Wall clock time and date at job start Sat Apr 11 2020 05:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.46929 * 2 1 4 4 N 1.46504 * 110.46071 * 53.78468 * 3 2 1 5 5 S 1.65599 * 119.99407 * 55.84819 * 4 3 2 6 6 O 1.42103 * 106.40288 * 175.98929 * 5 4 3 7 7 O 1.42103 * 106.40489 * 308.91120 * 5 4 3 8 8 C 1.76197 * 107.22016 * 62.45041 * 5 4 3 9 9 C 1.38240 * 120.00248 * 264.06825 * 8 5 4 10 10 C 1.38232 * 120.00292 * 179.76565 * 9 8 5 11 11 C 1.38243 * 119.99767 * 0.47971 * 10 9 8 12 12 C 1.50701 * 119.99844 * 179.76853 * 11 10 9 13 13 C 1.50695 * 109.47268 * 270.02555 * 12 11 10 14 14 H 1.08003 * 119.99921 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00389 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99717 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47149 * 60.00220 * 17 15 13 19 19 H 1.48501 * 109.47639 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47418 * 300.00432 * 17 15 13 21 21 C 1.38233 * 120.00093 * 359.79453 * 11 10 9 22 22 C 1.38236 * 120.00029 * 359.95291 * 21 11 10 23 23 C 1.54508 * 110.51174 * 176.39256 * 3 2 1 24 24 C 1.54489 * 104.06382 * 118.78101 * 23 3 2 25 25 O 1.44421 * 104.79937 * 23.98074 * 24 23 3 26 26 C 1.44428 * 105.27890 * 319.48489 * 25 24 23 27 27 H 1.09002 * 109.47068 * 305.15486 * 1 2 3 28 28 H 1.09000 * 109.47315 * 65.15926 * 1 2 3 29 29 H 1.09007 * 109.46956 * 185.16348 * 1 2 3 30 30 H 1.09003 * 109.46768 * 239.99847 * 2 1 3 31 31 H 1.09001 * 109.46771 * 120.00045 * 2 1 3 32 32 H 0.96998 * 120.00204 * 235.85074 * 4 3 2 33 33 H 1.08000 * 119.99666 * 359.97438 * 9 8 5 34 34 H 1.07997 * 120.00181 * 180.25230 * 10 9 8 35 35 H 1.09005 * 109.47056 * 30.02475 * 12 11 10 36 36 H 1.08998 * 109.46741 * 150.02376 * 12 11 10 37 37 H 0.97003 * 120.00093 * 180.02562 * 16 15 13 38 38 H 1.07997 * 120.00280 * 179.97438 * 21 11 10 39 39 H 1.07995 * 120.00179 * 179.97438 * 22 21 11 40 40 H 1.09000 * 110.51362 * 237.42505 * 23 3 2 41 41 H 1.09002 * 110.51052 * 0.13854 * 23 3 2 42 42 H 1.08997 * 110.36877 * 142.81263 * 24 23 3 43 43 H 1.09002 * 110.36611 * 265.14911 * 24 23 3 44 44 H 1.08999 * 110.37321 * 281.68663 * 26 25 24 45 45 H 1.09002 * 110.46652 * 159.39331 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4461 2.1956 1.1074 5 16 1.6051 1.6462 2.6615 6 8 1.0125 2.6305 3.4977 7 8 1.1939 0.2860 2.6504 8 6 3.3260 1.6426 3.0400 9 6 4.0625 0.4814 2.8981 10 6 5.4136 0.4797 3.1903 11 6 6.0261 1.6369 3.6340 12 6 7.4980 1.6337 3.9577 13 6 7.6927 1.2740 5.4080 14 1 6.8362 1.0685 6.0331 15 6 8.9641 1.2070 5.9371 16 7 10.0070 1.4577 5.1761 17 14 9.2055 0.7618 7.7351 18 1 8.6389 -0.5868 7.9914 19 1 10.6558 0.7586 8.0540 20 1 8.5135 1.7600 8.5895 21 6 5.2885 2.7966 3.7813 22 6 3.9385 2.7996 3.4841 23 6 3.5821 1.4715 0.0911 24 6 4.0221 2.1723 -1.2136 25 8 2.8805 2.9627 -1.6108 26 6 1.7306 2.1291 -1.3488 27 1 -0.3633 0.5917 0.8402 28 1 -0.3634 0.4317 -0.9326 29 1 -0.3633 -1.0236 0.0925 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 0.9597 3.0159 0.9303 33 1 3.5830 -0.4237 2.5556 34 1 5.9898 -0.4265 3.0756 35 1 8.0064 0.9015 3.3303 36 1 7.9133 2.6239 3.7700 37 1 10.9016 1.4102 5.5481 38 1 5.7670 3.7005 4.1284 39 1 3.3621 3.7055 3.5996 40 1 3.9027 2.0462 0.9600 41 1 3.9814 0.4581 0.1336 42 1 4.8825 2.8150 -1.0275 43 1 4.2576 1.4338 -1.9800 44 1 1.6148 1.3841 -2.1361 45 1 0.8297 2.7372 -1.2673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885136537.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:56 Heat of formation + Delta-G solvation = -121.759382 kcal Electronic energy + Delta-G solvation = -28578.747248 eV Core-core repulsion = 24687.017699 eV Total energy + Delta-G solvation = -3891.729549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.03645 -40.22156 -38.39240 -37.02829 -36.61013 -35.61575 -33.39054 -32.64090 -32.00104 -31.40734 -29.23601 -28.79495 -25.60877 -24.91612 -23.72351 -23.16717 -22.46531 -21.60296 -20.19708 -18.92022 -18.61519 -18.51110 -17.69903 -16.87566 -16.80995 -16.58880 -16.52266 -16.00625 -15.75472 -15.53783 -15.19133 -14.91403 -14.63249 -14.50109 -14.38678 -14.06760 -13.68967 -13.59190 -13.40561 -13.32453 -13.19157 -13.01027 -12.89336 -12.71076 -12.65869 -12.60885 -12.32346 -12.15607 -12.03734 -11.96168 -11.86281 -11.65698 -11.41042 -11.24639 -10.72362 -10.65067 -10.50529 -9.94306 -9.87888 -8.27166 -6.39835 -0.61794 -0.05975 0.40850 1.38390 1.39603 1.48082 1.96352 2.34303 2.55224 2.80150 2.99678 3.05594 3.31816 3.49181 3.75374 3.84579 3.89088 3.96713 4.07641 4.16372 4.22716 4.33003 4.48340 4.49365 4.54047 4.58323 4.76293 4.78977 4.81565 4.87866 4.90578 4.92745 5.10315 5.11935 5.16249 5.22702 5.25570 5.26671 5.34250 5.41673 5.54729 5.67049 5.83945 5.87631 5.92473 6.07540 6.10033 6.71959 7.29280 8.82569 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017595 B = 0.003290 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.011093 B = 8509.253952 C = 9228.309357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.145 4.145 3 C 0.152 3.848 4 N -1.091 6.091 5 S 2.719 3.281 6 O -0.993 6.993 7 O -0.964 6.964 8 C -0.697 4.697 9 C -0.012 4.012 10 C -0.150 4.150 11 C 0.000 4.000 12 C 0.049 3.951 13 C -0.535 4.535 14 H 0.053 0.947 15 C 0.011 3.989 16 N -0.925 5.925 17 Si 0.962 3.038 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.270 1.270 21 C -0.154 4.154 22 C -0.021 4.021 23 C -0.195 4.195 24 C 0.049 3.951 25 O -0.391 6.391 26 C 0.053 3.947 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.428 0.572 33 H 0.158 0.842 34 H 0.131 0.869 35 H 0.015 0.985 36 H 0.011 0.989 37 H 0.267 0.733 38 H 0.125 0.875 39 H 0.147 0.853 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.393 -1.048 -15.464 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.184 4.184 3 C 0.063 3.937 4 N -0.853 5.853 5 S 2.809 3.191 6 O -0.984 6.984 7 O -0.954 6.954 8 C -0.784 4.784 9 C -0.031 4.031 10 C -0.169 4.169 11 C -0.001 4.001 12 C 0.012 3.988 13 C -0.573 4.573 14 H 0.072 0.928 15 C -0.188 4.188 16 N -0.564 5.564 17 Si 0.786 3.214 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.195 1.195 21 C -0.173 4.173 22 C -0.040 4.040 23 C -0.234 4.234 24 C -0.028 4.028 25 O -0.310 6.310 26 C -0.025 4.025 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.266 0.734 33 H 0.175 0.825 34 H 0.149 0.851 35 H 0.033 0.967 36 H 0.029 0.971 37 H 0.076 0.924 38 H 0.143 0.857 39 H 0.165 0.835 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.114 0.886 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -18.788 -1.225 -14.960 24.048 hybrid contribution 1.487 0.282 1.166 1.910 sum -17.302 -0.943 -13.793 22.147 Atomic orbital electron populations 1.21702 0.94676 1.02139 1.01752 1.22286 0.97836 0.93215 1.05022 1.21668 0.91545 0.92603 0.87841 1.55330 1.69224 1.38682 1.22030 1.00997 0.72909 0.73062 0.72111 1.93542 1.76342 1.62091 1.66396 1.93554 1.80296 1.35218 1.86323 1.30704 1.26352 1.00920 1.20437 1.20994 0.93035 0.96456 0.92611 1.21267 0.95359 0.98167 1.02062 1.20773 0.97196 0.93528 0.88557 1.18249 0.87719 0.96780 0.96055 1.21271 0.92515 1.48038 0.95448 0.92827 1.25838 0.95607 0.94835 1.02539 1.70045 0.98915 1.49552 1.37896 0.85546 0.77257 0.79162 0.79400 1.19292 1.20429 1.19520 1.21242 0.94519 0.98698 1.02857 1.20922 0.94206 0.96861 0.92011 1.23982 0.95052 1.03723 1.00607 1.23447 0.89692 0.95007 0.94663 1.89137 1.16094 1.39941 1.85877 1.23838 0.90282 0.94940 0.93466 0.93906 0.91148 0.92409 0.88217 0.90004 0.73406 0.82495 0.85139 0.96672 0.97081 0.92391 0.85708 0.83505 0.90044 0.88124 0.89478 0.90085 0.88579 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.11 71.98 0.66 -1.42 16 2 C -0.14 -2.10 4.11 30.59 0.13 -1.97 16 3 C 0.15 2.33 0.80 4.62 0.00 2.33 16 4 N -1.09 -18.75 4.54 -148.21 -0.67 -19.42 16 5 S 2.72 66.76 5.51 -56.49 -0.31 66.45 16 6 O -0.99 -30.31 17.44 -128.00 -2.23 -32.54 16 7 O -0.96 -25.62 12.72 -128.00 -1.63 -27.24 16 8 C -0.70 -19.70 3.51 22.27 0.08 -19.62 16 9 C -0.01 -0.34 7.75 22.27 0.17 -0.17 16 10 C -0.15 -5.21 9.70 22.27 0.22 -5.00 16 11 C 0.00 -0.01 5.07 -19.86 -0.10 -0.11 16 12 C 0.05 2.46 5.10 29.10 0.15 2.61 16 13 C -0.53 -29.46 9.09 25.60 0.23 -29.22 16 14 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 15 C 0.01 0.61 5.46 84.65 0.46 1.07 16 16 N -0.92 -53.79 13.29 21.45 0.28 -53.51 16 17 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 C -0.15 -5.65 9.70 22.27 0.22 -5.43 16 22 C -0.02 -0.64 9.26 22.27 0.21 -0.44 16 23 C -0.19 -3.48 4.83 31.61 0.15 -3.33 16 24 C 0.05 0.82 7.63 72.49 0.55 1.38 16 25 O -0.39 -7.29 11.65 -148.98 -1.74 -9.03 16 26 C 0.05 0.66 6.19 72.49 0.45 1.11 16 27 H 0.04 0.72 6.28 -2.39 -0.01 0.71 16 28 H 0.07 0.68 7.74 -2.39 -0.02 0.66 16 29 H 0.06 0.83 8.14 -2.38 -0.02 0.82 16 30 H 0.10 0.99 8.01 -2.39 -0.02 0.97 16 31 H 0.08 1.47 5.96 -2.39 -0.01 1.46 16 32 H 0.43 5.66 8.44 -96.75 -0.82 4.84 16 33 H 0.16 3.63 7.40 -2.91 -0.02 3.61 16 34 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 35 H 0.02 0.79 8.09 -2.38 -0.02 0.77 16 36 H 0.01 0.58 8.09 -2.39 -0.02 0.57 16 37 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 38 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 39 H 0.15 3.88 7.75 -2.91 -0.02 3.86 16 40 H 0.08 1.79 4.89 -2.39 -0.01 1.77 16 41 H 0.10 1.60 7.50 -2.39 -0.02 1.58 16 42 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.10 0.83 7.78 -2.39 -0.02 0.81 16 45 H 0.11 1.08 7.80 -2.39 -0.02 1.06 16 Total: -1.00 -69.58 365.64 -0.51 -70.09 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.19 Total: 18.09 kcal Atomic # 6 Polarization: -61.79 SS G_CDS: 3.57 Total: -58.22 kcal Atomic # 7 Polarization: -72.54 SS G_CDS: -0.39 Total: -72.93 kcal Atomic # 8 Polarization: -63.22 SS G_CDS: -5.60 Total: -68.82 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 66.76 SS G_CDS: -0.31 Total: 66.45 kcal Total: -69.58 -0.51 -70.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885136537.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.669 kcal (2) G-P(sol) polarization free energy of solvation -69.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds