Wall clock time and date at job start Sat Apr 11 2020 05:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38114 * 120.03601 * 2 1 4 4 C 1.38284 * 120.07116 * 179.72753 * 3 2 1 5 5 C 1.38284 * 120.14069 * 0.27528 * 4 3 2 6 6 C 1.38114 * 120.07021 * 359.95469 * 5 4 3 7 7 C 1.50701 * 120.03403 * 180.02562 * 6 5 4 8 8 C 1.38870 * 119.92957 * 0.02562 * 6 5 4 9 9 N 1.39922 * 120.07054 * 180.02562 * 8 6 5 10 10 C 1.34780 * 120.00475 * 244.14153 * 9 8 6 11 11 O 1.21286 * 119.99482 * 4.76722 * 10 9 8 12 12 C 1.50690 * 120.00535 * 184.76962 * 10 9 8 13 13 C 1.53002 * 109.47379 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47144 * 180.02562 * 13 12 10 15 15 S 1.81397 * 109.47255 * 179.97438 * 14 13 12 16 16 O 1.42094 * 108.58143 * 294.48803 * 15 14 13 17 17 O 1.42104 * 108.57738 * 65.50940 * 15 14 13 18 18 C 1.81401 * 101.92573 * 179.97438 * 15 14 13 19 19 C 1.50695 * 109.47079 * 180.02562 * 18 15 14 20 20 H 1.07995 * 120.00429 * 359.97438 * 19 18 15 21 21 C 1.37887 * 119.99761 * 180.02562 * 19 18 15 22 22 N 1.31511 * 119.99697 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00084 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47084 * 89.99482 * 23 21 19 25 25 H 1.48492 * 109.47272 * 209.99726 * 23 21 19 26 26 H 1.48502 * 109.46823 * 330.00010 * 23 21 19 27 27 H 1.08999 * 109.47601 * 96.72429 * 1 2 3 28 28 H 1.09003 * 109.46969 * 216.72143 * 1 2 3 29 29 H 1.09005 * 109.47591 * 336.71681 * 1 2 3 30 30 H 1.07994 * 119.96297 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.92743 * 180.24994 * 4 3 2 32 32 H 1.07995 * 119.96171 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47196 * 90.00279 * 7 6 5 34 34 H 1.08999 * 109.46941 * 210.00451 * 7 6 5 35 35 H 1.09004 * 109.47093 * 330.00080 * 7 6 5 36 36 H 0.97000 * 120.00089 * 64.13409 * 9 8 6 37 37 H 1.09000 * 109.47065 * 299.99967 * 12 10 9 38 38 H 1.09001 * 109.47333 * 59.99558 * 12 10 9 39 39 H 1.09006 * 109.46694 * 299.99256 * 13 12 10 40 40 H 1.08993 * 109.47163 * 59.99747 * 13 12 10 41 41 H 1.09000 * 109.47072 * 299.99710 * 14 13 12 42 42 H 1.09001 * 109.47560 * 59.99445 * 14 13 12 43 43 H 1.08999 * 109.46968 * 300.00114 * 18 15 14 44 44 H 1.08994 * 109.46946 * 60.00180 * 18 15 14 45 45 H 0.97007 * 119.99888 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1957 0.0000 4 6 3.5811 1.1965 0.0057 5 6 4.2762 0.0011 0.0057 6 6 3.5908 -1.1980 0.0009 7 6 4.3491 -2.5003 0.0014 8 6 2.2021 -1.2022 -0.0044 9 7 1.5047 -2.4153 -0.0087 10 6 0.7315 -2.7444 -1.0625 11 8 0.7075 -2.0313 -2.0432 12 6 -0.1033 -3.9983 -1.0221 13 6 -0.8795 -4.1368 -2.3333 14 6 -1.7275 -5.4096 -2.2920 15 16 -2.6485 -5.5733 -3.8462 16 8 -3.5802 -4.5042 -3.9352 17 8 -1.7204 -5.7746 -4.9033 18 6 -3.5630 -7.1170 -3.5791 19 6 -4.4017 -7.4205 -4.7938 20 1 -4.3865 -6.7516 -5.6415 21 6 -5.1893 -8.5519 -4.8225 22 7 -5.2082 -9.3663 -3.7900 23 14 -6.2295 -8.9279 -6.3278 24 1 -5.4429 -9.7529 -7.2796 25 1 -7.4462 -9.6727 -5.9154 26 1 -6.6263 -7.6568 -6.9853 27 1 -0.3634 -0.1203 -1.0206 28 1 -0.3633 -0.8238 0.6145 29 1 -0.3634 0.9440 0.4062 30 1 1.6582 2.1309 -0.0004 31 1 4.1193 2.1328 0.0098 32 1 5.3561 0.0051 0.0097 33 1 4.5280 -2.8161 1.0292 34 1 3.7648 -3.2611 -0.5161 35 1 5.3030 -2.3655 -0.5085 36 1 1.5778 -3.0194 0.7466 37 1 0.5468 -4.8636 -0.8921 38 1 -0.8038 -3.9418 -0.1889 39 1 -1.5297 -3.2716 -2.4636 40 1 -0.1787 -4.1935 -3.1661 41 1 -1.0778 -6.2749 -2.1613 42 1 -2.4284 -5.3524 -1.4591 43 1 -2.8590 -7.9320 -3.4113 44 1 -4.2096 -7.0102 -2.7082 45 1 -5.7621 -10.1624 -3.8104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:09 Heat of formation + Delta-G solvation = -130.570457 kcal Electronic energy + Delta-G solvation = -26417.544062 eV Core-core repulsion = 22525.432437 eV Total energy + Delta-G solvation = -3892.111626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.69203 -39.72975 -37.71577 -36.79756 -35.90924 -35.56130 -35.35637 -34.50491 -31.87095 -31.01168 -29.63007 -27.83313 -27.55716 -25.64004 -23.98144 -22.38770 -21.90874 -21.20504 -19.67243 -18.93810 -18.61762 -18.02979 -17.42840 -17.38014 -16.94441 -16.77671 -16.21777 -16.17658 -15.98032 -15.20774 -15.02080 -14.87405 -14.62503 -14.45710 -14.07216 -13.96104 -13.88742 -13.74329 -13.62108 -13.33279 -13.20809 -12.93856 -12.89320 -12.85068 -12.81075 -12.71201 -12.52577 -12.50297 -12.19791 -12.16721 -11.90380 -11.80527 -11.55350 -11.10755 -10.78280 -10.75440 -10.63545 -9.51505 -9.37678 -8.39668 -6.54238 -0.62890 0.29126 0.40285 1.37366 1.37897 1.50130 1.57329 2.10541 2.26559 2.32747 2.76157 2.94360 2.99943 3.36825 3.53947 3.82485 3.87841 3.89064 3.89768 4.07920 4.15525 4.37241 4.39360 4.43808 4.55738 4.59258 4.62576 4.68641 4.72471 4.78501 4.83488 4.84003 4.85257 4.90792 4.95219 5.09907 5.12680 5.29192 5.39538 5.43962 5.49326 5.60440 5.63286 5.79012 6.10370 6.43160 6.55539 7.15451 7.21784 8.72540 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.031148 B = 0.001970 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.722942 B =14210.077330 C =14504.895927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.131 4.131 4 C -0.117 4.117 5 C -0.126 4.126 6 C -0.098 4.098 7 C -0.112 4.112 8 C 0.113 3.887 9 N -0.667 5.667 10 C 0.511 3.489 11 O -0.569 6.569 12 C -0.124 4.124 13 C -0.105 4.105 14 C -0.588 4.588 15 S 2.401 3.599 16 O -0.998 6.998 17 O -0.998 6.998 18 C -0.423 4.423 19 C -0.564 4.564 20 H 0.055 0.945 21 C 0.025 3.975 22 N -0.906 5.906 23 Si 0.958 3.042 24 H -0.265 1.265 25 H -0.267 1.267 26 H -0.269 1.269 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.425 0.575 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.167 0.833 42 H 0.167 0.833 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.141 14.283 17.943 29.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.150 4.150 4 C -0.135 4.135 5 C -0.145 4.145 6 C -0.100 4.100 7 C -0.168 4.168 8 C 0.021 3.979 9 N -0.317 5.317 10 C 0.300 3.700 11 O -0.447 6.447 12 C -0.164 4.164 13 C -0.144 4.144 14 C -0.720 4.720 15 S 2.592 3.408 16 O -0.995 6.995 17 O -0.995 6.995 18 C -0.555 4.555 19 C -0.602 4.602 20 H 0.074 0.926 21 C -0.178 4.178 22 N -0.543 5.543 23 Si 0.781 3.219 24 H -0.190 1.190 25 H -0.191 1.191 26 H -0.194 1.194 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.155 0.845 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.265 0.735 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.185 0.815 42 H 0.185 0.815 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 19.002 15.165 16.557 29.414 hybrid contribution -0.735 -0.935 -0.048 1.190 sum 18.267 14.230 16.509 28.438 Atomic orbital electron populations 1.20765 0.91022 1.03402 1.01752 1.20224 0.96685 0.93034 0.99555 1.21207 0.95023 0.97359 1.01397 1.21479 0.93990 0.99226 0.98840 1.21242 1.00982 0.91304 1.00951 1.20312 0.92200 0.97467 1.00003 1.20774 0.99733 0.92858 1.03460 1.17451 0.90486 0.85634 1.04334 1.43263 1.47147 1.19703 1.21589 1.21381 0.79274 0.87669 0.81677 1.90749 1.65790 1.54370 1.33769 1.21701 0.99721 0.95768 0.99241 1.21084 0.98644 0.94891 0.99767 1.30117 1.13599 1.07536 1.20709 1.08147 0.75996 0.77800 0.78829 1.93421 1.63880 1.54742 1.87458 1.93422 1.64320 1.87036 1.54749 1.27587 1.08502 1.14527 1.04928 1.20782 1.28157 1.10267 1.00982 0.92648 1.25749 0.97228 0.95165 0.99674 1.69992 1.39884 1.13416 1.31048 0.85544 0.78504 0.78830 0.79007 1.19035 1.19118 1.19360 0.92792 0.91227 0.90178 0.84533 0.83525 0.83590 0.89134 0.92121 0.90575 0.73511 0.84649 0.84674 0.91394 0.91453 0.81506 0.81517 0.89394 0.89394 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 8.58 71.23 0.61 -1.63 16 2 C -0.09 -1.92 5.59 -19.74 -0.11 -2.03 16 3 C -0.13 -2.31 9.67 22.25 0.22 -2.09 16 4 C -0.12 -1.73 10.04 22.29 0.22 -1.51 16 5 C -0.13 -1.85 9.70 22.25 0.22 -1.64 16 6 C -0.10 -1.63 5.90 -19.74 -0.12 -1.75 16 7 C -0.11 -1.29 9.77 71.24 0.70 -0.59 16 8 C 0.11 2.19 5.53 38.15 0.21 2.41 16 9 N -0.67 -10.35 3.63 -303.51 -1.10 -11.45 16 10 C 0.51 10.87 6.67 87.65 0.58 11.46 16 11 O -0.57 -18.30 14.38 -3.05 -0.04 -18.34 16 12 C -0.12 -1.89 5.70 29.85 0.17 -1.72 16 13 C -0.10 -2.65 4.51 30.59 0.14 -2.51 16 14 C -0.59 -14.10 5.81 71.98 0.42 -13.68 16 15 S 2.40 97.53 4.64 -56.49 -0.26 97.27 16 16 O -1.00 -47.60 18.10 -127.37 -2.31 -49.90 16 17 O -1.00 -47.65 18.10 -127.37 -2.30 -49.96 16 18 C -0.42 -19.84 5.56 71.23 0.40 -19.44 16 19 C -0.56 -32.00 9.13 25.60 0.23 -31.76 16 20 H 0.06 3.21 7.71 -2.91 -0.02 3.19 16 21 C 0.02 1.37 5.46 84.66 0.46 1.83 16 22 N -0.91 -50.89 13.29 21.45 0.28 -50.60 16 23 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 27 H 0.05 1.38 7.15 -2.39 -0.02 1.36 16 28 H 0.07 1.22 7.55 -2.39 -0.02 1.21 16 29 H 0.08 1.28 8.04 -2.38 -0.02 1.26 16 30 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 32 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.78 7.46 -2.39 -0.02 0.77 16 35 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 36 H 0.43 3.29 8.83 -92.71 -0.82 2.47 16 37 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.96 8.10 -2.38 -0.02 1.94 16 40 H 0.07 1.96 8.10 -2.39 -0.02 1.94 16 41 H 0.17 2.89 8.14 -2.39 -0.02 2.87 16 42 H 0.17 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.09 3.96 8.14 -2.39 -0.02 3.94 16 44 H 0.09 3.96 8.14 -2.39 -0.02 3.94 16 45 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 Total: -1.00 -86.40 391.10 0.82 -85.58 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.17 Total: 16.46 kcal Atomic # 6 Polarization: -69.02 SS G_CDS: 4.35 Total: -64.67 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.82 Total: -62.05 kcal Atomic # 8 Polarization: -113.54 SS G_CDS: -4.65 Total: -118.20 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 97.53 SS G_CDS: -0.26 Total: 97.27 kcal Total: -86.40 0.82 -85.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.987 kcal (2) G-P(sol) polarization free energy of solvation -86.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds