Wall clock time and date at job start Sat Apr 11 2020 05:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 109.47675 * 2 1 4 4 C 1.38232 * 120.00328 * 89.99526 * 3 2 1 5 5 C 1.38233 * 120.00534 * 179.97438 * 4 3 2 6 6 C 1.38241 * 119.99832 * 0.02665 * 5 4 3 7 7 C 1.50695 * 120.00038 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47390 * 89.99844 * 7 6 5 9 9 C 1.46506 * 119.99759 * 89.99689 * 8 7 6 10 10 C 1.34771 * 120.00157 * 270.00017 * 8 7 6 11 11 O 1.21283 * 120.00062 * 0.02562 * 10 8 7 12 12 C 1.50700 * 120.00216 * 179.97438 * 10 8 7 13 13 S 1.81397 * 109.47435 * 180.02562 * 12 10 8 14 14 O 1.42105 * 108.57738 * 294.48736 * 13 12 10 15 15 O 1.42102 * 108.57733 * 65.51014 * 13 12 10 16 16 C 1.81396 * 101.92411 * 180.02562 * 13 12 10 17 17 C 1.50697 * 109.47286 * 180.02562 * 16 13 12 18 18 H 1.08007 * 119.99902 * 359.97438 * 17 16 13 19 19 C 1.37881 * 120.00284 * 180.02562 * 17 16 13 20 20 N 1.31515 * 120.00094 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99745 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47316 * 89.99792 * 21 19 17 23 23 H 1.48500 * 109.47110 * 210.00106 * 21 19 17 24 24 H 1.48504 * 109.47095 * 330.00049 * 21 19 17 25 25 C 1.38236 * 119.99635 * 0.24986 * 6 5 4 26 26 C 1.38239 * 120.00365 * 359.49531 * 25 6 5 27 27 H 1.09001 * 109.46934 * 300.00615 * 1 2 3 28 28 H 1.08999 * 109.47171 * 60.00000 * 1 2 3 29 29 H 1.08995 * 109.47730 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46934 * 239.99385 * 2 1 3 31 31 H 1.08999 * 109.47171 * 120.00000 * 2 1 3 32 32 H 1.08003 * 119.99954 * 0.02562 * 4 3 2 33 33 H 1.07994 * 120.00604 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47441 * 329.99564 * 7 6 5 35 35 H 1.08999 * 109.46821 * 210.00082 * 7 6 5 36 36 H 1.09001 * 109.47060 * 90.00688 * 9 8 7 37 37 H 1.09004 * 109.47073 * 210.00177 * 9 8 7 38 38 H 1.09000 * 109.47212 * 330.00260 * 9 8 7 39 39 H 1.09000 * 109.47357 * 300.00116 * 12 10 8 40 40 H 1.08998 * 109.46869 * 60.00030 * 12 10 8 41 41 H 1.09005 * 109.46878 * 299.99857 * 16 13 12 42 42 H 1.09001 * 109.47128 * 60.00112 * 16 13 12 43 43 H 0.96997 * 119.99680 * 180.02562 * 20 19 17 44 44 H 1.08006 * 119.99782 * 179.72752 * 25 6 5 45 45 H 1.07995 * 120.00354 * 180.24593 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7242 3.3755 1.1971 6 6 2.9547 4.0271 -0.0001 7 6 3.4572 5.4478 -0.0001 8 7 4.9221 5.4477 0.0001 9 6 5.6547 5.4476 -1.2687 10 6 5.5959 5.4477 1.1673 11 8 4.9895 5.4473 2.2176 12 6 7.1029 5.4471 1.1674 13 16 7.7075 5.4465 2.8777 14 8 7.3325 6.6724 3.4908 15 8 7.3314 4.2207 3.4903 16 6 9.5058 5.4465 2.6395 17 6 10.1903 5.4454 3.9820 18 1 9.6023 5.4452 4.8880 19 6 11.5673 5.4458 4.0538 20 7 12.1647 5.4453 5.2255 21 14 12.5842 5.4470 2.4869 22 1 12.8532 6.8473 2.0723 23 1 13.8709 4.7472 2.7313 24 1 11.8368 4.7473 1.4112 25 6 2.7189 3.3773 -1.1972 26 6 2.2625 2.0724 -1.1972 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0831 1.5632 2.1324 33 1 2.9046 3.8845 2.1324 34 1 3.0938 5.9618 0.8898 35 1 3.0939 5.9616 -0.8901 36 1 5.8366 6.4752 -1.5833 37 1 6.6071 4.9337 -1.1383 38 1 5.0656 4.9338 -2.0283 39 1 7.4660 4.5568 0.6538 40 1 7.4667 6.3368 0.6534 41 1 9.7985 4.5567 2.0821 42 1 9.7985 6.3367 2.0827 43 1 13.1333 5.4460 5.2759 44 1 2.8948 3.8879 -2.1325 45 1 2.0820 1.5635 -2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:05 Heat of formation + Delta-G solvation = -114.218236 kcal Electronic energy + Delta-G solvation = -27014.051480 eV Core-core repulsion = 23122.648940 eV Total energy + Delta-G solvation = -3891.402540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.33990 -40.16681 -37.81911 -37.10970 -36.76547 -35.28718 -35.11185 -32.39157 -31.85464 -31.73895 -30.56618 -28.08254 -26.69333 -25.08595 -23.99455 -23.62605 -21.67097 -20.72455 -19.65470 -19.28183 -18.52438 -17.76346 -17.60579 -17.07501 -17.02290 -16.55751 -16.39852 -16.32323 -15.94521 -15.78654 -14.81745 -14.67828 -14.62697 -14.50902 -14.30381 -14.23763 -14.16474 -13.74868 -13.59968 -13.47078 -13.32290 -13.07294 -12.94369 -12.88550 -12.84802 -12.61890 -12.55955 -12.27006 -12.08962 -11.82731 -11.80223 -11.78263 -11.67955 -11.36617 -11.08404 -10.88648 -9.86523 -9.84698 -9.51398 -8.39829 -6.57509 -0.89738 0.28807 0.47629 1.31348 1.37540 1.43528 1.54189 1.83969 2.16381 2.33331 2.81182 2.90855 2.98114 3.24702 3.39222 3.75960 3.83814 3.94803 3.98612 4.09118 4.13077 4.19270 4.35007 4.38547 4.41903 4.47737 4.55043 4.61940 4.62141 4.69210 4.73227 4.80207 4.98307 5.04511 5.06825 5.12431 5.17816 5.27289 5.35723 5.37397 5.48471 5.65009 5.70704 5.86981 6.09393 6.10084 6.48456 6.84398 7.09359 8.76493 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017786 B = 0.002601 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.881423 B =10763.839359 C =11107.034704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.083 4.083 4 C -0.139 4.139 5 C -0.120 4.120 6 C -0.123 4.123 7 C 0.150 3.850 8 N -0.594 5.594 9 C 0.057 3.943 10 C 0.527 3.473 11 O -0.580 6.580 12 C -0.640 4.640 13 S 2.432 3.568 14 O -0.988 6.988 15 O -0.989 6.989 16 C -0.465 4.465 17 C -0.558 4.558 18 H 0.026 0.974 19 C 0.014 3.986 20 N -0.941 5.941 21 Si 0.960 3.040 22 H -0.254 1.254 23 H -0.283 1.283 24 H -0.214 1.214 25 C -0.095 4.095 26 C -0.124 4.124 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.131 0.869 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.203 0.797 40 H 0.208 0.792 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.275 0.725 44 H 0.157 0.843 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.614 -5.790 -27.566 33.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.083 4.083 4 C -0.157 4.157 5 C -0.139 4.139 6 C -0.125 4.125 7 C 0.029 3.971 8 N -0.326 5.326 9 C -0.084 4.084 10 C 0.314 3.686 11 O -0.461 6.461 12 C -0.770 4.770 13 S 2.619 3.381 14 O -0.985 6.985 15 O -0.987 6.987 16 C -0.598 4.598 17 C -0.596 4.596 18 H 0.044 0.956 19 C -0.186 4.186 20 N -0.579 5.579 21 Si 0.779 3.221 22 H -0.178 1.178 23 H -0.208 1.208 24 H -0.136 1.136 25 C -0.113 4.113 26 C -0.142 4.142 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.134 0.866 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.149 0.851 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.220 0.780 40 H 0.225 0.775 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.084 0.916 44 H 0.175 0.825 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.319 -5.770 -26.164 33.032 hybrid contribution 0.998 0.084 0.432 1.091 sum -18.321 -5.687 -25.732 32.096 Atomic orbital electron populations 1.21719 0.93941 1.02460 1.01910 1.20610 0.96778 0.91462 1.03510 1.20221 0.98017 0.97149 0.92959 1.21180 1.01087 0.94822 0.98652 1.21244 0.98797 0.95587 0.98262 1.20273 1.01405 0.97247 0.93528 1.20556 0.78596 0.92971 1.05026 1.47845 1.06705 1.71589 1.06418 1.22379 0.98276 1.04494 0.83265 1.19775 0.88355 0.75953 0.84524 1.90838 1.70711 1.51797 1.32741 1.30720 1.01386 1.17526 1.27369 1.07410 0.78956 0.73578 0.78122 1.93420 1.83245 1.47335 1.74518 1.93422 1.83212 1.47456 1.74577 1.28071 1.18178 1.09045 1.04527 1.20395 0.93502 1.55817 0.89877 0.95553 1.26253 0.98743 0.92113 1.01530 1.70061 1.10854 1.49463 1.27472 0.85544 0.77609 0.80372 0.78609 1.17807 1.20834 1.13596 1.21329 0.97762 0.94764 0.97465 1.21356 0.99751 0.95056 0.98009 0.93633 0.92086 0.91090 0.89407 0.91448 0.86572 0.88520 0.91333 0.85115 0.89587 0.89069 0.88217 0.78000 0.77454 0.85927 0.85935 0.91563 0.82540 0.83297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.89 71.98 0.71 -0.97 16 2 C -0.09 -1.18 6.06 29.84 0.18 -1.00 16 3 C -0.08 -1.53 5.13 -19.87 -0.10 -1.64 16 4 C -0.14 -3.36 9.70 22.27 0.22 -3.14 16 5 C -0.12 -3.27 9.70 22.27 0.22 -3.05 16 6 C -0.12 -2.55 5.46 -19.87 -0.11 -2.66 16 7 C 0.15 2.81 5.53 85.63 0.47 3.28 16 8 N -0.59 -11.61 2.86 -851.13 -2.43 -14.04 16 9 C 0.06 0.46 10.24 127.77 1.31 1.77 16 10 C 0.53 15.74 7.69 87.66 0.67 16.41 16 11 O -0.58 -24.11 14.73 -0.17 0.00 -24.11 16 12 C -0.64 -15.40 4.84 71.24 0.34 -15.06 16 13 S 2.43 103.32 3.88 -56.49 -0.22 103.10 16 14 O -0.99 -50.77 17.95 -125.76 -2.26 -53.02 16 15 O -0.99 -51.34 17.95 -125.74 -2.26 -53.60 16 16 C -0.47 -19.33 4.63 71.24 0.33 -19.00 16 17 C -0.56 -32.57 9.68 25.60 0.25 -32.32 16 18 H 0.03 1.79 7.96 -2.91 -0.02 1.77 16 19 C 0.01 0.78 5.47 84.66 0.46 1.24 16 20 N -0.94 -58.88 13.96 21.45 0.30 -58.58 16 21 Si 0.96 39.17 27.47 68.60 1.88 41.05 16 22 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 23 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.21 -7.02 6.54 99.48 0.65 -6.37 16 25 C -0.10 -1.35 9.70 22.27 0.22 -1.14 16 26 C -0.12 -1.81 9.70 22.27 0.22 -1.59 16 27 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.92 8.09 -2.39 -0.02 0.90 16 31 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 32 H 0.12 2.73 8.06 -2.91 -0.02 2.70 16 33 H 0.10 3.21 7.58 -2.91 -0.02 3.19 16 34 H 0.07 1.67 7.37 -2.39 -0.02 1.66 16 35 H 0.13 1.28 8.01 -2.39 -0.02 1.26 16 36 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.09 0.53 6.44 -2.38 -0.02 0.51 16 38 H 0.10 0.36 8.07 -2.39 -0.02 0.34 16 39 H 0.20 2.95 7.40 -2.39 -0.02 2.93 16 40 H 0.21 2.81 8.11 -2.39 -0.02 2.79 16 41 H 0.12 4.18 7.20 -2.39 -0.02 4.16 16 42 H 0.12 4.09 7.57 -2.39 -0.02 4.07 16 43 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 44 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 45 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -98.87 389.92 1.32 -97.55 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.92 Total: 20.52 kcal Atomic # 6 Polarization: -64.25 SS G_CDS: 5.39 Total: -58.86 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -2.13 Total: -72.62 kcal Atomic # 8 Polarization: -126.22 SS G_CDS: -4.52 Total: -130.74 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 1.88 Total: 41.05 kcal Atomic # 16 Polarization: 103.32 SS G_CDS: -0.22 Total: 103.10 kcal Total: -98.87 1.32 -97.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.672 kcal (2) G-P(sol) polarization free energy of solvation -98.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds