Wall clock time and date at job start Sat Apr 11 2020 05:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.87111 * 2 1 4 4 C 1.54100 * 109.87905 * 121.00541 * 2 1 3 5 5 C 1.54810 * 104.18526 * 117.39504 * 4 2 1 6 6 H 1.09003 * 110.90603 * 220.88618 * 5 4 2 7 7 N 1.46501 * 110.90915 * 97.31901 * 5 4 2 8 8 S 1.65603 * 120.00336 * 144.99880 * 7 5 4 9 9 O 1.42105 * 106.39654 * 311.46248 * 8 7 5 10 10 O 1.42098 * 106.40042 * 178.54210 * 8 7 5 11 11 C 1.76198 * 107.21677 * 64.99824 * 8 7 5 12 12 C 1.38241 * 119.99532 * 90.00263 * 11 8 7 13 13 C 1.38239 * 119.99424 * 179.97438 * 12 11 8 14 14 C 1.38231 * 120.00344 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00160 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47166 * 90.00049 * 15 14 13 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.38237 * 120.00067 * 0.27624 * 14 13 12 25 25 C 1.38232 * 120.00410 * 270.02411 * 11 8 7 26 26 C 1.54994 * 102.09575 * 339.12202 * 5 4 2 27 27 O 1.43744 * 109.88208 * 238.84072 * 2 1 3 28 28 H 1.09002 * 109.47274 * 298.99583 * 1 2 3 29 29 H 1.09003 * 109.47057 * 58.99009 * 1 2 3 30 30 H 1.09000 * 109.47145 * 178.99413 * 1 2 3 31 31 H 1.09000 * 109.47332 * 181.00329 * 3 2 1 32 32 H 1.08998 * 109.47067 * 301.00887 * 3 2 1 33 33 H 1.09002 * 109.46889 * 61.00352 * 3 2 1 34 34 H 1.08997 * 110.48983 * 358.72121 * 4 2 1 35 35 H 1.09000 * 110.48833 * 236.06827 * 4 2 1 36 36 H 0.97000 * 119.99672 * 325.00228 * 7 5 4 37 37 H 1.07994 * 119.99976 * 0.02562 * 12 11 8 38 38 H 1.08003 * 119.99332 * 180.02562 * 13 12 11 39 39 H 1.09007 * 109.46871 * 329.99783 * 15 14 13 40 40 H 1.09003 * 109.46889 * 210.00537 * 15 14 13 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.00430 * 179.72613 * 24 14 13 43 43 H 1.08005 * 119.99924 * 0.02562 * 25 11 8 44 44 H 1.08996 * 110.62107 * 155.52798 * 26 5 4 45 45 H 1.09001 * 110.61782 * 278.52230 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 6 2.0540 -0.7465 1.2421 5 6 2.8324 -1.9515 0.6602 6 1 2.6437 -2.8540 1.2417 7 7 4.2677 -1.6648 0.5957 8 16 5.3666 -2.8742 0.8644 9 8 4.9580 -3.5298 2.0572 10 8 6.6523 -2.2922 0.6986 11 6 5.1797 -4.0473 -0.4370 12 6 5.9180 -3.9147 -1.5982 13 6 5.7718 -4.8353 -2.6191 14 6 4.8879 -5.8887 -2.4785 15 6 4.7289 -6.8926 -3.5911 16 6 5.7101 -8.0194 -3.3949 17 1 6.3814 -8.0099 -2.5489 18 6 5.7509 -9.0627 -4.2955 19 7 4.9331 -9.0746 -5.3254 20 14 6.9677 -10.4591 -4.0527 21 1 8.2384 -10.1351 -4.7495 22 1 7.2305 -10.6401 -2.6024 23 1 6.4013 -11.7122 -4.6133 24 6 4.1458 -6.0184 -1.3194 25 6 4.2947 -5.0999 -0.2971 26 6 2.2281 -2.0724 -0.7619 27 8 2.0188 -0.6994 -1.1567 28 1 -0.3634 0.4982 0.8989 29 1 -0.3633 0.5295 -0.8808 30 1 -0.3633 -1.0275 -0.0180 31 1 3.1399 1.4314 -0.0180 32 1 1.6756 1.9606 -0.8808 33 1 1.7050 1.9499 0.8989 34 1 1.2238 -1.0906 1.8589 35 1 2.7197 -0.1054 1.8199 36 1 4.5743 -0.7666 0.3956 37 1 6.6095 -3.0924 -1.7075 38 1 6.3489 -4.7319 -3.5261 39 1 4.9195 -6.4073 -4.5483 40 1 3.7136 -7.2889 -3.5805 41 1 4.9621 -9.8084 -5.9592 42 1 3.4520 -6.8389 -1.2113 43 1 3.7174 -5.2030 0.6099 44 1 2.9295 -2.5631 -1.4366 45 1 1.2814 -2.6118 -0.7321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885285620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:33 Heat of formation + Delta-G solvation = -132.769795 kcal Electronic energy + Delta-G solvation = -27676.554489 eV Core-core repulsion = 23784.347493 eV Total energy + Delta-G solvation = -3892.206996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.96987 -40.22680 -38.36448 -36.99583 -35.86369 -35.58862 -34.00537 -33.31852 -31.95690 -30.56494 -29.25365 -28.22097 -26.76346 -25.58760 -23.74776 -22.67391 -22.46981 -21.01119 -20.61247 -19.12667 -18.61970 -18.46901 -17.72784 -16.87940 -16.75250 -16.62659 -16.11596 -15.98374 -15.79064 -15.34073 -15.22193 -14.63694 -14.60411 -14.45318 -14.28384 -13.95733 -13.54444 -13.42961 -13.41060 -13.37981 -13.23419 -13.18613 -13.06767 -12.69382 -12.67954 -12.65678 -12.45500 -12.38443 -12.15607 -12.03564 -11.99866 -11.67788 -11.52254 -11.42914 -10.95188 -10.65961 -10.25319 -9.95513 -9.93875 -8.27647 -6.40360 -0.65202 -0.06347 0.40660 1.37960 1.38219 1.49684 1.95543 2.34179 2.55166 2.81566 2.92400 3.05091 3.28450 3.48640 3.79333 3.87481 3.95079 3.98525 4.05423 4.13444 4.16728 4.30158 4.35372 4.48268 4.50245 4.67749 4.78174 4.81966 4.82065 4.84600 4.91475 4.98851 4.99865 5.04225 5.10758 5.21340 5.25255 5.26115 5.33382 5.34142 5.43371 5.66734 5.87032 5.92627 6.02347 6.09603 6.09715 6.71684 7.28791 8.82443 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017088 B = 0.002888 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.144820 B = 9691.866709 C =10636.160961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.084 3.916 3 C -0.145 4.145 4 C -0.145 4.145 5 C 0.110 3.890 6 H 0.124 0.876 7 N -1.091 6.091 8 S 2.726 3.274 9 O -0.977 6.977 10 O -0.986 6.986 11 C -0.701 4.701 12 C -0.018 4.018 13 C -0.156 4.156 14 C -0.002 4.002 15 C 0.048 3.952 16 C -0.534 4.534 17 H 0.054 0.946 18 C 0.009 3.991 19 N -0.926 5.926 20 Si 0.964 3.036 21 H -0.272 1.272 22 H -0.267 1.267 23 H -0.278 1.278 24 C -0.152 4.152 25 C -0.017 4.017 26 C 0.024 3.976 27 O -0.385 6.385 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.428 0.572 37 H 0.151 0.849 38 H 0.126 0.874 39 H 0.011 0.989 40 H 0.014 0.986 41 H 0.267 0.733 42 H 0.131 0.869 43 H 0.160 0.840 44 H 0.086 0.914 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 20.343 14.557 26.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 C -0.202 4.202 4 C -0.184 4.184 5 C 0.002 3.998 6 H 0.142 0.858 7 N -0.852 5.852 8 S 2.816 3.184 9 O -0.967 6.967 10 O -0.976 6.976 11 C -0.788 4.788 12 C -0.037 4.037 13 C -0.175 4.175 14 C -0.002 4.002 15 C 0.011 3.989 16 C -0.571 4.571 17 H 0.072 0.928 18 C -0.190 4.190 19 N -0.565 5.565 20 Si 0.788 3.212 21 H -0.198 1.198 22 H -0.191 1.191 23 H -0.203 1.203 24 C -0.171 4.171 25 C -0.036 4.036 26 C -0.054 4.054 27 O -0.305 6.305 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.265 0.735 37 H 0.169 0.831 38 H 0.144 0.856 39 H 0.029 0.971 40 H 0.033 0.967 41 H 0.076 0.924 42 H 0.149 0.851 43 H 0.178 0.822 44 H 0.104 0.896 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.236 20.118 14.940 26.377 hybrid contribution 0.410 -1.175 -1.367 1.849 sum -7.826 18.943 13.573 24.583 Atomic orbital electron populations 1.22270 0.94033 1.02701 1.03034 1.22382 0.94441 0.93692 0.84939 1.21953 1.01664 0.93495 1.03096 1.23416 1.01209 0.95992 0.97812 1.22509 0.79256 1.01160 0.96858 0.85796 1.55266 1.16625 1.24721 1.88606 1.00793 0.72014 0.72531 0.73080 1.93547 1.83129 1.75977 1.44070 1.93543 1.39438 1.77527 1.87120 1.30765 1.11855 1.18292 1.17889 1.20978 0.94605 0.97531 0.90612 1.21276 1.00109 0.95636 1.00455 1.20800 0.91142 0.92614 0.95653 1.18260 0.96785 0.92176 0.91661 1.21295 1.19660 1.05919 1.10259 0.92781 1.25866 0.97641 1.00811 0.94636 1.70057 1.38778 1.33492 1.14161 0.85466 0.78822 0.78211 0.78706 1.19771 1.19147 1.20299 1.21300 1.01671 1.00486 0.93616 1.21045 0.93651 0.90914 0.97999 1.24181 1.00899 0.84573 0.95742 1.88938 1.86296 1.20870 1.34392 0.89671 0.92761 0.92205 0.92048 0.92659 0.89287 0.87035 0.88033 0.73533 0.83113 0.85630 0.97103 0.96723 0.92384 0.85060 0.82233 0.89583 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 8.61 71.98 0.62 -1.20 16 2 C 0.08 1.12 1.19 -10.42 -0.01 1.11 16 3 C -0.14 -1.63 8.67 71.98 0.62 -1.00 16 4 C -0.15 -1.52 5.97 31.58 0.19 -1.33 16 5 C 0.11 1.61 3.80 46.29 0.18 1.79 16 6 H 0.12 1.58 7.59 -2.39 -0.02 1.56 16 7 N -1.09 -18.29 5.55 -163.99 -0.91 -19.20 16 8 S 2.73 65.61 5.72 -56.49 -0.32 65.29 16 9 O -0.98 -27.04 16.68 -128.00 -2.14 -29.18 16 10 O -0.99 -28.98 17.28 -128.00 -2.21 -31.20 16 11 C -0.70 -19.86 5.84 22.27 0.13 -19.73 16 12 C -0.02 -0.56 9.52 22.27 0.21 -0.35 16 13 C -0.16 -5.80 9.70 22.27 0.22 -5.58 16 14 C 0.00 -0.07 5.07 -19.87 -0.10 -0.17 16 15 C 0.05 2.45 5.10 29.10 0.15 2.60 16 16 C -0.53 -29.64 9.09 25.60 0.23 -29.41 16 17 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 18 C 0.01 0.53 5.46 84.66 0.46 0.99 16 19 N -0.93 -54.27 13.29 21.45 0.28 -53.99 16 20 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 24 C -0.15 -5.40 9.70 22.27 0.22 -5.19 16 25 C -0.02 -0.49 9.52 22.27 0.21 -0.28 16 26 C 0.02 0.44 7.35 72.66 0.53 0.97 16 27 O -0.39 -7.71 10.86 -148.98 -1.62 -9.33 16 28 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.68 8.11 -2.39 -0.02 0.66 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.11 0.75 7.70 -2.39 -0.02 0.73 16 35 H 0.10 0.86 7.62 -2.39 -0.02 0.84 16 36 H 0.43 5.83 8.89 -96.74 -0.86 4.97 16 37 H 0.15 3.98 7.62 -2.91 -0.02 3.96 16 38 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 39 H 0.01 0.58 8.09 -2.38 -0.02 0.56 16 40 H 0.01 0.78 8.08 -2.39 -0.02 0.76 16 41 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 43 H 0.16 3.59 7.62 -2.91 -0.02 3.57 16 44 H 0.09 1.83 8.03 -2.39 -0.02 1.81 16 45 H 0.08 1.28 8.11 -2.39 -0.02 1.26 16 Total: -1.00 -71.81 385.17 -0.90 -72.71 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.13 Total: 16.06 kcal Atomic # 6 Polarization: -60.65 SS G_CDS: 3.86 Total: -56.79 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -0.63 Total: -73.19 kcal Atomic # 8 Polarization: -63.74 SS G_CDS: -5.97 Total: -69.70 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 65.61 SS G_CDS: -0.32 Total: 65.29 kcal Total: -71.81 -0.90 -72.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885285620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.057 kcal (2) G-P(sol) polarization free energy of solvation -71.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds