Wall clock time and date at job start Sat Apr 11 2020 05:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99943 * 2 1 4 4 C 1.53009 * 109.46958 * 125.00137 * 3 2 1 5 5 C 1.52999 * 109.47170 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47068 * 305.00403 * 5 4 3 7 7 C 1.52991 * 109.47417 * 185.00032 * 5 4 3 8 8 O 1.42906 * 109.47154 * 305.00022 * 7 5 4 9 9 N 1.46506 * 109.46972 * 65.00002 * 5 4 3 10 10 S 1.65596 * 119.99651 * 215.00014 * 9 5 4 11 11 O 1.42102 * 106.40754 * 311.46052 * 10 9 5 12 12 O 1.42109 * 106.39910 * 178.54094 * 10 9 5 13 13 C 1.76199 * 107.22174 * 65.00135 * 10 9 5 14 14 C 1.38238 * 119.99900 * 89.99763 * 13 10 9 15 15 C 1.38235 * 120.00108 * 180.02562 * 14 13 10 16 16 C 1.38243 * 119.99617 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99586 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47001 * 89.99822 * 17 16 15 19 19 H 1.08005 * 119.99817 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00081 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99848 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00321 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46855 * 90.00279 * 22 20 18 24 24 H 1.48499 * 109.47326 * 210.00609 * 22 20 18 25 25 H 1.48497 * 109.46885 * 330.00481 * 22 20 18 26 26 C 1.38233 * 120.00248 * 0.25361 * 16 15 14 27 27 C 1.38234 * 120.00018 * 269.97659 * 13 10 9 28 28 H 1.07993 * 120.00058 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99679 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.00025 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47409 * 5.00441 * 3 2 1 32 32 H 1.08998 * 109.47089 * 244.99963 * 3 2 1 33 33 H 1.09001 * 109.46812 * 59.99938 * 4 3 2 34 34 H 1.08998 * 109.47079 * 299.99833 * 4 3 2 35 35 H 1.08999 * 109.47176 * 64.99611 * 7 5 4 36 36 H 1.08996 * 109.47604 * 184.99832 * 7 5 4 37 37 H 0.96699 * 114.00253 * 179.97438 * 8 7 5 38 38 H 0.96996 * 120.00109 * 35.00181 * 9 5 4 39 39 H 1.08000 * 120.00578 * 359.97438 * 14 13 10 40 40 H 1.07999 * 120.00165 * 179.97438 * 15 14 13 41 41 H 1.09000 * 109.46646 * 209.99280 * 17 16 15 42 42 H 1.09000 * 109.47248 * 329.99998 * 17 16 15 43 43 H 0.96998 * 119.99944 * 179.97438 * 21 20 18 44 44 H 1.08004 * 119.99934 * 179.72684 * 26 16 15 45 45 H 1.07999 * 120.00024 * 0.02562 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.8006 2.6578 1.1814 6 1 4.2867 2.7963 0.2156 7 6 4.8585 2.6358 2.2863 8 8 4.2348 2.3385 3.5372 9 7 2.8671 3.7612 1.4210 10 16 3.1039 5.2221 0.6780 11 8 4.4686 5.5605 0.8839 12 8 2.0268 6.0567 1.0815 13 6 2.9113 4.9637 -1.0542 14 6 1.6662 5.1000 -1.6392 15 6 1.5150 4.8968 -2.9981 16 6 2.6088 4.5568 -3.7720 17 6 2.4438 4.3347 -5.2535 18 6 2.6501 5.6373 -5.9827 19 1 2.8775 6.5361 -5.4288 20 6 2.5486 5.6815 -7.3570 21 7 2.2711 4.5870 -8.0314 22 14 2.8036 7.2962 -8.2609 23 1 4.2390 7.4464 -8.6105 24 1 1.9884 7.3028 -9.5022 25 1 2.3860 8.4231 -7.3886 26 6 3.8528 4.4148 -3.1862 27 6 4.0054 4.6252 -1.8284 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5400 0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 3.7400 0.5065 1.0920 34 1 2.4773 1.2355 2.1131 35 1 5.6032 1.8724 2.0612 36 1 5.3434 3.6102 2.3446 37 1 4.8474 2.3078 4.2847 38 1 2.1104 3.6360 2.0147 39 1 0.8114 5.3645 -1.0344 40 1 0.5422 5.0029 -3.4550 41 1 3.1790 3.6063 -5.5957 42 1 1.4402 3.9604 -5.4552 43 1 2.1993 4.6182 -8.9983 44 1 4.7065 4.1448 -3.7901 45 1 4.9781 4.5186 -1.3714 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885224831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:28 Heat of formation + Delta-G solvation = -124.978649 kcal Electronic energy + Delta-G solvation = -27565.732425 eV Core-core repulsion = 23673.863279 eV Total energy + Delta-G solvation = -3891.869147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.23597 -39.18271 -38.26241 -36.96219 -36.64736 -35.59443 -35.15434 -33.31350 -31.95469 -31.45335 -29.24432 -28.81287 -25.59058 -24.52095 -23.74311 -22.47147 -21.98518 -20.63169 -20.57842 -19.11686 -18.61994 -18.45588 -17.97536 -17.29496 -16.85361 -16.49471 -16.24694 -15.98669 -15.71301 -15.52106 -15.21407 -14.86004 -14.62115 -14.53808 -14.43087 -13.94809 -13.92439 -13.66358 -13.40496 -13.39852 -13.22280 -13.15098 -12.77532 -12.71944 -12.67351 -12.60864 -12.25344 -12.13284 -12.02886 -11.74079 -11.69919 -11.67393 -11.39764 -10.76217 -10.65379 -10.48375 -10.11338 -9.94740 -9.93514 -8.27207 -6.39870 -0.62096 -0.05399 0.41058 1.38120 1.38632 1.46640 1.49938 2.01928 2.34765 2.57388 2.83296 3.05543 3.32353 3.46416 3.68797 3.88399 3.97649 4.05347 4.15012 4.17016 4.24318 4.41410 4.47777 4.49248 4.54244 4.61486 4.67477 4.82427 4.90159 4.91495 4.92077 4.99429 5.10518 5.11745 5.25758 5.26639 5.34587 5.36103 5.47373 5.67202 5.81404 5.87621 5.93183 5.96106 6.10142 6.11278 6.72121 6.99951 7.29317 8.82802 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.003184 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.835608 B = 8792.589232 C = 9910.659200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.104 4.104 4 C -0.101 4.101 5 C 0.146 3.854 6 H 0.103 0.897 7 C 0.057 3.943 8 O -0.580 6.580 9 N -1.093 6.093 10 S 2.721 3.279 11 O -0.979 6.979 12 O -0.990 6.990 13 C -0.698 4.698 14 C -0.018 4.018 15 C -0.154 4.154 16 C -0.001 4.001 17 C 0.049 3.951 18 C -0.534 4.534 19 H 0.053 0.947 20 C 0.010 3.990 21 N -0.925 5.925 22 Si 0.963 3.037 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.268 1.268 26 C -0.151 4.151 27 C -0.018 4.018 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.394 0.606 38 H 0.427 0.573 39 H 0.150 0.850 40 H 0.126 0.874 41 H 0.014 0.986 42 H 0.011 0.989 43 H 0.267 0.733 44 H 0.131 0.869 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.416 -9.033 22.474 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.174 4.174 3 C -0.141 4.141 4 C -0.140 4.140 5 C 0.039 3.961 6 H 0.121 0.879 7 C -0.023 4.023 8 O -0.388 6.388 9 N -0.855 5.855 10 S 2.811 3.189 11 O -0.969 6.969 12 O -0.981 6.981 13 C -0.785 4.785 14 C -0.037 4.037 15 C -0.173 4.173 16 C -0.002 4.002 17 C 0.012 3.988 18 C -0.571 4.571 19 H 0.072 0.928 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.787 3.213 23 H -0.196 1.196 24 H -0.204 1.204 25 H -0.193 1.193 26 C -0.170 4.170 27 C -0.037 4.037 28 H 0.123 0.877 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.244 0.756 38 H 0.265 0.735 39 H 0.168 0.832 40 H 0.144 0.856 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.076 0.924 44 H 0.149 0.851 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.205 -8.303 22.223 23.939 hybrid contribution -0.104 0.311 -1.305 1.345 sum 3.101 -7.992 20.919 22.607 Atomic orbital electron populations 1.23995 0.96351 1.02152 1.01814 1.23073 0.96127 0.98826 0.99326 1.20862 0.98764 0.95523 0.98933 1.21628 0.98271 0.95533 0.98565 1.21195 0.89522 0.87196 0.98162 0.87890 1.22757 0.94397 1.00660 0.84478 1.86410 1.40141 1.94231 1.18002 1.55269 1.40008 1.29299 1.60940 1.00915 0.72673 0.72518 0.72806 1.93535 1.35785 1.82400 1.85191 1.93535 1.56659 1.65693 1.82171 1.30742 1.00568 1.21272 1.25945 1.20956 0.95997 0.91941 0.94778 1.21263 0.99260 1.02688 0.94088 1.20794 0.93881 0.89010 0.96484 1.18256 0.96686 0.96579 0.87303 1.21296 1.49037 0.94809 0.92003 0.92823 1.25850 0.94488 1.00108 0.98448 1.70055 1.49049 1.29356 1.07988 0.85473 0.78528 0.79326 0.77924 1.19582 1.20398 1.19301 1.21296 0.97211 1.03159 0.95360 1.21043 0.97744 0.91641 0.93313 0.87745 0.89004 0.86378 0.91771 0.91503 0.89067 0.90281 0.90305 0.93045 0.75632 0.73545 0.83196 0.85635 0.96737 0.97055 0.92395 0.85090 0.82335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.65 14.32 67.78 0.97 -2.68 16 2 C -0.16 -2.67 9.52 25.64 0.24 -2.42 16 3 C -0.10 -1.79 5.54 29.85 0.17 -1.63 16 4 C -0.10 -1.38 4.51 30.60 0.14 -1.24 16 5 C 0.15 2.21 2.57 44.99 0.12 2.33 16 6 H 0.10 1.46 7.23 -2.39 -0.02 1.45 16 7 C 0.06 0.74 6.88 71.98 0.50 1.24 16 8 O -0.58 -7.32 12.83 -148.98 -1.91 -9.23 16 9 N -1.09 -19.51 4.87 -169.39 -0.83 -20.33 16 10 S 2.72 68.16 5.65 -56.49 -0.32 67.84 16 11 O -0.98 -27.91 16.49 -128.00 -2.11 -30.02 16 12 O -0.99 -30.31 17.28 -128.00 -2.21 -32.52 16 13 C -0.70 -19.91 5.82 22.27 0.13 -19.78 16 14 C -0.02 -0.54 9.52 22.27 0.21 -0.33 16 15 C -0.15 -5.69 9.70 22.27 0.22 -5.47 16 16 C 0.00 -0.06 5.07 -19.86 -0.10 -0.16 16 17 C 0.05 2.47 5.11 29.10 0.15 2.62 16 18 C -0.53 -29.55 9.09 25.60 0.23 -29.31 16 19 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 20 C 0.01 0.56 5.46 84.65 0.46 1.02 16 21 N -0.93 -54.01 13.29 21.45 0.28 -53.73 16 22 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 C -0.15 -5.37 9.70 22.27 0.22 -5.16 16 27 C -0.02 -0.53 8.90 22.27 0.20 -0.34 16 28 H 0.10 1.59 8.06 -2.91 -0.02 1.56 16 29 H 0.09 1.67 7.84 -2.91 -0.02 1.65 16 30 H 0.12 1.71 8.06 -2.91 -0.02 1.68 16 31 H 0.06 1.19 7.40 -2.39 -0.02 1.17 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.14 7.73 -2.39 -0.02 1.12 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16 36 H 0.05 0.81 7.59 -2.39 -0.02 0.79 16 37 H 0.39 1.89 9.12 -74.06 -0.68 1.21 16 38 H 0.43 6.55 8.84 -96.75 -0.85 5.69 16 39 H 0.15 3.95 7.62 -2.91 -0.02 3.93 16 40 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 41 H 0.01 0.77 8.08 -2.39 -0.02 0.75 16 42 H 0.01 0.60 8.09 -2.39 -0.02 0.58 16 43 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 44 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 45 H 0.16 3.62 7.62 -2.91 -0.02 3.60 16 Total: -1.00 -71.96 392.84 -1.76 -73.71 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -0.53 Total: 20.08 kcal Atomic # 6 Polarization: -65.15 SS G_CDS: 3.84 Total: -61.31 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -0.54 Total: -74.06 kcal Atomic # 8 Polarization: -65.54 SS G_CDS: -6.23 Total: -71.77 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 68.16 SS G_CDS: -0.32 Total: 67.84 kcal Total: -71.96 -1.76 -73.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885224831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.268 kcal (2) G-P(sol) polarization free energy of solvation -71.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds