1.09002 * 110.46652 * 159.39331 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4461 2.1956 1.1074 5 16 1.6051 1.6462 2.6615 6 8 1.0125 2.6305 3.4977 7 8 1.1939 0.2860 2.6504 8 6 3.3260 1.6426 3.0400 9 6 4.0625 0.4814 2.8981 10 6 5.4136 0.4797 3.1903 11 6 6.0261 1.6369 3.6340 12 6 7.4980 1.6337 3.9577 13 6 7.6927 1.2740 5.4080 14 1 6.8362 1.0685 6.0331 15 6 8.9641 1.2070 5.9371 16 7 10.0070 1.4577 5.1761 17 14 9.2055 0.7618 7.7351 18 1 8.6389 -0.5868 7.9914 19 1 10.6558 0.7586 8.0540 20 1 8.5135 1.7600 8.5895 21 6 5.2885 2.7966 3.7813 22 6 3.9385 2.7996 3.4841 23 6 3.5821 1.4715 0.0911 24 6 4.0221 2.1723 -1.2136 25 8 2.8805 2.9627 -1.6108 26 6 1.7306 2.1291 -1.3488 27 1 -0.3633 0.5917 0.8402 28 1 -0.3634 0.4317 -0.9326 29 1 -0.3633 -1.0236 0.0925 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 0.9597 3.0159 0.9303 33 1 3.5830 -0.4237 2.5556 34 1 5.9898 -0.4265 3.0756 35 1 8.0064 0.9015 3.3303 36 1 7.9133 2.6239 3.7700 37 1 10.9016 1.4102 5.5481 38 1 5.7670 3.7005 4.1284 39 1 3.3621 3.7055 3.5996 40 1 3.9027 2.0462 0.9600 41 1 3.9814 0.4581 0.1336 42 1 4.8825 2.8150 -1.0275 43 1 4.2576 1.4338 -1.9800 44 1 1.6148 1.3841 -2.1361 45 1 0.8297 2.7372 -1.2673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885136537.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:56 Heat of formation + Delta-G solvation = -100.240053 kcal Electronic energy + Delta-G solvation = -28577.814100 eV Core-core repulsion = 24687.017699 eV Total energy + Delta-G solvation = -3890.796401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.28337 -38.88414 -37.26982 -35.99855 -35.69359 -33.74808 -31.89812 -31.68711 -30.79564 -30.49322 -28.12915 -27.47042 -24.28040 -23.74856 -22.53543 -22.31046 -20.97533 -20.76502 -19.15958 -17.82110 -17.56410 -16.86293 -16.47570 -15.96999 -15.89350 -15.44211 -15.18153 -14.68816 -14.46737 -14.42628 -14.27784 -13.83052 -13.68177 -13.16507 -13.10740 -12.95915 -12.58805 -12.31294 -12.23037 -12.04655 -11.93885 -11.87310 -11.77392 -11.51782 -11.48463 -11.36849 -11.10948 -10.95338 -10.93065 -10.57086 -10.53666 -10.50513 -10.01253 -9.81647 -9.73135 -9.59516 -8.63017 -8.56021 -8.39568 -6.19556 -4.24805 0.47570 1.27469 1.74530 2.97098 3.24311 3.28722 3.32015 3.60369 3.75244 4.05553 4.15274 4.34816 4.43877 4.48067 4.56201 4.83648 4.91365 4.96937 5.12086 5.15081 5.17528 5.19679 5.23098 5.35524 5.47146 5.53533 5.59123 5.67388 5.75491 5.82808 5.85466 5.86782 5.93734 6.07616 6.19233 6.20063 6.28476 6.46288 6.50564 6.78636 6.80509 6.87096 7.25092 7.38506 7.55315 7.75206 8.10307 8.79712 9.40343 10.90383 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017595 B = 0.003290 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.011093 B = 8509.253952 C = 9228.309357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.143 4.143 3 C 0.152 3.848 4 N -1.105 6.105 5 S 2.695 3.305 6 O -0.968 6.968 7 O -0.957 6.957 8 C -0.703 4.703 9 C -0.023 4.023 10 C -0.145 4.145 11 C 0.028 3.972 12 C 0.040 3.960 13 C -0.519 4.519 14 H 0.058 0.942 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.899 3.101 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.145 4.145 22 C -0.022 4.022 23 C -0.189 4.189 24 C 0.049 3.951 25 O -0.372 6.372 26 C 0.053 3.947 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.417 0.583 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.035 0.965 36 H 0.034 0.966 37 H 0.265 0.735 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.190 -0.339 -14.547 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.182 4.182 3 C 0.063 3.937 4 N -0.863 5.863 5 S 2.788 3.212 6 O -0.958 6.958 7 O -0.947 6.947 8 C -0.792 4.792 9 C -0.042 4.042 10 C -0.164 4.164 11 C 0.028 3.972 12 C 0.003 3.997 13 C -0.557 4.557 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.529 5.529 17 Si 0.726 3.274 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.163 4.163 22 C -0.042 4.042 23 C -0.228 4.228 24 C -0.027 4.027 25 O -0.290 6.290 26 C -0.025 4.025 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.252 0.748 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.594 -0.522 -14.050 21.749 hybrid contribution 0.911 0.054 1.001 1.355 sum -15.683 -0.468 -13.048 20.407 Atomic orbital electron populations 1.21652 0.94851 1.02190 1.01128 1.22252 0.97654 0.93666 1.04592 1.21542 0.92240 0.92230 0.87699 1.55617 1.69455 1.38009 1.23194 1.01659 0.74168 0.73624 0.71728 1.93575 1.76212 1.61315 1.64694 1.93554 1.80685 1.34658 1.85840 1.30268 1.25205 1.01454 1.22311 1.20777 0.94170 0.95376 0.93901 1.21233 0.94193 0.98946 1.02025 1.21114 0.99270 0.91550 0.85304 1.18531 0.84705 0.98971 0.97491 1.20927 0.92505 1.48321 0.93948 0.92350 1.24995 0.95854 0.94948 0.98269 1.69935 0.98495 1.48490 1.36028 0.86541 0.77096 0.79241 0.84521 1.20031 1.21094 1.20034 1.21239 0.93476 0.99340 1.02294 1.20737 0.95117 0.95602 0.92704 1.23956 0.94266 1.03516 1.01038 1.23406 0.90056 0.94866 0.94411 1.89153 1.15215 1.38883 1.85763 1.23658 0.90571 0.94435 0.93875 0.92548 0.93341 0.92307 0.90528 0.88442 0.74777 0.85188 0.85375 0.94722 0.94745 0.92552 0.85379 0.85499 0.88088 0.88963 0.88612 0.91978 0.90797 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.11 37.16 0.34 -0.88 16 2 C -0.14 -1.26 4.11 -26.73 -0.11 -1.37 16 3 C 0.15 1.38 0.80 -130.25 -0.10 1.27 16 4 N -1.10 -10.83 4.54 1.80 0.01 -10.82 16 5 S 2.70 35.73 5.51 -107.50 -0.59 35.14 16 6 O -0.97 -15.61 17.44 -57.17 -1.00 -16.60 16 7 O -0.96 -13.78 12.72 -57.17 -0.73 -14.51 16 8 C -0.70 -10.40 3.51 -39.58 -0.14 -10.54 16 9 C -0.02 -0.34 7.75 -39.58 -0.31 -0.65 16 10 C -0.15 -2.51 9.70 -39.58 -0.38 -2.90 16 11 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 12 C 0.04 0.95 5.10 -29.04 -0.15 0.80 16 13 C -0.52 -13.86 9.09 -34.44 -0.31 -14.17 16 14 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 17 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 C -0.14 -2.59 9.70 -39.58 -0.38 -2.97 16 22 C -0.02 -0.35 9.26 -39.58 -0.37 -0.71 16 23 C -0.19 -1.87 4.83 -25.16 -0.12 -1.99 16 24 C 0.05 0.46 7.63 37.94 0.29 0.75 16 25 O -0.37 -3.90 11.65 -35.23 -0.41 -4.31 16 26 C 0.05 0.42 6.19 37.94 0.23 0.66 16 27 H 0.06 0.55 6.28 -51.93 -0.33 0.22 16 28 H 0.05 0.33 7.74 -51.93 -0.40 -0.08 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.53 8.01 -51.93 -0.42 0.12 16 31 H 0.10 1.01 5.96 -51.93 -0.31 0.70 16 32 H 0.42 3.30 8.44 -34.47 -0.29 3.01 16 33 H 0.13 1.65 7.40 -52.49 -0.39 1.27 16 34 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 35 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 36 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 39 H 0.13 1.75 7.75 -52.49 -0.41 1.35 16 40 H 0.10 1.17 4.89 -51.93 -0.25 0.91 16 41 H 0.09 0.83 7.50 -51.93 -0.39 0.44 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.48 7.78 -51.93 -0.40 0.08 16 45 H 0.10 0.65 7.80 -51.93 -0.41 0.24 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -32.02 365.64 -10.12 -42.14 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.49 Total: 3.14 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: -2.14 Total: -31.10 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.74 Total: -35.31 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -2.13 Total: -35.42 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 35.73 SS G_CDS: -0.59 Total: 35.14 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.02 -10.12 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885136537.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.099 kcal (2) G-P(sol) polarization free energy of solvation -32.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds