Wall clock time and date at job start Sat Apr 11 2020 05:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47381 * 2 1 4 4 C 1.52998 * 113.54099 * 184.57530 * 3 2 1 5 5 N 1.46497 * 109.47402 * 175.41974 * 4 3 2 6 6 S 1.65603 * 119.99851 * 164.99958 * 5 4 3 7 7 O 1.42097 * 106.40264 * 178.54254 * 6 5 4 8 8 O 1.42099 * 106.40515 * 311.45928 * 6 5 4 9 9 C 1.76198 * 107.21999 * 65.00359 * 6 5 4 10 10 C 1.38240 * 119.99591 * 269.72521 * 9 6 5 11 11 C 1.38239 * 119.99294 * 179.76140 * 10 9 6 12 12 C 1.38228 * 120.00469 * 0.48813 * 11 10 9 13 13 C 1.50700 * 120.00201 * 179.76390 * 12 11 10 14 14 C 1.50695 * 109.47310 * 270.02307 * 13 12 11 15 15 H 1.07999 * 119.99904 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00162 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99766 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00139 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47042 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47085 * 119.99433 * 18 16 14 21 21 H 1.48497 * 109.47037 * 239.99700 * 18 16 14 22 22 C 1.38243 * 119.99797 * 359.79136 * 12 11 10 23 23 C 1.38226 * 120.00085 * 89.99485 * 9 6 5 24 24 C 1.53367 * 114.56478 * 50.32976 * 3 2 1 25 25 O 1.43355 * 88.44795 * 220.42142 * 24 3 2 26 26 C 1.43354 * 88.31830 * 28.15101 * 25 24 3 27 27 H 1.08996 * 109.47410 * 300.00493 * 1 2 3 28 28 H 1.09006 * 109.46812 * 60.00356 * 1 2 3 29 29 H 1.09001 * 109.47391 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47410 * 239.99507 * 2 1 3 31 31 H 1.09003 * 109.46833 * 120.00177 * 2 1 3 32 32 H 1.09005 * 109.46879 * 295.42240 * 4 3 2 33 33 H 1.09001 * 109.47072 * 55.41585 * 4 3 2 34 34 H 0.96998 * 120.00094 * 345.00089 * 5 4 3 35 35 H 1.07993 * 120.00568 * 0.02562 * 10 9 6 36 36 H 1.08006 * 119.99461 * 180.25171 * 11 10 9 37 37 H 1.08992 * 109.47037 * 30.02418 * 13 12 11 38 38 H 1.09003 * 109.46972 * 150.02772 * 13 12 11 39 39 H 0.97002 * 119.99775 * 179.97438 * 17 16 14 40 40 H 1.07995 * 119.99653 * 179.97438 * 22 12 11 41 41 H 1.08000 * 120.00580 * 0.02562 * 23 9 6 42 42 H 1.09006 * 113.39116 * 105.52823 * 24 3 2 43 43 H 1.08992 * 113.39243 * 335.31844 * 24 3 2 44 44 H 1.08998 * 113.38952 * 86.74569 * 26 25 24 45 45 H 1.09001 * 113.39148 * 216.94625 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5619 1.5524 -0.1119 5 7 3.9434 2.9632 -0.2137 6 16 5.5189 3.4142 0.0252 7 8 5.5683 4.8203 -0.1736 8 8 5.9388 2.7841 1.2276 9 6 6.4698 2.6946 -1.2720 10 6 7.0250 1.4394 -1.1075 11 6 7.7669 0.8729 -2.1271 12 6 7.9620 1.5657 -3.3072 13 6 8.7753 0.9502 -4.4167 14 6 10.2238 1.3299 -4.2479 15 1 10.5253 1.9548 -3.4202 16 6 11.1641 0.8805 -5.1506 17 7 10.7968 0.1200 -6.1588 18 14 12.9598 1.3506 -4.9410 19 1 13.1101 2.2061 -3.7365 20 1 13.7778 0.1216 -4.7809 21 1 13.4189 2.0982 -6.1391 22 6 7.4116 2.8234 -3.4695 23 6 6.6652 3.3876 -2.4519 24 6 1.4130 2.3404 1.0737 25 8 1.3583 3.3950 0.1042 26 6 1.2618 2.3939 -0.9173 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 4.0238 1.1140 0.7727 33 1 3.9003 1.0195 -1.0004 34 1 3.2733 3.6331 -0.4210 35 1 6.8756 0.8996 -0.1842 36 1 8.1973 -0.1096 -2.0001 37 1 8.6774 -0.1347 -4.3801 38 1 8.4136 1.3155 -5.3779 39 1 11.4582 -0.1959 -6.7941 40 1 7.5645 3.3648 -4.3913 41 1 6.2355 4.3703 -2.5787 42 1 2.0839 2.5524 1.9063 43 1 0.4300 2.0020 1.4008 44 1 0.2393 2.0694 -1.1099 45 1 1.8001 2.6527 -1.8291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885222061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:23 Heat of formation + Delta-G solvation = -90.525680 kcal Electronic energy + Delta-G solvation = -27377.205228 eV Core-core repulsion = 23486.830075 eV Total energy + Delta-G solvation = -3890.375154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.39358 -40.23240 -38.35395 -36.97414 -36.05909 -35.59360 -34.71889 -33.31676 -31.95878 -29.65756 -29.24509 -27.23461 -26.49434 -25.59324 -24.08705 -23.70385 -22.47697 -20.69082 -19.74169 -18.97676 -18.58498 -18.31790 -17.55842 -17.19760 -16.90758 -16.82627 -16.72420 -16.05044 -15.98634 -15.40589 -15.29894 -15.05353 -14.65062 -14.63255 -14.45234 -14.12165 -13.93495 -13.44586 -13.41841 -13.37709 -13.30127 -13.18540 -13.11913 -12.84657 -12.69015 -12.65641 -12.25129 -12.16375 -12.03709 -11.99606 -11.65749 -11.53567 -11.44332 -11.15561 -10.66078 -10.55692 -10.37776 -9.96032 -9.94806 -8.27675 -6.40080 -0.62129 -0.06563 0.40056 1.36806 1.38540 1.51030 2.02490 2.34575 2.56821 2.80468 3.04481 3.05140 3.05874 3.30229 3.59536 3.87496 3.98327 4.03506 4.16250 4.21504 4.24649 4.37016 4.47856 4.48984 4.56957 4.59112 4.63059 4.74985 4.79873 4.81394 4.84551 4.91776 4.99911 5.09333 5.11209 5.18861 5.25205 5.26464 5.31685 5.33074 5.33687 5.50443 5.67124 5.86593 5.92519 6.09898 6.11721 6.71986 7.29092 8.82574 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018646 B = 0.002643 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.264557 B =10592.593562 C =11356.496689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.107 4.107 3 C -0.127 4.127 4 C 0.130 3.870 5 N -1.106 6.106 6 S 2.724 3.276 7 O -0.990 6.990 8 O -0.982 6.982 9 C -0.699 4.699 10 C -0.018 4.018 11 C -0.152 4.152 12 C -0.003 4.003 13 C 0.048 3.952 14 C -0.533 4.533 15 H 0.053 0.947 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.963 3.037 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.276 1.276 22 C -0.155 4.155 23 C -0.020 4.020 24 C 0.030 3.970 25 O -0.392 6.392 26 C 0.023 3.977 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.427 0.573 35 H 0.159 0.841 36 H 0.132 0.868 37 H 0.015 0.985 38 H 0.013 0.987 39 H 0.267 0.733 40 H 0.128 0.872 41 H 0.151 0.849 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.103 -0.280 13.154 26.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.146 4.146 3 C -0.129 4.129 4 C 0.005 3.995 5 N -0.874 5.874 6 S 2.815 3.185 7 O -0.981 6.981 8 O -0.972 6.972 9 C -0.786 4.786 10 C -0.037 4.037 11 C -0.171 4.171 12 C -0.003 4.003 13 C 0.011 3.989 14 C -0.570 4.570 15 H 0.071 0.929 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.788 3.212 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.201 1.201 22 C -0.174 4.174 23 C -0.039 4.039 24 C -0.046 4.046 25 O -0.311 6.311 26 C -0.053 4.053 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.269 0.731 35 H 0.177 0.823 36 H 0.150 0.850 37 H 0.034 0.966 38 H 0.031 0.969 39 H 0.076 0.924 40 H 0.146 0.854 41 H 0.169 0.831 42 H 0.102 0.898 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.605 0.327 13.734 26.452 hybrid contribution 1.152 -0.099 -1.225 1.685 sum -21.452 0.228 12.508 24.834 Atomic orbital electron populations 1.21996 0.94685 1.02716 1.02348 1.21338 0.96634 0.92660 1.03930 1.23247 0.94238 0.97866 0.97589 1.21225 0.94226 0.80242 1.03822 1.55441 1.26116 1.16570 1.89267 1.00749 0.72520 0.72093 0.73182 1.93532 1.86684 1.30926 1.86930 1.93527 1.82068 1.77836 1.43741 1.30743 1.22385 1.08108 1.17388 1.21057 0.92006 0.92332 0.98289 1.21316 1.00892 1.01500 0.93415 1.20820 0.89911 0.93830 0.95726 1.18264 0.93496 0.95429 0.91680 1.21316 0.92522 1.31914 1.11295 0.92903 1.25848 1.03692 0.94721 0.94638 1.70057 1.35922 1.35463 1.14988 0.85423 0.79158 0.78325 0.78325 1.19283 1.19959 1.20108 1.21292 0.99931 0.95721 1.00481 1.20994 0.93776 0.98506 0.90668 1.24081 1.01818 0.85243 0.93492 1.89758 1.94590 1.26531 1.20198 1.24178 1.01707 0.86184 0.93258 0.91932 0.91944 0.91610 0.90372 0.90041 0.88708 0.89501 0.73116 0.82312 0.84966 0.96624 0.96914 0.92373 0.85402 0.83117 0.89834 0.87627 0.87432 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.00 71.98 0.65 -0.29 16 2 C -0.11 -0.80 5.80 30.59 0.18 -0.63 16 3 C -0.13 -1.42 1.58 -51.94 -0.08 -1.50 16 4 C 0.13 1.92 5.95 86.38 0.51 2.43 16 5 N -1.11 -21.35 5.54 -187.49 -1.04 -22.39 16 6 S 2.72 71.89 5.74 -56.49 -0.32 71.57 16 7 O -0.99 -31.84 17.28 -128.00 -2.21 -34.05 16 8 O -0.98 -29.44 16.75 -128.00 -2.14 -31.58 16 9 C -0.70 -20.66 5.95 22.27 0.13 -20.52 16 10 C -0.02 -0.53 9.52 22.27 0.21 -0.32 16 11 C -0.15 -5.50 9.70 22.27 0.22 -5.28 16 12 C 0.00 -0.11 5.07 -19.87 -0.10 -0.21 16 13 C 0.05 2.45 5.10 29.10 0.15 2.60 16 14 C -0.53 -29.55 9.09 25.60 0.23 -29.32 16 15 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 16 C 0.01 0.56 5.46 84.65 0.46 1.02 16 17 N -0.92 -53.89 13.29 21.45 0.28 -53.60 16 18 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 C -0.16 -5.80 9.70 22.27 0.22 -5.59 16 23 C -0.02 -0.64 9.52 22.27 0.21 -0.43 16 24 C 0.03 0.37 7.55 63.85 0.48 0.85 16 25 O -0.39 -6.72 10.58 -148.98 -1.58 -8.29 16 26 C 0.02 0.28 7.08 63.85 0.45 0.73 16 27 H 0.06 0.32 6.19 -2.39 -0.01 0.31 16 28 H 0.06 0.35 6.10 -2.38 -0.01 0.33 16 29 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.09 1.30 7.75 -2.38 -0.02 1.28 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.43 8.06 5.79 -96.75 -0.56 7.50 16 35 H 0.16 3.79 7.61 -2.91 -0.02 3.76 16 36 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 37 H 0.02 0.82 8.08 -2.39 -0.02 0.81 16 38 H 0.01 0.68 8.09 -2.39 -0.02 0.66 16 39 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 40 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 41 H 0.15 4.09 7.62 -2.91 -0.02 4.07 16 42 H 0.08 1.12 8.13 -2.38 -0.02 1.10 16 43 H 0.11 0.88 5.96 -2.39 -0.01 0.87 16 44 H 0.11 0.91 5.62 -2.39 -0.01 0.89 16 45 H 0.09 1.09 8.04 -2.39 -0.02 1.07 16 Total: -1.00 -71.49 375.84 -0.61 -72.10 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.45 Total: 17.13 kcal Atomic # 6 Polarization: -60.39 SS G_CDS: 3.92 Total: -56.46 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -0.75 Total: -75.99 kcal Atomic # 8 Polarization: -67.99 SS G_CDS: -5.93 Total: -73.92 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 71.89 SS G_CDS: -0.32 Total: 71.57 kcal Total: -71.49 -0.61 -72.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885222061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.423 kcal (2) G-P(sol) polarization free energy of solvation -71.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds