Wall clock time and date at job start Sat Apr 11 2020 05:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00180 * 2 1 4 4 C 1.53002 * 109.47261 * 180.02562 * 3 2 1 5 5 C 1.52999 * 113.27895 * 313.06379 * 4 3 2 6 6 C 1.53501 * 114.20808 * 179.97438 * 4 3 2 7 7 N 1.47068 * 87.98347 * 220.14625 * 6 4 3 8 8 S 1.65603 * 136.05443 * 207.08094 * 7 6 4 9 9 O 1.42094 * 106.40226 * 336.46587 * 8 7 6 10 10 O 1.42101 * 106.40228 * 203.53890 * 8 7 6 11 11 C 1.76205 * 107.21426 * 90.00072 * 8 7 6 12 12 C 1.38228 * 120.00116 * 270.20933 * 11 8 7 13 13 C 1.38238 * 120.00114 * 180.26456 * 12 11 8 14 14 C 1.38234 * 119.99675 * 359.50218 * 13 12 11 15 15 C 1.50702 * 120.00257 * 180.25732 * 14 13 12 16 16 C 1.50701 * 109.46833 * 89.99861 * 15 14 13 17 17 H 1.08001 * 120.00342 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00009 * 179.97438 * 16 15 14 19 19 N 1.31507 * 119.99884 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00069 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46936 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47244 * 120.00518 * 20 18 16 23 23 H 1.48504 * 109.46784 * 240.00547 * 20 18 16 24 24 C 1.38235 * 120.00220 * 0.28720 * 14 13 12 25 25 C 1.38234 * 119.99800 * 89.99999 * 11 8 7 26 26 C 1.47064 * 87.88414 * 27.34225 * 7 6 4 27 27 H 1.09000 * 109.47171 * 60.00337 * 1 2 3 28 28 H 1.08998 * 109.47093 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46966 * 300.00266 * 1 2 3 30 30 H 1.09004 * 109.47421 * 59.99666 * 3 2 1 31 31 H 1.09007 * 109.47099 * 299.99658 * 3 2 1 32 32 H 1.08999 * 109.47316 * 286.93139 * 5 4 3 33 33 H 1.09002 * 109.47395 * 46.93494 * 5 4 3 34 34 H 1.09004 * 109.47150 * 166.93859 * 5 4 3 35 35 H 1.09002 * 113.46771 * 105.36537 * 6 4 3 36 36 H 1.09000 * 113.46358 * 334.92544 * 6 4 3 37 37 H 1.08004 * 120.00270 * 0.03858 * 12 11 8 38 38 H 1.08002 * 120.00519 * 179.78838 * 13 12 11 39 39 H 1.08993 * 109.47429 * 210.00613 * 15 14 13 40 40 H 1.08998 * 109.46961 * 330.00864 * 15 14 13 41 41 H 0.96998 * 119.99939 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.00471 * 179.97438 * 24 14 13 43 43 H 1.08001 * 120.00294 * 359.97438 * 25 11 8 44 44 H 1.08997 * 113.47220 * 87.44163 * 26 7 6 45 45 H 1.09008 * 113.46426 * 217.87603 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.0629 0.1800 1.0258 6 6 4.2735 2.5305 -0.0013 7 7 5.2333 1.9447 -0.9492 8 16 6.8232 2.1912 -1.3416 9 8 7.1287 3.5252 -0.9592 10 8 6.9896 1.7048 -2.6663 11 6 7.7853 1.1430 -0.3021 12 6 8.2257 1.6022 0.9250 13 6 8.9851 0.7817 1.7381 14 6 9.2954 -0.5015 1.3285 15 6 10.1184 -1.3980 2.2173 16 6 9.2051 -2.1796 3.1262 17 1 8.1357 -2.0413 3.0660 18 6 9.7347 -3.0720 4.0341 19 7 11.0369 -3.2408 4.1071 20 14 8.6026 -4.0413 5.1602 21 1 7.1918 -3.6708 4.8819 22 1 8.7902 -5.4946 4.9190 23 1 8.9260 -3.7286 6.5755 24 6 8.8514 -0.9623 0.1031 25 6 8.0961 -0.1401 -0.7120 26 6 4.1580 1.0484 -1.3999 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8901 32 1 3.9647 0.5985 2.0274 33 1 3.4872 -0.7432 0.9597 34 1 5.1126 -0.0310 0.8215 35 1 4.7149 2.7840 0.9625 36 1 3.6879 3.3464 -0.4250 37 1 7.9795 2.6033 1.2471 38 1 9.3321 1.1417 2.6955 39 1 10.6965 -2.0878 1.6025 40 1 10.7961 -0.7912 2.8178 41 1 11.4095 -3.8684 4.7460 42 1 9.0942 -1.9647 -0.2172 43 1 7.7488 -0.5003 -1.6692 44 1 3.5420 1.4735 -2.1923 45 1 4.5011 0.0391 -1.6276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885152406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:00 Heat of formation + Delta-G solvation = -86.301615 kcal Electronic energy + Delta-G solvation = -27536.654775 eV Core-core repulsion = 23646.462790 eV Total energy + Delta-G solvation = -3890.191985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.09587 -40.25565 -38.37378 -38.26585 -37.02681 -35.60345 -33.33336 -32.45713 -31.98864 -29.26348 -28.30576 -27.39462 -26.99512 -25.65871 -25.48220 -23.75359 -22.46177 -20.32357 -19.53090 -19.04713 -18.57110 -18.35324 -17.42059 -17.07538 -16.90343 -16.70097 -16.58497 -16.02686 -15.99468 -15.35839 -15.09528 -14.96417 -14.66211 -14.48580 -14.39632 -14.13957 -13.88090 -13.47096 -13.44259 -13.42005 -13.29817 -13.23208 -13.01608 -12.69478 -12.66685 -12.62874 -12.62238 -12.20091 -12.07019 -12.05470 -11.64889 -11.60369 -11.43235 -11.22189 -10.66162 -10.44838 -10.13593 -9.98799 -9.93892 -8.26725 -6.39723 -0.76236 -0.07843 0.37463 1.38142 1.39213 1.52089 1.90081 2.34941 2.55875 2.76758 2.81638 3.06147 3.09408 3.45805 3.65989 3.81383 3.93484 4.02493 4.13704 4.16126 4.33706 4.44940 4.54664 4.57578 4.59748 4.61749 4.68753 4.71738 4.74429 4.78859 4.88134 4.92523 4.97200 4.99024 5.05768 5.10912 5.12253 5.23308 5.25316 5.31242 5.45478 5.56439 5.67113 5.83900 5.90104 6.08894 6.36967 6.72316 7.29494 8.83891 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009684 B = 0.003694 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.777139 B = 7577.219914 C = 9818.728096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.079 3.921 4 C -0.089 4.089 5 C -0.124 4.124 6 C 0.136 3.864 7 N -1.048 6.048 8 S 2.747 3.253 9 O -0.978 6.978 10 O -0.981 6.981 11 C -0.698 4.698 12 C -0.017 4.017 13 C -0.153 4.153 14 C -0.001 4.001 15 C 0.047 3.953 16 C -0.529 4.529 17 H 0.057 0.943 18 C 0.008 3.992 19 N -0.928 5.928 20 Si 0.966 3.034 21 H -0.264 1.264 22 H -0.277 1.277 23 H -0.276 1.276 24 C -0.154 4.154 25 C -0.019 4.019 26 C 0.133 3.867 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.154 0.846 38 H 0.131 0.869 39 H 0.011 0.989 40 H 0.012 0.988 41 H 0.267 0.733 42 H 0.129 0.871 43 H 0.150 0.850 44 H 0.111 0.889 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.041 11.359 -9.160 26.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C 0.002 3.998 4 C -0.092 4.092 5 C -0.181 4.181 6 C 0.012 3.988 7 N -0.888 5.888 8 S 2.841 3.159 9 O -0.969 6.969 10 O -0.972 6.972 11 C -0.786 4.786 12 C -0.036 4.036 13 C -0.172 4.172 14 C -0.002 4.002 15 C 0.011 3.989 16 C -0.567 4.567 17 H 0.076 0.924 18 C -0.191 4.191 19 N -0.567 5.567 20 Si 0.790 3.210 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.201 1.201 24 C -0.173 4.173 25 C -0.038 4.038 26 C 0.008 3.992 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.106 0.894 36 H 0.135 0.865 37 H 0.172 0.828 38 H 0.149 0.851 39 H 0.029 0.971 40 H 0.030 0.970 41 H 0.076 0.924 42 H 0.147 0.853 43 H 0.168 0.832 44 H 0.129 0.871 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.215 11.723 -9.783 26.138 hybrid contribution 0.382 -1.219 1.306 1.828 sum -20.833 10.503 -8.477 24.823 Atomic orbital electron populations 1.22865 0.79819 1.03351 1.00861 1.87878 1.20968 1.28606 1.95610 1.22455 0.90370 0.84783 1.02238 1.22315 0.94100 0.96696 0.96064 1.21401 1.00023 0.98799 0.97872 1.22850 0.87235 0.95641 0.93062 1.59713 1.22912 1.52027 1.54165 0.99975 0.71071 0.72444 0.72366 1.93518 1.83764 1.35173 1.84448 1.93518 1.85663 1.82356 1.35673 1.30804 1.22382 1.11919 1.13448 1.20985 0.92373 0.99284 0.90959 1.21292 1.01115 0.93938 1.00845 1.20807 0.91900 0.94037 0.93412 1.18273 0.94211 0.93208 0.93252 1.21301 0.93228 1.23076 1.19106 0.92425 1.25904 0.96621 0.97821 0.98776 1.70072 1.12467 1.36916 1.37271 0.85377 0.79053 0.78218 0.78309 1.18783 1.20210 1.20127 1.21278 1.00681 1.00680 0.94639 1.20968 0.93074 0.91223 0.98555 1.22962 0.85164 0.94143 0.96922 0.92855 0.89503 0.93320 0.91284 0.90584 0.91682 0.91694 0.93971 0.89440 0.86471 0.82821 0.85135 0.97098 0.96986 0.92427 0.85327 0.83191 0.87119 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.51 16 2 O -0.41 -6.43 9.62 -148.98 -1.43 -7.87 16 3 C 0.08 0.88 5.52 71.98 0.40 1.27 16 4 C -0.09 -1.34 1.35 -51.76 -0.07 -1.41 16 5 C -0.12 -2.53 9.13 71.98 0.66 -1.87 16 6 C 0.14 1.94 7.89 83.18 0.66 2.59 16 7 N -1.05 -21.30 4.03 -549.31 -2.22 -23.52 16 8 S 2.75 75.50 6.27 -56.49 -0.35 75.14 16 9 O -0.98 -30.40 17.29 -128.00 -2.21 -32.61 16 10 O -0.98 -31.30 17.28 -128.00 -2.21 -33.52 16 11 C -0.70 -21.80 5.97 22.27 0.13 -21.67 16 12 C -0.02 -0.54 9.52 22.27 0.21 -0.33 16 13 C -0.15 -5.81 9.70 22.27 0.22 -5.59 16 14 C 0.00 -0.05 5.07 -19.87 -0.10 -0.15 16 15 C 0.05 2.46 5.10 29.10 0.15 2.61 16 16 C -0.53 -29.27 9.09 25.60 0.23 -29.04 16 17 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 18 C 0.01 0.42 5.46 84.66 0.46 0.88 16 19 N -0.93 -54.62 13.29 21.45 0.28 -54.33 16 20 Si 0.97 43.13 29.54 68.60 2.03 45.16 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 24 C -0.15 -5.92 9.70 22.27 0.22 -5.71 16 25 C -0.02 -0.63 9.52 22.27 0.21 -0.41 16 26 C 0.13 2.18 7.85 83.26 0.65 2.84 16 27 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.08 0.53 7.90 -2.38 -0.02 0.51 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.42 7.26 -2.39 -0.02 1.40 16 34 H 0.04 1.04 7.93 -2.38 -0.02 1.02 16 35 H 0.09 1.20 8.12 -2.39 -0.02 1.18 16 36 H 0.12 0.99 8.10 -2.39 -0.02 0.97 16 37 H 0.15 4.10 7.62 -2.91 -0.02 4.08 16 38 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 39 H 0.01 0.59 8.08 -2.39 -0.02 0.57 16 40 H 0.01 0.65 8.09 -2.39 -0.02 0.63 16 41 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 43 H 0.15 4.21 7.62 -2.91 -0.02 4.19 16 44 H 0.11 1.27 7.94 -2.39 -0.02 1.25 16 45 H 0.07 1.35 8.12 -2.38 -0.02 1.33 16 Total: -1.00 -72.37 390.21 0.13 -72.25 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.97 Total: 13.76 kcal Atomic # 6 Polarization: -59.74 SS G_CDS: 5.28 Total: -54.47 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -1.93 Total: -77.85 kcal Atomic # 8 Polarization: -68.14 SS G_CDS: -5.86 Total: -74.00 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 75.50 SS G_CDS: -0.35 Total: 75.14 kcal Total: -72.37 0.13 -72.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885152406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.055 kcal (2) G-P(sol) polarization free energy of solvation -72.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds