Wall clock time and date at job start Sat Apr 11 2020 05:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47381 * 2 1 4 4 C 1.52998 * 113.54099 * 184.57530 * 3 2 1 5 5 N 1.46497 * 109.47402 * 175.41974 * 4 3 2 6 6 S 1.65603 * 119.99851 * 164.99958 * 5 4 3 7 7 O 1.42097 * 106.40264 * 178.54254 * 6 5 4 8 8 O 1.42099 * 106.40515 * 311.45928 * 6 5 4 9 9 C 1.76198 * 107.21999 * 65.00359 * 6 5 4 10 10 C 1.38240 * 119.99591 * 269.72521 * 9 6 5 11 11 C 1.38239 * 119.99294 * 179.76140 * 10 9 6 12 12 C 1.38228 * 120.00469 * 0.48813 * 11 10 9 13 13 C 1.50700 * 120.00201 * 179.76390 * 12 11 10 14 14 C 1.50695 * 109.47310 * 270.02307 * 13 12 11 15 15 H 1.07999 * 119.99904 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00162 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99766 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00139 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47042 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47085 * 119.99433 * 18 16 14 21 21 H 1.48497 * 109.47037 * 239.99700 * 18 16 14 22 22 C 1.38243 * 119.99797 * 359.79136 * 12 11 10 23 23 C 1.38226 * 120.00085 * 89.99485 * 9 6 5 24 24 C 1.53367 * 114.56478 * 50.32976 * 3 2 1 25 25 O 1.43355 * 88.44795 * 220.42142 * 24 3 2 26 26 C 1.43354 * 88.31830 * 28.15101 * 25 24 3 27 27 H 1.08996 * 109.47410 * 300.00493 * 1 2 3 28 28 H 1.09006 * 109.46812 * 60.00356 * 1 2 3 29 29 H 1.09001 * 109.47391 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47410 * 239.99507 * 2 1 3 31 31 H 1.09003 * 109.46833 * 120.00177 * 2 1 3 32 32 H 1.09005 * 109.46879 * 295.42240 * 4 3 2 33 33 H 1.09001 * 109.47072 * 55.41585 * 4 3 2 34 34 H 0.96998 * 120.00094 * 345.00089 * 5 4 3 35 35 H 1.07993 * 120.00568 * 0.02562 * 10 9 6 36 36 H 1.08006 * 119.99461 * 180.25171 * 11 10 9 37 37 H 1.08992 * 109.47037 * 30.02418 * 13 12 11 38 38 H 1.09003 * 109.46972 * 150.02772 * 13 12 11 39 39 H 0.97002 * 119.99775 * 179.97438 * 17 16 14 40 40 H 1.07995 * 119.99653 * 179.97438 * 22 12 11 41 41 H 1.08000 * 120.00580 * 0.02562 * 23 9 6 42 42 H 1.09006 * 113.39116 * 105.52823 * 24 3 2 43 43 H 1.08992 * 113.39243 * 335.31844 * 24 3 2 44 44 H 1.08998 * 113.38952 * 86.74569 * 26 25 24 45 45 H 1.09001 * 113.39148 * 216.94625 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5619 1.5524 -0.1119 5 7 3.9434 2.9632 -0.2137 6 16 5.5189 3.4142 0.0252 7 8 5.5683 4.8203 -0.1736 8 8 5.9388 2.7841 1.2276 9 6 6.4698 2.6946 -1.2720 10 6 7.0250 1.4394 -1.1075 11 6 7.7669 0.8729 -2.1271 12 6 7.9620 1.5657 -3.3072 13 6 8.7753 0.9502 -4.4167 14 6 10.2238 1.3299 -4.2479 15 1 10.5253 1.9548 -3.4202 16 6 11.1641 0.8805 -5.1506 17 7 10.7968 0.1200 -6.1588 18 14 12.9598 1.3506 -4.9410 19 1 13.1101 2.2061 -3.7365 20 1 13.7778 0.1216 -4.7809 21 1 13.4189 2.0982 -6.1391 22 6 7.4116 2.8234 -3.4695 23 6 6.6652 3.3876 -2.4519 24 6 1.4130 2.3404 1.0737 25 8 1.3583 3.3950 0.1042 26 6 1.2618 2.3939 -0.9173 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 4.0238 1.1140 0.7727 33 1 3.9003 1.0195 -1.0004 34 1 3.2733 3.6331 -0.4210 35 1 6.8756 0.8996 -0.1842 36 1 8.1973 -0.1096 -2.0001 37 1 8.6774 -0.1347 -4.3801 38 1 8.4136 1.3155 -5.3779 39 1 11.4582 -0.1959 -6.7941 40 1 7.5645 3.3648 -4.3913 41 1 6.2355 4.3703 -2.5787 42 1 2.0839 2.5524 1.9063 43 1 0.4300 2.0020 1.4008 44 1 0.2393 2.0694 -1.1099 45 1 1.8001 2.6527 -1.8291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885222061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:23 Heat of formation + Delta-G solvation = -68.272380 kcal Electronic energy + Delta-G solvation = -27376.240253 eV Core-core repulsion = 23486.830075 eV Total energy + Delta-G solvation = -3889.410178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.82919 -38.80524 -37.10845 -35.72199 -35.32305 -34.16586 -33.68275 -31.56148 -30.57976 -29.10321 -27.43517 -26.70979 -25.86938 -23.73220 -23.61020 -22.34017 -20.91011 -19.72418 -18.94627 -17.85669 -17.35694 -16.74637 -16.62076 -16.45443 -16.22370 -15.73808 -15.13175 -14.91500 -14.56341 -14.37060 -14.25522 -14.23657 -13.77215 -13.59604 -13.10708 -12.87467 -12.71799 -12.49175 -12.41025 -12.22834 -11.97687 -11.88930 -11.70098 -11.69301 -11.54824 -11.49860 -11.02659 -10.93973 -10.93487 -10.70578 -10.49912 -10.49589 -9.96091 -9.78438 -9.67782 -9.51529 -8.59667 -8.55134 -8.38911 -6.18395 -4.23230 0.54669 1.32874 1.78914 3.07571 3.22530 3.30644 3.36069 3.55952 3.58868 3.81559 4.10913 4.13864 4.36725 4.40675 4.58219 4.63374 4.71966 4.97845 5.01224 5.06542 5.14436 5.16766 5.20775 5.23956 5.26702 5.30781 5.41716 5.50379 5.60937 5.62401 5.67687 5.71657 5.78594 5.83557 5.88418 5.90813 6.24508 6.32858 6.50785 6.83276 6.89554 6.98022 7.28285 7.42401 7.57916 7.77086 8.12249 8.81912 9.41917 10.91685 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018646 B = 0.002643 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.264557 B =10592.593562 C =11356.496689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.111 4.111 3 C -0.135 4.135 4 C 0.144 3.856 5 N -1.119 6.119 6 S 2.698 3.302 7 O -0.965 6.965 8 O -0.967 6.967 9 C -0.704 4.704 10 C -0.026 4.026 11 C -0.146 4.146 12 C 0.026 3.974 13 C 0.039 3.961 14 C -0.517 4.517 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.146 4.146 23 C -0.022 4.022 24 C 0.035 3.965 25 O -0.366 6.366 26 C 0.027 3.973 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.423 0.577 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.263 0.737 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.031 -0.282 11.609 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.149 4.149 3 C -0.137 4.137 4 C 0.018 3.982 5 N -0.884 5.884 6 S 2.791 3.209 7 O -0.955 6.955 8 O -0.957 6.957 9 C -0.793 4.793 10 C -0.045 4.045 11 C -0.164 4.164 12 C 0.026 3.974 13 C 0.002 3.998 14 C -0.555 4.555 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.165 4.165 23 C -0.041 4.041 24 C -0.042 4.042 25 O -0.284 6.284 26 C -0.050 4.050 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.263 0.737 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.537 0.332 12.200 24.754 hybrid contribution 0.958 -0.101 -0.810 1.259 sum -20.579 0.230 11.390 23.522 Atomic orbital electron populations 1.21993 0.95400 1.02286 1.02079 1.21333 0.96071 0.93986 1.03492 1.23349 0.95647 0.96808 0.97919 1.20903 0.92634 0.81736 1.02955 1.55727 1.27832 1.15233 1.89649 1.01531 0.72191 0.73136 0.74078 1.93567 1.85984 1.29215 1.86783 1.93546 1.81219 1.77670 1.43262 1.30351 1.23091 1.08464 1.17432 1.20781 0.93439 0.92269 0.98024 1.21240 1.00383 1.01235 0.93585 1.21114 0.88106 0.92471 0.95727 1.18539 0.93751 0.96509 0.90961 1.21011 0.90791 1.32128 1.11536 0.92235 1.25006 0.99353 0.94828 0.94977 1.69956 1.34409 1.34453 1.14180 0.86429 0.84323 0.78420 0.78285 1.19556 1.20787 1.20795 1.21252 0.99397 0.96207 0.99606 1.20777 0.94563 0.97672 0.91096 1.23910 1.00778 0.85685 0.93845 1.89782 1.94409 1.25161 1.19009 1.24009 1.00597 0.86662 0.93704 0.92309 0.92118 0.92079 0.90587 0.90652 0.89365 0.90480 0.73664 0.85284 0.85365 0.94722 0.94736 0.92685 0.85368 0.85269 0.89225 0.89533 0.89162 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 9.00 37.15 0.33 -0.34 16 2 C -0.11 -0.56 5.80 -26.74 -0.16 -0.71 16 3 C -0.14 -0.91 1.58 -154.13 -0.24 -1.15 16 4 C 0.14 1.23 5.95 -4.04 -0.02 1.20 16 5 N -1.12 -11.92 5.54 -10.61 -0.06 -11.98 16 6 S 2.70 38.26 5.74 -107.50 -0.62 37.64 16 7 O -0.97 -16.31 17.28 -57.18 -0.99 -17.30 16 8 O -0.97 -15.59 16.75 -57.18 -0.96 -16.55 16 9 C -0.70 -11.03 5.95 -39.58 -0.24 -11.27 16 10 C -0.03 -0.41 9.52 -39.58 -0.38 -0.78 16 11 C -0.15 -2.65 9.70 -39.58 -0.38 -3.03 16 12 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 13 C 0.04 0.95 5.10 -29.04 -0.15 0.80 16 14 C -0.52 -13.98 9.09 -34.44 -0.31 -14.29 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 18 Si 0.90 21.11 29.54 -169.99 -5.02 16.08 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.15 -2.70 9.70 -39.58 -0.38 -3.09 16 23 C -0.02 -0.36 9.52 -39.59 -0.38 -0.73 16 24 C 0.03 0.25 7.55 24.60 0.19 0.44 16 25 O -0.37 -3.44 10.58 -35.23 -0.37 -3.81 16 26 C 0.03 0.19 7.08 24.60 0.17 0.36 16 27 H 0.06 0.23 6.19 -51.93 -0.32 -0.09 16 28 H 0.06 0.25 6.10 -51.93 -0.32 -0.07 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.72 7.75 -51.93 -0.40 0.32 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.42 4.36 5.79 -34.47 -0.20 4.16 16 35 H 0.13 1.73 7.61 -52.49 -0.40 1.33 16 36 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 37 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 38 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 41 H 0.13 1.86 7.62 -52.49 -0.40 1.46 16 42 H 0.09 0.68 8.13 -51.93 -0.42 0.26 16 43 H 0.09 0.47 5.96 -51.93 -0.31 0.16 16 44 H 0.09 0.49 5.62 -51.93 -0.29 0.20 16 45 H 0.09 0.64 8.04 -51.93 -0.42 0.22 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -33.32 375.84 -10.59 -43.90 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.40 Total: 2.08 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: -2.58 Total: -31.03 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.68 Total: -36.68 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -2.32 Total: -37.66 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 38.26 SS G_CDS: -0.62 Total: 37.64 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.32 -10.59 -43.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885222061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.369 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds