Wall clock time and date at job start Sat Apr 11 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.87167 * 2 1 4 4 O 1.43748 * 109.87763 * 238.83801 * 2 1 3 5 5 C 1.44378 * 106.97384 * 267.08802 * 4 2 1 6 6 C 1.54999 * 103.49125 * 319.94283 * 5 4 2 7 7 C 1.54099 * 109.87950 * 121.00623 * 2 1 3 8 8 H 1.09001 * 110.48937 * 358.58258 * 7 2 1 9 9 N 1.46504 * 110.48651 * 236.06862 * 7 2 1 10 10 S 1.65606 * 119.99761 * 145.00116 * 9 7 2 11 11 O 1.42099 * 106.40007 * 311.45950 * 10 9 7 12 12 O 1.42098 * 106.40005 * 178.54000 * 10 9 7 13 13 C 1.76199 * 107.21944 * 64.99812 * 10 9 7 14 14 C 1.38237 * 119.99795 * 89.99952 * 13 10 9 15 15 C 1.38240 * 119.99892 * 180.02562 * 14 13 10 16 16 C 1.38238 * 119.99966 * 359.95674 * 15 14 13 17 17 C 1.50698 * 119.99845 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.46993 * 90.00057 * 17 16 15 19 19 H 1.07991 * 120.00449 * 359.72131 * 18 17 16 20 20 C 1.37885 * 119.99686 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00035 * 179.72339 * 20 18 17 22 22 Si 1.86803 * 119.99853 * 359.72191 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00256 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00273 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00102 * 22 20 18 26 26 C 1.38240 * 119.99731 * 0.27223 * 16 15 14 27 27 C 1.38233 * 120.00248 * 359.52316 * 26 16 15 28 28 H 1.09005 * 109.46862 * 298.99611 * 1 2 3 29 29 H 1.09001 * 109.46712 * 58.99188 * 1 2 3 30 30 H 1.08993 * 109.47213 * 178.99204 * 1 2 3 31 31 H 1.09005 * 109.47095 * 181.00804 * 3 2 1 32 32 H 1.09003 * 109.47039 * 301.00302 * 3 2 1 33 33 H 1.08996 * 109.47378 * 61.00453 * 3 2 1 34 34 H 1.08998 * 110.61833 * 78.43938 * 5 4 2 35 35 H 1.09001 * 110.61826 * 201.28111 * 5 4 2 36 36 H 1.09005 * 110.90457 * 278.81869 * 6 5 4 37 37 H 1.08995 * 110.90795 * 155.22552 * 6 5 4 38 38 H 0.97001 * 120.00093 * 324.99813 * 9 7 2 39 39 H 1.07997 * 120.00113 * 359.97438 * 14 13 10 40 40 H 1.07993 * 119.99866 * 179.97438 * 15 14 13 41 41 H 1.08998 * 109.47083 * 329.99473 * 17 16 15 42 42 H 1.09001 * 109.46875 * 209.99736 * 17 16 15 43 43 H 0.97000 * 119.99706 * 179.97438 * 21 20 18 44 44 H 1.07995 * 119.99782 * 179.72830 * 26 16 15 45 45 H 1.07998 * 120.00399 * 180.25094 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 8 2.0187 -0.6995 -1.1568 5 6 2.2280 -2.0724 -0.7619 6 6 2.8324 -1.9515 0.6603 7 6 2.0540 -0.7465 1.2421 8 1 1.2238 -1.0885 1.8601 9 7 2.9488 0.1153 2.0187 10 16 2.9710 0.0105 3.6713 11 8 1.6149 0.0498 4.0940 12 8 3.9517 0.9363 4.1188 13 6 3.5747 -1.5924 4.0843 14 6 4.9308 -1.7966 4.2581 15 6 5.4046 -3.0543 4.5816 16 6 4.5221 -4.1077 4.7322 17 6 5.0385 -5.4787 5.0854 18 6 5.0801 -5.6289 6.5843 19 1 4.7685 -4.8118 7.2178 20 6 5.5210 -6.8080 7.1469 21 7 5.5625 -6.9373 8.4550 22 14 6.0594 -8.2218 6.0511 23 1 7.5123 -8.1031 5.7679 24 1 5.7928 -9.5105 6.7390 25 1 5.3010 -8.1757 4.7751 26 6 3.1664 -3.9045 4.5536 27 6 2.6923 -2.6459 4.2343 28 1 -0.3633 0.4982 0.8989 29 1 -0.3633 0.5294 -0.8808 30 1 -0.3633 -1.0274 -0.0181 31 1 3.1399 1.4313 -0.0181 32 1 1.6757 1.9605 -0.8809 33 1 1.7051 1.9499 0.8988 34 1 1.2813 -2.6118 -0.7320 35 1 2.9273 -2.5640 -1.4383 36 1 3.9003 -1.7383 0.6122 37 1 2.6432 -2.8541 1.2413 38 1 3.5282 0.7471 1.5649 39 1 5.6202 -0.9737 4.1404 40 1 6.4640 -3.2139 4.7170 41 1 6.0422 -5.6045 4.6795 42 1 4.3781 -6.2357 4.6625 43 1 5.8723 -7.7669 8.8508 44 1 2.4774 -4.7284 4.6669 45 1 1.6328 -2.4862 4.0988 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885214511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:21 Heat of formation + Delta-G solvation = -98.108319 kcal Electronic energy + Delta-G solvation = -27975.157837 eV Core-core repulsion = 24084.453875 eV Total energy + Delta-G solvation = -3890.703962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.46829 -38.94706 -37.23043 -35.86102 -35.33517 -33.73453 -32.86004 -31.77935 -30.76317 -30.64689 -28.02057 -27.62844 -25.70672 -23.55696 -22.49018 -22.14500 -20.79319 -20.42484 -19.63520 -18.09485 -17.55428 -16.94727 -16.83118 -16.28920 -15.74280 -15.47569 -15.12809 -14.79079 -14.57861 -14.33498 -13.93488 -13.63204 -13.42416 -13.40336 -13.23269 -12.80858 -12.67330 -12.61453 -12.57495 -12.15848 -12.09254 -12.02954 -11.94299 -11.89466 -11.82098 -11.51500 -11.41714 -11.09532 -11.02837 -10.96849 -10.57030 -10.28752 -10.19106 -10.06039 -9.67288 -9.56333 -8.73981 -8.69120 -8.50039 -6.21750 -4.23565 0.39394 1.20178 1.67507 2.91445 3.17432 3.26005 3.26420 3.45289 3.66301 4.00228 4.10649 4.27406 4.30475 4.37767 4.50544 4.71009 4.77515 4.80636 4.97582 5.05489 5.12858 5.15285 5.22776 5.29924 5.33281 5.44327 5.48798 5.49892 5.52355 5.67885 5.71881 5.76997 5.81820 5.84452 5.94400 6.10183 6.18678 6.38227 6.58506 6.64600 6.65294 6.71167 6.76867 7.23646 7.25334 7.49932 8.31016 8.81837 9.36329 10.90761 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017401 B = 0.003074 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.762586 B = 9105.091206 C =10026.223363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.096 3.904 3 C -0.145 4.145 4 O -0.365 6.365 5 C 0.047 3.953 6 C -0.176 4.176 7 C 0.127 3.873 8 H 0.110 0.890 9 N -1.110 6.110 10 S 2.694 3.306 11 O -0.962 6.962 12 O -0.963 6.963 13 C -0.699 4.699 14 C -0.019 4.019 15 C -0.142 4.142 16 C 0.032 3.968 17 C 0.006 3.994 18 C -0.521 4.521 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.894 5.894 22 Si 0.879 3.121 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.265 1.265 26 C -0.142 4.142 27 C -0.024 4.024 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.419 0.581 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.029 0.971 42 H 0.034 0.966 43 H 0.267 0.733 44 H 0.129 0.871 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.519 12.736 -19.773 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.055 3.945 3 C -0.202 4.202 4 O -0.284 6.284 5 C -0.030 4.030 6 C -0.215 4.215 7 C 0.019 3.981 8 H 0.128 0.872 9 N -0.870 5.870 10 S 2.786 3.214 11 O -0.952 6.952 12 O -0.953 6.953 13 C -0.789 4.789 14 C -0.039 4.039 15 C -0.161 4.161 16 C 0.032 3.968 17 C -0.031 4.031 18 C -0.559 4.559 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.531 5.531 22 Si 0.706 3.294 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.189 1.189 26 C -0.161 4.161 27 C -0.043 4.043 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.256 0.744 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.147 0.853 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.817 13.263 -19.142 24.565 hybrid contribution 0.898 -1.526 -0.355 1.806 sum -6.919 11.737 -19.498 23.786 Atomic orbital electron populations 1.22280 0.93995 1.02943 1.03172 1.22256 0.94138 0.93458 0.84653 1.21876 1.01603 0.93807 1.02924 1.88934 1.86066 1.20772 1.32676 1.23516 1.00119 0.84189 0.95160 1.23715 1.01886 0.98968 0.96931 1.22216 0.92312 0.89705 0.93887 0.87202 1.55827 1.53625 1.51373 1.26157 1.01715 0.73733 0.74006 0.71914 1.93566 1.34885 1.86825 1.79920 1.93580 1.61624 1.61071 1.79040 1.30328 1.03142 1.22056 1.23347 1.20761 0.92857 0.97450 0.92827 1.21224 1.00567 0.92324 1.02021 1.20699 0.93049 0.97370 0.85678 1.18983 0.96627 0.88883 0.98606 1.20815 1.45265 1.01578 0.88208 0.90669 1.24991 0.94780 0.98313 0.94933 1.69888 1.46546 1.26884 1.09824 0.86789 0.79527 0.81987 0.81104 1.20032 1.21049 1.18948 1.21205 0.95818 0.97016 1.02082 1.20754 0.98251 0.91935 0.93406 0.90859 0.91436 0.91903 0.91688 0.91492 0.90634 0.91825 0.88611 0.89206 0.89058 0.74360 0.85139 0.85258 0.95265 0.94807 0.92336 0.85259 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 8.61 37.16 0.32 -0.91 16 2 C 0.10 0.80 1.19 -90.05 -0.11 0.69 16 3 C -0.14 -1.06 7.69 37.16 0.29 -0.78 16 4 O -0.37 -3.44 10.86 -35.23 -0.38 -3.83 16 5 C 0.05 0.36 7.66 38.21 0.29 0.65 16 6 C -0.18 -1.44 6.88 -24.72 -0.17 -1.61 16 7 C 0.13 1.11 3.32 -66.40 -0.22 0.89 16 8 H 0.11 0.94 7.12 -51.93 -0.37 0.57 16 9 N -1.11 -10.25 4.72 -3.59 -0.02 -10.27 16 10 S 2.69 34.88 5.72 -107.50 -0.61 34.26 16 11 O -0.96 -14.53 16.66 -57.17 -0.95 -15.48 16 12 O -0.96 -14.87 17.28 -57.17 -0.99 -15.86 16 13 C -0.70 -10.17 5.95 -39.58 -0.24 -10.40 16 14 C -0.02 -0.30 9.52 -39.58 -0.38 -0.67 16 15 C -0.14 -2.47 9.70 -39.58 -0.38 -2.85 16 16 C 0.03 0.62 5.07 -104.62 -0.53 0.09 16 17 C 0.01 0.13 4.17 -29.04 -0.12 0.01 16 18 C -0.52 -14.10 9.65 -34.44 -0.33 -14.44 16 19 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 20 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 21 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 22 Si 0.88 20.34 27.47 -169.99 -4.67 15.67 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 26 C -0.14 -2.42 9.70 -39.58 -0.38 -2.80 16 27 C -0.02 -0.36 9.52 -39.58 -0.38 -0.73 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.43 8.11 -51.93 -0.42 0.01 16 31 H 0.06 0.44 6.76 -51.93 -0.35 0.09 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 34 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.75 8.06 -51.93 -0.42 0.33 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.42 3.13 6.50 -34.48 -0.22 2.91 16 39 H 0.13 1.72 7.62 -52.49 -0.40 1.32 16 40 H 0.13 2.12 8.06 -52.49 -0.42 1.69 16 41 H 0.03 0.62 7.52 -51.93 -0.39 0.23 16 42 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 43 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 45 H 0.13 1.61 7.62 -52.49 -0.40 1.21 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -33.60 377.10 -10.33 -43.93 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.72 Total: 2.64 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: -2.44 Total: -30.96 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.76 Total: -36.06 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -2.32 Total: -35.17 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.67 Total: 15.67 kcal Atomic # 16 Polarization: 34.88 SS G_CDS: -0.61 Total: 34.26 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.60 -10.33 -43.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885214511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.179 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds