Wall clock time and date at job start Sat Apr 11 2020 05:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00180 * 2 1 4 4 C 1.53002 * 109.47261 * 180.02562 * 3 2 1 5 5 C 1.52999 * 113.27895 * 313.06379 * 4 3 2 6 6 C 1.53501 * 114.20808 * 179.97438 * 4 3 2 7 7 N 1.47068 * 87.98347 * 220.14625 * 6 4 3 8 8 S 1.65603 * 136.05443 * 207.08094 * 7 6 4 9 9 O 1.42094 * 106.40226 * 336.46587 * 8 7 6 10 10 O 1.42101 * 106.40228 * 203.53890 * 8 7 6 11 11 C 1.76205 * 107.21426 * 90.00072 * 8 7 6 12 12 C 1.38228 * 120.00116 * 270.20933 * 11 8 7 13 13 C 1.38238 * 120.00114 * 180.26456 * 12 11 8 14 14 C 1.38234 * 119.99675 * 359.50218 * 13 12 11 15 15 C 1.50702 * 120.00257 * 180.25732 * 14 13 12 16 16 C 1.50701 * 109.46833 * 89.99861 * 15 14 13 17 17 H 1.08001 * 120.00342 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00009 * 179.97438 * 16 15 14 19 19 N 1.31507 * 119.99884 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00069 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46936 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47244 * 120.00518 * 20 18 16 23 23 H 1.48504 * 109.46784 * 240.00547 * 20 18 16 24 24 C 1.38235 * 120.00220 * 0.28720 * 14 13 12 25 25 C 1.38234 * 119.99800 * 89.99999 * 11 8 7 26 26 C 1.47064 * 87.88414 * 27.34225 * 7 6 4 27 27 H 1.09000 * 109.47171 * 60.00337 * 1 2 3 28 28 H 1.08998 * 109.47093 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46966 * 300.00266 * 1 2 3 30 30 H 1.09004 * 109.47421 * 59.99666 * 3 2 1 31 31 H 1.09007 * 109.47099 * 299.99658 * 3 2 1 32 32 H 1.08999 * 109.47316 * 286.93139 * 5 4 3 33 33 H 1.09002 * 109.47395 * 46.93494 * 5 4 3 34 34 H 1.09004 * 109.47150 * 166.93859 * 5 4 3 35 35 H 1.09002 * 113.46771 * 105.36537 * 6 4 3 36 36 H 1.09000 * 113.46358 * 334.92544 * 6 4 3 37 37 H 1.08004 * 120.00270 * 0.03858 * 12 11 8 38 38 H 1.08002 * 120.00519 * 179.78838 * 13 12 11 39 39 H 1.08993 * 109.47429 * 210.00613 * 15 14 13 40 40 H 1.08998 * 109.46961 * 330.00864 * 15 14 13 41 41 H 0.96998 * 119.99939 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.00471 * 179.97438 * 24 14 13 43 43 H 1.08001 * 120.00294 * 359.97438 * 25 11 8 44 44 H 1.08997 * 113.47220 * 87.44163 * 26 7 6 45 45 H 1.09008 * 113.46426 * 217.87603 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.0629 0.1800 1.0258 6 6 4.2735 2.5305 -0.0013 7 7 5.2333 1.9447 -0.9492 8 16 6.8232 2.1912 -1.3416 9 8 7.1287 3.5252 -0.9592 10 8 6.9896 1.7048 -2.6663 11 6 7.7853 1.1430 -0.3021 12 6 8.2257 1.6022 0.9250 13 6 8.9851 0.7817 1.7381 14 6 9.2954 -0.5015 1.3285 15 6 10.1184 -1.3980 2.2173 16 6 9.2051 -2.1796 3.1262 17 1 8.1357 -2.0413 3.0660 18 6 9.7347 -3.0720 4.0341 19 7 11.0369 -3.2408 4.1071 20 14 8.6026 -4.0413 5.1602 21 1 7.1918 -3.6708 4.8819 22 1 8.7902 -5.4946 4.9190 23 1 8.9260 -3.7286 6.5755 24 6 8.8514 -0.9623 0.1031 25 6 8.0961 -0.1401 -0.7120 26 6 4.1580 1.0484 -1.3999 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8901 32 1 3.9647 0.5985 2.0274 33 1 3.4872 -0.7432 0.9597 34 1 5.1126 -0.0310 0.8215 35 1 4.7149 2.7840 0.9625 36 1 3.6879 3.3464 -0.4250 37 1 7.9795 2.6033 1.2471 38 1 9.3321 1.1417 2.6955 39 1 10.6965 -2.0878 1.6025 40 1 10.7961 -0.7912 2.8178 41 1 11.4095 -3.8684 4.7460 42 1 9.0942 -1.9647 -0.2172 43 1 7.7488 -0.5003 -1.6692 44 1 3.5420 1.4735 -2.1923 45 1 4.5011 0.0391 -1.6276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885152406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:00 Heat of formation + Delta-G solvation = -64.594427 kcal Electronic energy + Delta-G solvation = -27535.713481 eV Core-core repulsion = 23646.462790 eV Total energy + Delta-G solvation = -3889.250690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.36458 -38.78989 -37.69015 -37.11858 -35.76829 -33.67855 -31.68401 -31.55454 -30.56615 -27.69026 -27.42738 -26.71150 -26.27426 -24.90499 -23.70587 -22.32920 -20.85428 -19.32517 -18.69978 -17.90903 -17.24152 -16.74508 -16.46203 -16.27464 -15.98842 -15.81315 -15.08292 -14.72147 -14.43356 -14.36670 -14.08860 -13.77478 -13.65089 -13.41138 -13.10295 -12.84176 -12.71036 -12.21425 -12.15374 -12.05451 -12.01530 -11.96199 -11.88082 -11.76814 -11.48935 -11.48164 -10.93608 -10.93524 -10.83785 -10.53248 -10.50254 -10.48613 -9.93675 -9.79286 -9.63526 -9.24055 -8.58482 -8.54504 -8.37028 -6.17707 -4.22762 0.40232 1.34891 1.80802 2.96908 3.21729 3.29811 3.34029 3.36951 3.80249 4.02175 4.10967 4.25125 4.35763 4.43094 4.68473 4.78268 5.00505 5.02159 5.12972 5.15578 5.18000 5.20751 5.23917 5.26006 5.27753 5.37350 5.42940 5.62406 5.72986 5.77740 5.83944 5.91326 5.92129 5.97401 6.25293 6.28915 6.34080 6.37607 6.53207 6.84721 6.84879 6.91514 7.30074 7.44101 7.59731 7.77216 8.12675 8.82100 9.42055 10.92459 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009684 B = 0.003694 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.777139 B = 7577.219914 C = 9818.728096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.078 3.922 4 C -0.096 4.096 5 C -0.124 4.124 6 C 0.140 3.860 7 N -1.044 6.044 8 S 2.721 3.279 9 O -0.962 6.962 10 O -0.961 6.961 11 C -0.701 4.701 12 C -0.022 4.022 13 C -0.145 4.145 14 C 0.028 3.972 15 C 0.038 3.962 16 C -0.516 4.516 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.145 4.145 25 C -0.022 4.022 26 C 0.139 3.861 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.264 0.736 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.084 0.916 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.876 10.025 -8.640 23.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.000 4.000 4 C -0.098 4.098 5 C -0.181 4.181 6 C 0.014 3.986 7 N -0.882 5.882 8 S 2.818 3.182 9 O -0.952 6.952 10 O -0.952 6.952 11 C -0.791 4.791 12 C -0.041 4.041 13 C -0.164 4.164 14 C 0.027 3.973 15 C 0.002 3.998 16 C -0.554 4.554 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.529 5.529 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.164 4.164 25 C -0.041 4.041 26 C 0.014 3.986 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.102 0.898 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.065 10.393 -9.271 22.810 hybrid contribution -0.504 -0.856 1.211 1.566 sum -18.569 9.537 -8.060 22.376 Atomic orbital electron populations 1.22738 0.81134 1.02825 0.99824 1.87919 1.19434 1.27487 1.95360 1.22403 0.92045 0.85038 1.00509 1.22454 0.92723 0.97306 0.97355 1.21449 1.01599 0.98285 0.96800 1.22514 0.88009 0.94923 0.93154 1.59978 1.23738 1.51159 1.53295 1.00831 0.70674 0.73418 0.73316 1.93543 1.82869 1.34504 1.84328 1.93547 1.84836 1.82148 1.34629 1.30329 1.23101 1.12028 1.13597 1.20745 0.93548 0.98580 0.91268 1.21231 1.00588 0.94402 1.00195 1.21105 0.90138 0.93352 0.92688 1.18547 0.94420 0.93437 0.93429 1.20992 0.93039 1.22730 1.18617 0.92233 1.25011 0.95167 0.96792 0.97222 1.69955 1.10645 1.36024 1.36298 0.86435 0.80901 0.79752 0.80380 1.19574 1.20806 1.20829 1.21235 1.00135 1.00122 0.94891 1.20757 0.94022 0.91224 0.98129 1.22651 0.85767 0.94533 0.95645 0.94174 0.89619 0.94137 0.92610 0.92785 0.92043 0.90825 0.91651 0.89822 0.89646 0.85429 0.85382 0.94711 0.94717 0.92678 0.85365 0.85395 0.89757 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.45 9.62 -35.23 -0.34 -3.79 16 3 C 0.08 0.57 5.52 37.16 0.21 0.77 16 4 C -0.10 -0.85 1.35 -153.86 -0.21 -1.06 16 5 C -0.12 -1.34 9.13 37.16 0.34 -1.00 16 6 C 0.14 1.24 7.89 -8.51 -0.07 1.17 16 7 N -1.04 -12.02 4.03 -124.98 -0.50 -12.52 16 8 S 2.72 40.17 6.27 -107.50 -0.67 39.50 16 9 O -0.96 -16.06 17.29 -57.17 -0.99 -17.05 16 10 O -0.96 -16.23 17.28 -57.17 -0.99 -17.22 16 11 C -0.70 -11.35 5.97 -39.59 -0.24 -11.58 16 12 C -0.02 -0.36 9.52 -39.59 -0.38 -0.74 16 13 C -0.15 -2.71 9.70 -39.58 -0.38 -3.10 16 14 C 0.03 0.57 5.07 -104.62 -0.53 0.04 16 15 C 0.04 0.94 5.10 -29.03 -0.15 0.79 16 16 C -0.52 -13.81 9.09 -34.44 -0.31 -14.12 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 20 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 C -0.14 -2.72 9.70 -39.58 -0.38 -3.11 16 25 C -0.02 -0.36 9.52 -39.58 -0.38 -0.74 16 26 C 0.14 1.34 7.85 -8.38 -0.07 1.28 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.31 7.90 -51.93 -0.41 -0.10 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.83 7.26 -51.93 -0.38 0.45 16 34 H 0.06 0.82 7.93 -51.93 -0.41 0.41 16 35 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 36 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 37 H 0.13 1.83 7.62 -52.48 -0.40 1.43 16 38 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 39 H 0.03 0.89 8.08 -51.93 -0.42 0.47 16 40 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 43 H 0.13 1.87 7.62 -52.49 -0.40 1.47 16 44 H 0.08 0.65 7.94 -51.93 -0.41 0.24 16 45 H 0.08 0.82 8.12 -51.92 -0.42 0.39 16 LS Contribution 390.21 15.07 5.88 5.88 Total: -1.00 -33.14 390.21 -10.44 -43.58 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -7.02 Total: -0.89 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: -1.53 Total: -28.55 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.23 Total: -37.27 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -2.32 Total: -38.06 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 40.17 SS G_CDS: -0.67 Total: 39.50 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.14 -10.44 -43.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885152406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.014 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds