Wall clock time and date at job start Sat Apr 11 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.87111 * 2 1 4 4 C 1.54100 * 109.87905 * 121.00541 * 2 1 3 5 5 C 1.54810 * 104.18526 * 117.39504 * 4 2 1 6 6 H 1.09003 * 110.90603 * 220.88618 * 5 4 2 7 7 N 1.46501 * 110.90915 * 97.31901 * 5 4 2 8 8 S 1.65603 * 120.00336 * 144.99880 * 7 5 4 9 9 O 1.42105 * 106.39654 * 311.46248 * 8 7 5 10 10 O 1.42098 * 106.40042 * 178.54210 * 8 7 5 11 11 C 1.76198 * 107.21677 * 64.99824 * 8 7 5 12 12 C 1.38241 * 119.99532 * 90.00263 * 11 8 7 13 13 C 1.38239 * 119.99424 * 179.97438 * 12 11 8 14 14 C 1.38231 * 120.00344 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00160 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47166 * 90.00049 * 15 14 13 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.38237 * 120.00067 * 0.27624 * 14 13 12 25 25 C 1.38232 * 120.00410 * 270.02411 * 11 8 7 26 26 C 1.54994 * 102.09575 * 339.12202 * 5 4 2 27 27 O 1.43744 * 109.88208 * 238.84072 * 2 1 3 28 28 H 1.09002 * 109.47274 * 298.99583 * 1 2 3 29 29 H 1.09003 * 109.47057 * 58.99009 * 1 2 3 30 30 H 1.09000 * 109.47145 * 178.99413 * 1 2 3 31 31 H 1.09000 * 109.47332 * 181.00329 * 3 2 1 32 32 H 1.08998 * 109.47067 * 301.00887 * 3 2 1 33 33 H 1.09002 * 109.46889 * 61.00352 * 3 2 1 34 34 H 1.08997 * 110.48983 * 358.72121 * 4 2 1 35 35 H 1.09000 * 110.48833 * 236.06827 * 4 2 1 36 36 H 0.97000 * 119.99672 * 325.00228 * 7 5 4 37 37 H 1.07994 * 119.99976 * 0.02562 * 12 11 8 38 38 H 1.08003 * 119.99332 * 180.02562 * 13 12 11 39 39 H 1.09007 * 109.46871 * 329.99783 * 15 14 13 40 40 H 1.09003 * 109.46889 * 210.00537 * 15 14 13 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.00430 * 179.72613 * 24 14 13 43 43 H 1.08005 * 119.99924 * 0.02562 * 25 11 8 44 44 H 1.08996 * 110.62107 * 155.52798 * 26 5 4 45 45 H 1.09001 * 110.61782 * 278.52230 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 6 2.0540 -0.7465 1.2421 5 6 2.8324 -1.9515 0.6602 6 1 2.6437 -2.8540 1.2417 7 7 4.2677 -1.6648 0.5957 8 16 5.3666 -2.8742 0.8644 9 8 4.9580 -3.5298 2.0572 10 8 6.6523 -2.2922 0.6986 11 6 5.1797 -4.0473 -0.4370 12 6 5.9180 -3.9147 -1.5982 13 6 5.7718 -4.8353 -2.6191 14 6 4.8879 -5.8887 -2.4785 15 6 4.7289 -6.8926 -3.5911 16 6 5.7101 -8.0194 -3.3949 17 1 6.3814 -8.0099 -2.5489 18 6 5.7509 -9.0627 -4.2955 19 7 4.9331 -9.0746 -5.3254 20 14 6.9677 -10.4591 -4.0527 21 1 8.2384 -10.1351 -4.7495 22 1 7.2305 -10.6401 -2.6024 23 1 6.4013 -11.7122 -4.6133 24 6 4.1458 -6.0184 -1.3194 25 6 4.2947 -5.0999 -0.2971 26 6 2.2281 -2.0724 -0.7619 27 8 2.0188 -0.6994 -1.1567 28 1 -0.3634 0.4982 0.8989 29 1 -0.3633 0.5295 -0.8808 30 1 -0.3633 -1.0275 -0.0180 31 1 3.1399 1.4314 -0.0180 32 1 1.6756 1.9606 -0.8808 33 1 1.7050 1.9499 0.8989 34 1 1.2238 -1.0906 1.8589 35 1 2.7197 -0.1054 1.8199 36 1 4.5743 -0.7666 0.3956 37 1 6.6095 -3.0924 -1.7075 38 1 6.3489 -4.7319 -3.5261 39 1 4.9195 -6.4073 -4.5483 40 1 3.7136 -7.2889 -3.5805 41 1 4.9621 -9.8084 -5.9592 42 1 3.4520 -6.8389 -1.2113 43 1 3.7174 -5.2030 0.6099 44 1 2.9295 -2.5631 -1.4366 45 1 1.2814 -2.6118 -0.7321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885285620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:34 Heat of formation + Delta-G solvation = -110.523284 kcal Electronic energy + Delta-G solvation = -27675.589808 eV Core-core repulsion = 23784.347493 eV Total energy + Delta-G solvation = -3891.242315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.31326 -38.83836 -37.19265 -35.81803 -35.07775 -33.70162 -33.39281 -31.58409 -30.61244 -29.84910 -27.72403 -27.46159 -26.13731 -23.74419 -22.42698 -21.92828 -20.93788 -20.40467 -19.58878 -18.01525 -17.46188 -16.87999 -16.45663 -15.98762 -15.67041 -15.29858 -15.12625 -14.81574 -14.39497 -14.32474 -14.05987 -13.82090 -13.67765 -13.14390 -12.92773 -12.83255 -12.69493 -12.52146 -12.25269 -12.10627 -12.01854 -11.99492 -11.83440 -11.75709 -11.72677 -11.50567 -11.39383 -10.99980 -10.93514 -10.93184 -10.56639 -10.50573 -10.22335 -9.77327 -9.67561 -9.47583 -8.62330 -8.55275 -8.41280 -6.18518 -4.23601 0.44639 1.28781 1.76245 2.96855 3.23447 3.30078 3.34262 3.53390 3.73016 4.06506 4.10029 4.34513 4.36738 4.47353 4.49472 4.66689 4.72998 4.93554 5.00811 5.14938 5.19650 5.22282 5.23564 5.26965 5.35559 5.44368 5.50803 5.55153 5.63726 5.69588 5.75601 5.82746 5.85468 5.88335 5.94016 6.21455 6.29616 6.47448 6.71370 6.76441 6.81133 6.88561 7.27033 7.40424 7.56919 7.76532 8.11585 8.81204 9.41476 10.91501 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017088 B = 0.002888 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.144820 B = 9691.866709 C =10636.160961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 C -0.144 4.144 4 C -0.151 4.151 5 C 0.117 3.883 6 H 0.113 0.887 7 N -1.106 6.106 8 S 2.696 3.304 9 O -0.964 6.964 10 O -0.964 6.964 11 C -0.705 4.705 12 C -0.020 4.020 13 C -0.145 4.145 14 C 0.028 3.972 15 C 0.039 3.961 16 C -0.518 4.518 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.272 1.272 23 H -0.285 1.285 24 C -0.145 4.145 25 C -0.026 4.026 26 C 0.028 3.972 27 O -0.360 6.360 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.418 0.582 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.264 0.736 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.104 0.896 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 19.159 11.989 24.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.053 3.947 3 C -0.201 4.201 4 C -0.190 4.190 5 C 0.009 3.991 6 H 0.131 0.869 7 N -0.864 5.864 8 S 2.789 3.211 9 O -0.954 6.954 10 O -0.954 6.954 11 C -0.795 4.795 12 C -0.039 4.039 13 C -0.164 4.164 14 C 0.028 3.972 15 C 0.002 3.998 16 C -0.556 4.556 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.529 5.529 20 Si 0.726 3.274 21 H -0.204 1.204 22 H -0.197 1.197 23 H -0.210 1.210 24 C -0.164 4.164 25 C -0.046 4.046 26 C -0.050 4.050 27 O -0.279 6.279 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.253 0.747 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.122 0.878 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.106 18.935 12.389 24.036 hybrid contribution 0.443 -0.958 -0.613 1.221 sum -7.663 17.977 11.775 22.816 Atomic orbital electron populations 1.22267 0.94756 1.02631 1.02488 1.22155 0.93786 0.93379 0.85381 1.21910 1.01794 0.93960 1.02440 1.23376 1.00686 0.96896 0.98068 1.22279 0.80185 0.99570 0.97094 0.86945 1.55580 1.16482 1.25272 1.89037 1.01626 0.72405 0.72950 0.74114 1.93563 1.82843 1.75241 1.43760 1.93573 1.37503 1.77313 1.87042 1.30291 1.13267 1.18038 1.17883 1.20772 0.94382 0.97721 0.91041 1.21257 1.00158 0.95364 0.99577 1.21121 0.88386 0.92075 0.95633 1.18542 0.98555 0.91744 0.90923 1.20966 1.19304 1.04840 1.10490 0.92291 1.25004 0.95904 0.98257 0.94964 1.69947 1.37183 1.32520 1.13291 0.86480 0.81066 0.81267 0.78604 1.20440 1.19696 1.21020 1.21238 1.01808 0.99593 0.93715 1.20763 0.93920 0.92051 0.97847 1.24164 1.00618 0.84641 0.95589 1.88956 1.85915 1.20411 1.32650 0.91622 0.91809 0.92093 0.91832 0.91820 0.91326 0.89089 0.89203 0.74741 0.85244 0.85330 0.94703 0.94698 0.92613 0.85336 0.85359 0.87786 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 8.61 37.16 0.32 -0.77 16 2 C 0.09 0.72 1.19 -90.04 -0.11 0.61 16 3 C -0.14 -0.96 8.67 37.16 0.32 -0.64 16 4 C -0.15 -1.04 5.97 -25.20 -0.15 -1.20 16 5 C 0.12 1.02 3.80 -65.92 -0.25 0.77 16 6 H 0.11 0.91 7.59 -51.93 -0.39 0.52 16 7 N -1.11 -10.74 5.55 -3.19 -0.02 -10.76 16 8 S 2.70 35.84 5.72 -107.50 -0.61 35.23 16 9 O -0.96 -14.82 16.68 -57.17 -0.95 -15.77 16 10 O -0.96 -15.27 17.28 -57.17 -0.99 -16.25 16 11 C -0.71 -10.59 5.84 -39.58 -0.23 -10.82 16 12 C -0.02 -0.31 9.52 -39.58 -0.38 -0.69 16 13 C -0.14 -2.63 9.70 -39.58 -0.38 -3.02 16 14 C 0.03 0.57 5.07 -104.63 -0.53 0.04 16 15 C 0.04 0.94 5.10 -29.04 -0.15 0.80 16 16 C -0.52 -13.94 9.09 -34.44 -0.31 -14.25 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 20 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.14 -2.56 9.70 -39.58 -0.38 -2.95 16 25 C -0.03 -0.40 9.52 -39.58 -0.38 -0.78 16 26 C 0.03 0.27 7.35 38.21 0.28 0.56 16 27 O -0.36 -3.82 10.86 -35.23 -0.38 -4.21 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.50 7.70 -51.93 -0.40 0.10 16 35 H 0.09 0.56 7.62 -51.93 -0.40 0.16 16 36 H 0.42 3.40 8.89 -34.47 -0.31 3.10 16 37 H 0.13 1.80 7.62 -52.49 -0.40 1.41 16 38 H 0.13 2.25 8.06 -52.48 -0.42 1.82 16 39 H 0.03 0.88 8.09 -51.92 -0.42 0.46 16 40 H 0.03 0.87 8.08 -51.93 -0.42 0.46 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 43 H 0.13 1.64 7.62 -52.48 -0.40 1.24 16 44 H 0.10 1.14 8.03 -51.93 -0.42 0.72 16 45 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 LS Contribution 385.17 15.07 5.80 5.80 Total: -1.00 -33.02 385.17 -10.76 -43.78 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.89 Total: 1.60 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: -2.43 Total: -30.77 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.72 Total: -35.43 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -2.32 Total: -36.23 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 35.84 SS G_CDS: -0.61 Total: 35.23 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.02 -10.76 -43.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885285620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.745 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds