Wall clock time and date at job start Sat Apr 11 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 109.47675 * 2 1 4 4 C 1.38232 * 120.00328 * 89.99526 * 3 2 1 5 5 C 1.38233 * 120.00534 * 179.97438 * 4 3 2 6 6 C 1.38241 * 119.99832 * 0.02665 * 5 4 3 7 7 C 1.50695 * 120.00038 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47390 * 89.99844 * 7 6 5 9 9 C 1.46506 * 119.99759 * 89.99689 * 8 7 6 10 10 C 1.34771 * 120.00157 * 270.00017 * 8 7 6 11 11 O 1.21283 * 120.00062 * 0.02562 * 10 8 7 12 12 C 1.50700 * 120.00216 * 179.97438 * 10 8 7 13 13 S 1.81397 * 109.47435 * 180.02562 * 12 10 8 14 14 O 1.42105 * 108.57738 * 294.48736 * 13 12 10 15 15 O 1.42102 * 108.57733 * 65.51014 * 13 12 10 16 16 C 1.81396 * 101.92411 * 180.02562 * 13 12 10 17 17 C 1.50697 * 109.47286 * 180.02562 * 16 13 12 18 18 H 1.08007 * 119.99902 * 359.97438 * 17 16 13 19 19 C 1.37881 * 120.00284 * 180.02562 * 17 16 13 20 20 N 1.31515 * 120.00094 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99745 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47316 * 89.99792 * 21 19 17 23 23 H 1.48500 * 109.47110 * 210.00106 * 21 19 17 24 24 H 1.48504 * 109.47095 * 330.00049 * 21 19 17 25 25 C 1.38236 * 119.99635 * 0.24986 * 6 5 4 26 26 C 1.38239 * 120.00365 * 359.49531 * 25 6 5 27 27 H 1.09001 * 109.46934 * 300.00615 * 1 2 3 28 28 H 1.08999 * 109.47171 * 60.00000 * 1 2 3 29 29 H 1.08995 * 109.47730 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46934 * 239.99385 * 2 1 3 31 31 H 1.08999 * 109.47171 * 120.00000 * 2 1 3 32 32 H 1.08003 * 119.99954 * 0.02562 * 4 3 2 33 33 H 1.07994 * 120.00604 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47441 * 329.99564 * 7 6 5 35 35 H 1.08999 * 109.46821 * 210.00082 * 7 6 5 36 36 H 1.09001 * 109.47060 * 90.00688 * 9 8 7 37 37 H 1.09004 * 109.47073 * 210.00177 * 9 8 7 38 38 H 1.09000 * 109.47212 * 330.00260 * 9 8 7 39 39 H 1.09000 * 109.47357 * 300.00116 * 12 10 8 40 40 H 1.08998 * 109.46869 * 60.00030 * 12 10 8 41 41 H 1.09005 * 109.46878 * 299.99857 * 16 13 12 42 42 H 1.09001 * 109.47128 * 60.00112 * 16 13 12 43 43 H 0.96997 * 119.99680 * 180.02562 * 20 19 17 44 44 H 1.08006 * 119.99782 * 179.72752 * 25 6 5 45 45 H 1.07995 * 120.00354 * 180.24593 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7242 3.3755 1.1971 6 6 2.9547 4.0271 -0.0001 7 6 3.4572 5.4478 -0.0001 8 7 4.9221 5.4477 0.0001 9 6 5.6547 5.4476 -1.2687 10 6 5.5959 5.4477 1.1673 11 8 4.9895 5.4473 2.2176 12 6 7.1029 5.4471 1.1674 13 16 7.7075 5.4465 2.8777 14 8 7.3325 6.6724 3.4908 15 8 7.3314 4.2207 3.4903 16 6 9.5058 5.4465 2.6395 17 6 10.1903 5.4454 3.9820 18 1 9.6023 5.4452 4.8880 19 6 11.5673 5.4458 4.0538 20 7 12.1647 5.4453 5.2255 21 14 12.5842 5.4470 2.4869 22 1 12.8532 6.8473 2.0723 23 1 13.8709 4.7472 2.7313 24 1 11.8368 4.7473 1.4112 25 6 2.7189 3.3773 -1.1972 26 6 2.2625 2.0724 -1.1972 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0831 1.5632 2.1324 33 1 2.9046 3.8845 2.1324 34 1 3.0938 5.9618 0.8898 35 1 3.0939 5.9616 -0.8901 36 1 5.8366 6.4752 -1.5833 37 1 6.6071 4.9337 -1.1383 38 1 5.0656 4.9338 -2.0283 39 1 7.4660 4.5568 0.6538 40 1 7.4667 6.3368 0.6534 41 1 9.7985 4.5567 2.0821 42 1 9.7985 6.3367 2.0827 43 1 13.1333 5.4460 5.2759 44 1 2.8948 3.8879 -2.1325 45 1 2.0820 1.5635 -2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:07 Heat of formation + Delta-G solvation = -85.415078 kcal Electronic energy + Delta-G solvation = -27012.802481 eV Core-core repulsion = 23122.648940 eV Total energy + Delta-G solvation = -3890.153541 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.36461 -39.29071 -36.12730 -36.04774 -35.04637 -34.39022 -33.23760 -31.43629 -31.07965 -29.95184 -29.51518 -27.44259 -25.86506 -23.41286 -22.99118 -22.85386 -20.88972 -19.68993 -18.04487 -17.40310 -17.33238 -16.78888 -16.47015 -15.90906 -15.74214 -15.40786 -15.24923 -15.06730 -14.73239 -14.13282 -14.01805 -13.97043 -13.57198 -13.50611 -13.44942 -13.11010 -12.78439 -12.70511 -12.61184 -12.50496 -12.25354 -12.15725 -11.95729 -11.59775 -11.43593 -11.13916 -11.13706 -11.08940 -11.00173 -10.87378 -10.49832 -10.33164 -10.17011 -9.83666 -9.33387 -9.05740 -9.00596 -8.82898 -8.73251 -6.29605 -4.37987 0.70568 1.07218 1.26902 2.42827 2.77964 3.12901 3.17770 3.21922 3.62452 3.68094 4.13736 4.20981 4.45731 4.51158 4.53819 4.67989 4.71925 4.80651 4.82476 4.86567 4.95357 5.04358 5.05334 5.14961 5.22628 5.25602 5.28650 5.35396 5.40158 5.43033 5.50255 5.59197 5.69456 5.81329 5.91445 5.93807 6.13988 6.16771 6.24641 6.27027 6.45260 6.46062 6.85147 7.01608 7.19512 7.89617 8.04548 8.65699 9.24123 10.81631 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017786 B = 0.002601 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.881423 B =10763.839359 C =11107.034704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.079 4.079 4 C -0.119 4.119 5 C -0.089 4.089 6 C -0.115 4.115 7 C 0.154 3.846 8 N -0.608 5.608 9 C 0.074 3.926 10 C 0.547 3.453 11 O -0.521 6.521 12 C -0.678 4.678 13 S 2.445 3.555 14 O -0.933 6.933 15 O -0.932 6.932 16 C -0.461 4.461 17 C -0.529 4.529 18 H 0.090 0.910 19 C 0.087 3.913 20 N -0.879 5.879 21 Si 0.882 3.118 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.263 1.263 25 C -0.105 4.105 26 C -0.125 4.125 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.271 0.729 44 H 0.119 0.881 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.980 -5.371 -20.157 28.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 C -0.079 4.079 4 C -0.137 4.137 5 C -0.108 4.108 6 C -0.117 4.117 7 C 0.032 3.968 8 N -0.342 5.342 9 C -0.069 4.069 10 C 0.334 3.666 11 O -0.397 6.397 12 C -0.801 4.801 13 S 2.624 3.376 14 O -0.930 6.930 15 O -0.929 6.929 16 C -0.594 4.594 17 C -0.567 4.567 18 H 0.107 0.893 19 C -0.120 4.120 20 N -0.515 5.515 21 Si 0.708 3.292 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.188 1.188 25 C -0.123 4.123 26 C -0.143 4.143 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.141 0.859 33 H 0.150 0.850 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.172 0.828 40 H 0.172 0.828 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.137 0.863 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.681 -5.351 -18.785 27.728 hybrid contribution 1.262 -0.028 -1.842 2.233 sum -18.419 -5.379 -20.626 28.172 Atomic orbital electron populations 1.21739 0.94696 1.01669 1.02207 1.20560 0.96182 0.92721 1.02942 1.19941 0.98586 0.96149 0.93259 1.21099 0.99969 0.94924 0.97669 1.21310 0.96409 0.94662 0.98392 1.20188 1.00988 0.96951 0.93526 1.20403 0.79041 0.93071 1.04295 1.47739 1.06194 1.74033 1.06209 1.21889 0.97623 1.02207 0.85138 1.19386 0.87662 0.75693 0.83888 1.90830 1.69665 1.48842 1.30327 1.31202 1.02195 1.12420 1.34280 1.07817 0.79164 0.75507 0.75156 1.93489 1.82780 1.45996 1.70730 1.93491 1.82713 1.45989 1.70727 1.28110 1.18213 1.05589 1.07502 1.20104 0.92836 1.55273 0.88491 0.89254 1.24900 0.97279 0.93231 0.96545 1.69866 1.10199 1.47678 1.23783 0.86742 0.79992 0.78959 0.83507 1.19597 1.20595 1.18803 1.20973 0.99423 0.94832 0.97112 1.20945 1.01035 0.94889 0.97402 0.92472 0.92655 0.92413 0.91106 0.90890 0.85944 0.85020 0.88528 0.89433 0.92016 0.90498 0.90837 0.82840 0.82772 0.89749 0.90153 0.91855 0.86339 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.09 -0.66 6.06 -27.89 -0.17 -0.83 16 3 C -0.08 -0.78 5.13 -104.63 -0.54 -1.32 16 4 C -0.12 -1.35 9.70 -39.59 -0.38 -1.73 16 5 C -0.09 -1.13 9.70 -39.58 -0.38 -1.52 16 6 C -0.12 -1.27 5.46 -104.62 -0.57 -1.84 16 7 C 0.15 1.59 5.53 -5.20 -0.03 1.56 16 8 N -0.61 -7.00 2.86 -182.95 -0.52 -7.53 16 9 C 0.07 0.55 10.24 59.85 0.61 1.16 16 10 C 0.55 8.59 7.69 -10.99 -0.08 8.51 16 11 O -0.52 -10.27 14.73 2.55 0.04 -10.23 16 12 C -0.68 -9.51 4.84 36.01 0.17 -9.34 16 13 S 2.45 51.16 3.88 -107.50 -0.42 50.75 16 14 O -0.93 -22.68 17.95 -59.52 -1.07 -23.75 16 15 O -0.93 -22.76 17.95 -59.53 -1.07 -23.83 16 16 C -0.46 -10.01 4.63 36.00 0.17 -9.84 16 17 C -0.53 -14.86 9.68 -34.44 -0.33 -15.19 16 18 H 0.09 2.76 7.96 -52.48 -0.42 2.35 16 19 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 20 N -0.88 -26.24 13.96 55.43 0.77 -25.46 16 21 Si 0.88 19.98 27.47 -169.99 -4.67 15.31 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.26 -5.42 6.54 56.52 0.37 -5.05 16 25 C -0.10 -0.96 9.70 -39.58 -0.38 -1.34 16 26 C -0.12 -1.13 9.70 -39.58 -0.38 -1.52 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.13 1.87 7.58 -52.49 -0.40 1.47 16 34 H 0.10 1.13 7.37 -51.93 -0.38 0.75 16 35 H 0.09 0.62 8.01 -51.93 -0.42 0.21 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.52 6.44 -51.93 -0.33 0.18 16 38 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 39 H 0.15 1.62 7.40 -51.92 -0.38 1.24 16 40 H 0.15 1.57 8.11 -51.93 -0.42 1.15 16 41 H 0.08 1.63 7.20 -51.92 -0.37 1.26 16 42 H 0.08 1.52 7.57 -51.92 -0.39 1.13 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 389.92 15.07 5.88 5.88 Total: -1.00 -38.50 389.92 -10.00 -48.50 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.91 Total: 1.85 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: -2.04 Total: -31.49 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.25 Total: -32.99 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: -2.10 Total: -57.81 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.67 Total: 15.31 kcal Atomic # 16 Polarization: 51.16 SS G_CDS: -0.42 Total: 50.75 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.50 -10.00 -48.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.913 kcal (2) G-P(sol) polarization free energy of solvation -38.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds