Wall clock time and date at job start Sat Apr 11 2020 05:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38114 * 120.03601 * 2 1 4 4 C 1.38284 * 120.07116 * 179.72753 * 3 2 1 5 5 C 1.38284 * 120.14069 * 0.27528 * 4 3 2 6 6 C 1.38114 * 120.07021 * 359.95469 * 5 4 3 7 7 C 1.50701 * 120.03403 * 180.02562 * 6 5 4 8 8 C 1.38870 * 119.92957 * 0.02562 * 6 5 4 9 9 N 1.39922 * 120.07054 * 180.02562 * 8 6 5 10 10 C 1.34780 * 120.00475 * 244.14153 * 9 8 6 11 11 O 1.21286 * 119.99482 * 4.76722 * 10 9 8 12 12 C 1.50690 * 120.00535 * 184.76962 * 10 9 8 13 13 C 1.53002 * 109.47379 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47144 * 180.02562 * 13 12 10 15 15 S 1.81397 * 109.47255 * 179.97438 * 14 13 12 16 16 O 1.42094 * 108.58143 * 294.48803 * 15 14 13 17 17 O 1.42104 * 108.57738 * 65.50940 * 15 14 13 18 18 C 1.81401 * 101.92573 * 179.97438 * 15 14 13 19 19 C 1.50695 * 109.47079 * 180.02562 * 18 15 14 20 20 H 1.07995 * 120.00429 * 359.97438 * 19 18 15 21 21 C 1.37887 * 119.99761 * 180.02562 * 19 18 15 22 22 N 1.31511 * 119.99697 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00084 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47084 * 89.99482 * 23 21 19 25 25 H 1.48492 * 109.47272 * 209.99726 * 23 21 19 26 26 H 1.48502 * 109.46823 * 330.00010 * 23 21 19 27 27 H 1.08999 * 109.47601 * 96.72429 * 1 2 3 28 28 H 1.09003 * 109.46969 * 216.72143 * 1 2 3 29 29 H 1.09005 * 109.47591 * 336.71681 * 1 2 3 30 30 H 1.07994 * 119.96297 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.92743 * 180.24994 * 4 3 2 32 32 H 1.07995 * 119.96171 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47196 * 90.00279 * 7 6 5 34 34 H 1.08999 * 109.46941 * 210.00451 * 7 6 5 35 35 H 1.09004 * 109.47093 * 330.00080 * 7 6 5 36 36 H 0.97000 * 120.00089 * 64.13409 * 9 8 6 37 37 H 1.09000 * 109.47065 * 299.99967 * 12 10 9 38 38 H 1.09001 * 109.47333 * 59.99558 * 12 10 9 39 39 H 1.09006 * 109.46694 * 299.99256 * 13 12 10 40 40 H 1.08993 * 109.47163 * 59.99747 * 13 12 10 41 41 H 1.09000 * 109.47072 * 299.99710 * 14 13 12 42 42 H 1.09001 * 109.47560 * 59.99445 * 14 13 12 43 43 H 1.08999 * 109.46968 * 300.00114 * 18 15 14 44 44 H 1.08994 * 109.46946 * 60.00180 * 18 15 14 45 45 H 0.97007 * 119.99888 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1957 0.0000 4 6 3.5811 1.1965 0.0057 5 6 4.2762 0.0011 0.0057 6 6 3.5908 -1.1980 0.0009 7 6 4.3491 -2.5003 0.0014 8 6 2.2021 -1.2022 -0.0044 9 7 1.5047 -2.4153 -0.0087 10 6 0.7315 -2.7444 -1.0625 11 8 0.7075 -2.0313 -2.0432 12 6 -0.1033 -3.9983 -1.0221 13 6 -0.8795 -4.1368 -2.3333 14 6 -1.7275 -5.4096 -2.2920 15 16 -2.6485 -5.5733 -3.8462 16 8 -3.5802 -4.5042 -3.9352 17 8 -1.7204 -5.7746 -4.9033 18 6 -3.5630 -7.1170 -3.5791 19 6 -4.4017 -7.4205 -4.7938 20 1 -4.3865 -6.7516 -5.6415 21 6 -5.1893 -8.5519 -4.8225 22 7 -5.2082 -9.3663 -3.7900 23 14 -6.2295 -8.9279 -6.3278 24 1 -5.4429 -9.7529 -7.2796 25 1 -7.4462 -9.6727 -5.9154 26 1 -6.6263 -7.6568 -6.9853 27 1 -0.3634 -0.1203 -1.0206 28 1 -0.3633 -0.8238 0.6145 29 1 -0.3634 0.9440 0.4062 30 1 1.6582 2.1309 -0.0004 31 1 4.1193 2.1328 0.0098 32 1 5.3561 0.0051 0.0097 33 1 4.5280 -2.8161 1.0292 34 1 3.7648 -3.2611 -0.5161 35 1 5.3030 -2.3655 -0.5085 36 1 1.5778 -3.0194 0.7466 37 1 0.5468 -4.8636 -0.8921 38 1 -0.8038 -3.9418 -0.1889 39 1 -1.5297 -3.2716 -2.4636 40 1 -0.1787 -4.1935 -3.1661 41 1 -1.0778 -6.2749 -2.1613 42 1 -2.4284 -5.3524 -1.4591 43 1 -2.8590 -7.9320 -3.4113 44 1 -4.2096 -7.0102 -2.7082 45 1 -5.7621 -10.1624 -3.8104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:10 Heat of formation + Delta-G solvation = -104.355897 kcal Electronic energy + Delta-G solvation = -26416.407314 eV Core-core repulsion = 22525.432437 eV Total energy + Delta-G solvation = -3890.974877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.94201 -38.95912 -35.96867 -35.18574 -35.01347 -34.51123 -33.85461 -33.33131 -31.16667 -29.11756 -28.68303 -27.08802 -26.93104 -23.84137 -22.90868 -21.53294 -21.22398 -20.42259 -18.19503 -17.79228 -17.27530 -16.76121 -16.52086 -15.85090 -15.80112 -15.52568 -15.08383 -14.99399 -14.38549 -14.25421 -14.14628 -13.94223 -13.81031 -13.41375 -13.26866 -13.03115 -12.72545 -12.43231 -12.34974 -12.22050 -12.11011 -11.88549 -11.82608 -11.57330 -11.49916 -11.37664 -11.11928 -11.04168 -10.91246 -10.89104 -10.60036 -10.29836 -10.05852 -9.88634 -9.74119 -9.04160 -8.85673 -8.69870 -8.68930 -6.32450 -4.41168 0.94775 0.98050 1.06793 2.38931 2.83170 3.23188 3.28385 3.35294 3.41026 3.85329 4.22790 4.34043 4.45570 4.51122 4.56479 4.66247 4.67767 4.90402 4.94125 4.95142 5.05208 5.07479 5.09812 5.18873 5.23921 5.26159 5.41765 5.43785 5.45830 5.49291 5.52108 5.71027 5.75190 5.94541 5.97023 6.07300 6.13643 6.14612 6.25714 6.31341 6.66107 6.70930 6.75746 7.08684 7.50150 7.76520 7.96598 8.61102 9.25747 10.79473 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.031148 B = 0.001970 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.722942 B =14210.077330 C =14504.895927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.069 4.069 3 C -0.118 4.118 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.087 4.087 7 C -0.114 4.114 8 C 0.135 3.865 9 N -0.685 5.685 10 C 0.513 3.487 11 O -0.514 6.514 12 C -0.132 4.132 13 C -0.094 4.094 14 C -0.632 4.632 15 S 2.395 3.605 16 O -0.957 6.957 17 O -0.957 6.957 18 C -0.404 4.404 19 C -0.528 4.528 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.883 5.883 23 Si 0.906 3.094 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.266 1.266 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.408 0.592 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.554 14.558 15.530 27.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.071 4.071 3 C -0.137 4.137 4 C -0.133 4.133 5 C -0.138 4.138 6 C -0.089 4.089 7 C -0.171 4.171 8 C 0.043 3.957 9 N -0.335 5.335 10 C 0.301 3.699 11 O -0.388 6.388 12 C -0.173 4.173 13 C -0.133 4.133 14 C -0.757 4.757 15 S 2.581 3.419 16 O -0.954 6.954 17 O -0.954 6.954 18 C -0.539 4.539 19 C -0.567 4.567 20 H 0.090 0.910 21 C -0.132 4.132 22 N -0.519 5.519 23 Si 0.732 3.268 24 H -0.199 1.199 25 H -0.207 1.207 26 H -0.191 1.191 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.244 0.756 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.458 15.492 14.167 27.303 hybrid contribution -0.380 -1.127 0.591 1.328 sum 17.078 14.365 14.758 26.755 Atomic orbital electron populations 1.20831 0.90849 1.02381 1.03360 1.19998 0.96442 0.92157 0.98456 1.20936 0.94222 0.97155 1.01351 1.21139 0.94211 0.98051 0.99857 1.20883 0.99726 0.91521 1.01709 1.19986 0.92378 0.96109 1.00413 1.20742 0.99925 0.94180 1.02232 1.17211 0.89728 0.85302 1.03428 1.43459 1.48347 1.19917 1.21766 1.21015 0.79311 0.87596 0.82022 1.90759 1.63895 1.52553 1.31576 1.21687 0.99182 0.95506 1.00930 1.21017 0.98775 0.95902 0.97590 1.30551 1.13509 1.05598 1.26071 1.08813 0.76509 0.79970 0.76616 1.93477 1.61726 1.54580 1.85649 1.93479 1.64185 1.87107 1.50671 1.27510 1.08076 1.11687 1.06601 1.20382 1.26741 1.09985 0.99600 0.90984 1.24940 0.96133 0.95241 0.96906 1.69947 1.39191 1.13036 1.29751 0.86350 0.79445 0.79025 0.82022 1.19939 1.20700 1.19065 0.89989 0.91810 0.91541 0.85741 0.85861 0.85791 0.91086 0.91433 0.91240 0.75574 0.88228 0.88140 0.89683 0.89667 0.85467 0.85469 0.89781 0.89778 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 8.58 36.00 0.31 -0.86 16 2 C -0.07 -0.72 5.59 -104.44 -0.58 -1.31 16 3 C -0.12 -1.08 9.67 -39.61 -0.38 -1.46 16 4 C -0.11 -0.93 10.04 -39.55 -0.40 -1.33 16 5 C -0.12 -0.99 9.70 -39.61 -0.38 -1.38 16 6 C -0.09 -0.80 5.90 -104.43 -0.62 -1.41 16 7 C -0.11 -0.79 9.77 36.01 0.35 -0.44 16 8 C 0.14 1.39 5.53 -83.69 -0.46 0.93 16 9 N -0.68 -6.00 3.63 -9.87 -0.04 -6.03 16 10 C 0.51 5.87 6.67 -10.99 -0.07 5.80 16 11 O -0.51 -8.17 14.38 5.55 0.08 -8.09 16 12 C -0.13 -1.27 5.70 -27.89 -0.16 -1.42 16 13 C -0.09 -1.29 4.51 -26.73 -0.12 -1.41 16 14 C -0.63 -8.65 5.81 37.16 0.22 -8.44 16 15 S 2.40 48.35 4.64 -107.50 -0.50 47.85 16 16 O -0.96 -22.22 18.10 -57.83 -1.05 -23.27 16 17 O -0.96 -22.28 18.10 -57.83 -1.05 -23.33 16 18 C -0.40 -9.38 5.56 36.00 0.20 -9.18 16 19 C -0.53 -14.59 9.13 -34.44 -0.31 -14.91 16 20 H 0.07 1.99 7.71 -52.49 -0.40 1.58 16 21 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 22 N -0.88 -24.71 13.29 55.43 0.74 -23.98 16 23 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H 0.08 1.00 7.15 -51.93 -0.37 0.62 16 28 H 0.06 0.59 7.55 -51.93 -0.39 0.19 16 29 H 0.07 0.54 8.04 -51.93 -0.42 0.12 16 30 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 31 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.51 7.46 -51.93 -0.39 0.12 16 35 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 36 H 0.41 2.21 8.83 -40.82 -0.36 1.85 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 40 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 41 H 0.13 1.43 8.14 -51.92 -0.42 1.01 16 42 H 0.13 1.43 8.14 -51.92 -0.42 1.01 16 43 H 0.08 1.89 8.14 -51.92 -0.42 1.47 16 44 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 391.10 15.07 5.89 5.89 Total: -1.00 -37.47 391.10 -10.41 -47.88 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.96 Total: 1.87 kcal Atomic # 6 Polarization: -32.39 SS G_CDS: -2.52 Total: -34.90 kcal Atomic # 7 Polarization: -30.71 SS G_CDS: 0.70 Total: -30.01 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: -2.01 Total: -54.69 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 48.35 SS G_CDS: -0.50 Total: 47.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.47 -10.41 -47.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.473 kcal (2) G-P(sol) polarization free energy of solvation -37.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds