Wall clock time and date at job start Sat Apr 11 2020 05:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47414 * 2 1 4 4 C 1.53000 * 109.47019 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47321 * 304.99785 * 4 3 2 6 6 N 1.46499 * 109.47475 * 64.99546 * 4 3 2 7 7 C 1.34773 * 120.00380 * 275.00277 * 6 4 3 8 8 O 1.21278 * 119.99594 * 359.97438 * 7 6 4 9 9 C 1.50699 * 119.99986 * 180.02562 * 7 6 4 10 10 S 1.81405 * 109.47068 * 180.02562 * 9 7 6 11 11 O 1.42102 * 108.57513 * 294.48864 * 10 9 7 12 12 O 1.42101 * 108.57738 * 65.50564 * 10 9 7 13 13 C 1.81395 * 101.92376 * 179.97438 * 10 9 7 14 14 C 1.50693 * 109.47314 * 179.97438 * 13 10 9 15 15 H 1.08006 * 119.99745 * 0.02562 * 14 13 10 16 16 C 1.37882 * 120.00330 * 179.97438 * 14 13 10 17 17 N 1.31509 * 119.99520 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00345 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47113 * 89.99822 * 18 16 14 20 20 H 1.48493 * 109.47102 * 210.00409 * 18 16 14 21 21 H 1.48505 * 109.46771 * 329.99943 * 18 16 14 22 22 C 1.50702 * 109.47221 * 185.00151 * 4 3 2 23 23 C 1.38234 * 120.00272 * 99.99373 * 22 4 3 24 24 C 1.38230 * 119.99880 * 179.97438 * 23 22 4 25 25 C 1.38235 * 120.00326 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99464 * 280.02088 * 22 4 3 28 28 H 1.09005 * 109.47134 * 300.00165 * 1 2 3 29 29 H 1.08999 * 109.47227 * 59.99992 * 1 2 3 30 30 H 1.09000 * 109.47625 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47134 * 239.99835 * 2 1 3 32 32 H 1.08999 * 109.47227 * 120.00008 * 2 1 3 33 33 H 1.08999 * 109.47234 * 60.00234 * 3 2 1 34 34 H 1.08996 * 109.46998 * 299.99661 * 3 2 1 35 35 H 0.97007 * 119.99625 * 95.00334 * 6 4 3 36 36 H 1.08998 * 109.46723 * 299.99388 * 9 7 6 37 37 H 1.08989 * 109.47653 * 59.99919 * 9 7 6 38 38 H 1.08998 * 109.47148 * 300.00011 * 13 10 9 39 39 H 1.09002 * 109.46921 * 59.99790 * 13 10 9 40 40 H 0.97004 * 120.00297 * 179.97438 * 17 16 14 41 41 H 1.08001 * 119.99769 * 0.02562 * 23 22 4 42 42 H 1.08000 * 120.00376 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 44 44 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.00481 * 359.97438 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8528 0.8409 6 7 4.0579 0.8587 -1.2527 7 6 4.1865 -0.4779 -1.3680 8 8 3.8987 -1.1975 -0.4352 9 6 4.6888 -1.0782 -2.6558 10 16 4.7490 -2.8843 -2.4981 11 8 5.7243 -3.2212 -1.5211 12 8 3.4219 -3.3702 -2.3497 13 6 5.3674 -3.3826 -4.1289 14 6 5.4851 -4.8839 -4.1843 15 1 5.2145 -5.4789 -3.3245 16 6 5.9373 -5.4981 -5.3330 17 7 6.2663 -4.7736 -6.3800 18 14 6.0825 -7.3591 -5.4020 19 1 4.8057 -7.9375 -5.8924 20 1 7.1833 -7.7359 -6.3246 21 1 6.3739 -7.8835 -4.0435 22 6 4.0725 2.8577 0.1232 23 6 4.4994 3.3350 1.3484 24 6 4.9608 4.6330 1.4618 25 6 4.9959 5.4538 0.3500 26 6 4.5700 4.9762 -0.8753 27 6 4.1061 3.6789 -0.9883 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 4.2884 1.4344 -1.9987 36 1 4.0163 -0.8071 -3.4696 37 1 5.6880 -0.6982 -2.8683 38 1 4.6749 -3.0434 -4.8993 39 1 6.3468 -2.9352 -4.2983 40 1 6.5848 -5.2056 -7.1881 41 1 4.4731 2.6933 2.2167 42 1 5.2947 5.0058 2.4188 43 1 5.3522 6.4694 0.4395 44 1 4.5971 5.6175 -1.7439 45 1 3.7726 3.3061 -1.9454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905264897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:02 Heat of formation + Delta-G solvation = -122.895386 kcal Electronic energy + Delta-G solvation = -27178.711971 eV Core-core repulsion = 23286.933161 eV Total energy + Delta-G solvation = -3891.778810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.53035 -40.00380 -37.76070 -37.20380 -36.75045 -35.38627 -34.80526 -32.85823 -31.81469 -31.22957 -30.83490 -28.93248 -25.63033 -25.17492 -23.72178 -22.30028 -22.20711 -21.38363 -19.69080 -19.10961 -18.56160 -18.09790 -17.41393 -17.26298 -17.08999 -16.70787 -16.37063 -16.06709 -15.97002 -15.65433 -15.33276 -14.92983 -14.62153 -14.45058 -14.25542 -14.20964 -14.00871 -13.71607 -13.64492 -13.38407 -13.29408 -12.90885 -12.84115 -12.71403 -12.66957 -12.59028 -12.53499 -12.22611 -11.97476 -11.90936 -11.76340 -11.61311 -11.57199 -11.31659 -10.92135 -10.75991 -10.29426 -9.82866 -9.66932 -8.40841 -6.55777 -0.81000 0.36421 0.49164 1.32702 1.38482 1.38968 1.51360 1.87882 2.20181 2.33326 2.85902 2.93348 3.04674 3.29181 3.46886 3.54601 3.90161 3.99720 4.03561 4.10965 4.16230 4.20746 4.27569 4.32220 4.40811 4.62224 4.64747 4.67667 4.77091 4.77691 4.79649 4.88854 4.95980 5.05732 5.13113 5.19817 5.25717 5.34169 5.38469 5.48246 5.55401 5.63099 5.65764 5.75912 6.08272 6.24652 6.52670 6.96748 7.14276 8.71553 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018086 B = 0.002618 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.749281 B =10692.083346 C =11526.039299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C -0.113 4.113 4 C 0.183 3.817 5 H 0.078 0.922 6 N -0.697 5.697 7 C 0.536 3.464 8 O -0.565 6.565 9 C -0.648 4.648 10 S 2.433 3.567 11 O -0.987 6.987 12 O -0.983 6.983 13 C -0.420 4.420 14 C -0.565 4.565 15 H 0.056 0.944 16 C 0.029 3.971 17 N -0.905 5.905 18 Si 0.957 3.043 19 H -0.264 1.264 20 H -0.265 1.265 21 H -0.269 1.269 22 C -0.100 4.100 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.120 4.120 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.419 0.581 36 H 0.199 0.801 37 H 0.198 0.802 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.275 0.725 41 H 0.126 0.874 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.960 25.360 8.416 27.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.152 4.152 4 C 0.078 3.922 5 H 0.096 0.904 6 N -0.350 5.350 7 C 0.322 3.678 8 O -0.445 6.445 9 C -0.778 4.778 10 S 2.619 3.381 11 O -0.984 6.984 12 O -0.980 6.980 13 C -0.553 4.553 14 C -0.603 4.603 15 H 0.074 0.926 16 C -0.174 4.174 17 N -0.542 5.542 18 Si 0.780 3.220 19 H -0.189 1.189 20 H -0.190 1.190 21 H -0.194 1.194 22 C -0.101 4.101 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.142 4.142 26 C -0.138 4.138 27 C -0.138 4.138 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.258 0.742 36 H 0.216 0.784 37 H 0.215 0.785 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.144 0.856 42 H 0.158 0.842 43 H 0.160 0.840 44 H 0.162 0.838 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.344 24.374 9.660 26.757 hybrid contribution 0.498 -0.507 -1.058 1.274 sum -4.845 23.867 8.603 25.828 Atomic orbital electron populations 1.21760 0.94884 1.01434 1.02477 1.21614 0.96463 0.96877 1.01531 1.21982 0.92756 0.96476 1.03953 1.19948 0.94586 0.90709 0.86917 0.90352 1.45836 1.66427 1.05346 1.17424 1.19520 0.77009 0.83859 0.87420 1.90864 1.51079 1.61153 1.41385 1.30753 1.15321 1.26167 1.05567 1.07526 0.74368 0.77476 0.78720 1.93412 1.62839 1.82411 1.59746 1.93415 1.39122 1.78570 1.86938 1.27634 1.08287 1.04796 1.14565 1.20735 1.48418 0.90094 1.01057 0.92583 1.25710 0.93363 1.03827 0.94548 1.69978 1.42702 1.37710 1.03826 0.85553 0.78981 0.78660 0.78784 1.18913 1.18966 1.19368 1.19793 1.00970 0.94211 0.95105 1.21200 0.98846 0.96863 0.97109 1.21413 0.99202 0.93522 0.99982 1.21542 0.99096 1.00789 0.92761 1.21458 0.98107 0.95609 0.98666 1.21162 0.99958 0.94336 0.98344 0.91464 0.91898 0.93850 0.93862 0.93524 0.89504 0.90031 0.74191 0.78361 0.78509 0.88754 0.88854 0.91633 0.85630 0.84239 0.83962 0.83761 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.91 71.98 0.71 -2.52 16 2 C -0.13 -3.33 4.54 30.59 0.14 -3.19 16 3 C -0.11 -2.15 4.87 30.59 0.15 -2.01 16 4 C 0.18 3.70 2.46 44.25 0.11 3.81 16 5 H 0.08 1.97 7.44 -2.39 -0.02 1.95 16 6 N -0.70 -14.40 4.98 -446.10 -2.22 -16.62 16 7 C 0.54 16.09 6.42 87.66 0.56 16.66 16 8 O -0.57 -22.51 12.76 -0.15 0.00 -22.51 16 9 C -0.65 -17.24 6.29 71.24 0.45 -16.79 16 10 S 2.43 105.15 3.88 -56.49 -0.22 104.93 16 11 O -0.99 -50.26 17.94 -125.73 -2.26 -52.51 16 12 O -0.98 -49.52 17.95 -125.77 -2.26 -51.78 16 13 C -0.42 -19.73 5.56 71.23 0.40 -19.33 16 14 C -0.56 -32.02 9.13 25.60 0.23 -31.79 16 15 H 0.06 3.26 7.71 -2.91 -0.02 3.24 16 16 C 0.03 1.59 5.46 84.66 0.46 2.05 16 17 N -0.91 -50.30 13.29 21.45 0.28 -50.01 16 18 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 C -0.10 -1.63 4.95 -19.87 -0.10 -1.73 16 23 C -0.12 -1.90 9.67 22.27 0.22 -1.69 16 24 C -0.12 -1.57 10.05 22.27 0.22 -1.34 16 25 C -0.12 -1.37 10.05 22.27 0.22 -1.15 16 26 C -0.12 -1.33 10.05 22.27 0.22 -1.11 16 27 C -0.12 -1.53 9.06 22.27 0.20 -1.33 16 28 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 1.36 5.64 -2.38 -0.01 1.34 16 32 H 0.05 1.41 7.85 -2.39 -0.02 1.39 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.42 5.57 6.87 -92.70 -0.64 4.93 16 36 H 0.20 3.55 8.14 -2.39 -0.02 3.53 16 37 H 0.20 3.61 8.14 -2.40 -0.02 3.59 16 38 H 0.09 4.18 8.14 -2.39 -0.02 4.17 16 39 H 0.09 4.16 8.14 -2.39 -0.02 4.14 16 40 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 41 H 0.13 1.84 8.04 -2.91 -0.02 1.82 16 42 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 43 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 44 H 0.14 0.94 8.06 -2.91 -0.02 0.92 16 45 H 0.14 1.22 6.92 -2.91 -0.02 1.20 16 Total: -1.00 -83.55 386.34 -0.09 -83.64 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.35 Total: 20.97 kcal Atomic # 6 Polarization: -65.65 SS G_CDS: 4.20 Total: -61.45 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: -1.94 Total: -66.63 kcal Atomic # 8 Polarization: -122.28 SS G_CDS: -4.52 Total: -126.80 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 105.15 SS G_CDS: -0.22 Total: 104.93 kcal Total: -83.55 -0.09 -83.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905264897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.259 kcal (2) G-P(sol) polarization free energy of solvation -83.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds