Wall clock time and date at job start Sat Apr 11 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38239 * 119.99901 * 179.76875 * 4 3 2 6 6 C 1.38240 * 119.99645 * 0.50240 * 5 4 3 7 7 C 1.50698 * 119.99659 * 179.72727 * 6 5 4 8 8 H 1.08996 * 109.46813 * 160.02550 * 7 6 5 9 9 C 1.53003 * 109.47156 * 280.02259 * 7 6 5 10 10 N 1.46496 * 109.47170 * 40.02325 * 7 6 5 11 11 C 1.34780 * 120.00143 * 154.99888 * 10 7 6 12 12 O 1.21293 * 119.99808 * 0.02562 * 11 10 7 13 13 C 1.50690 * 120.00461 * 179.97438 * 11 10 7 14 14 S 1.81407 * 109.47444 * 180.02562 * 13 11 10 15 15 O 1.42101 * 108.57663 * 294.48835 * 14 13 11 16 16 O 1.42097 * 108.57624 * 65.51150 * 14 13 11 17 17 C 1.81400 * 101.92226 * 180.02562 * 14 13 11 18 18 C 1.50700 * 109.47157 * 179.97438 * 17 14 13 19 19 H 1.08000 * 119.99902 * 359.97438 * 18 17 14 20 20 C 1.37875 * 120.00031 * 179.97438 * 18 17 14 21 21 N 1.31511 * 119.99824 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99881 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47253 * 90.00089 * 22 20 18 24 24 H 1.48506 * 109.46846 * 209.99404 * 22 20 18 25 25 H 1.48494 * 109.47212 * 329.99793 * 22 20 18 26 26 C 1.38227 * 120.00205 * 359.74956 * 6 5 4 27 27 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 33 33 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 34 34 H 1.08001 * 119.99843 * 180.23314 * 5 4 3 35 35 H 1.08996 * 109.47022 * 60.00419 * 9 7 6 36 36 H 1.09000 * 109.47306 * 180.02562 * 9 7 6 37 37 H 1.09000 * 109.47042 * 300.00536 * 9 7 6 38 38 H 0.96999 * 120.00479 * 334.99897 * 10 7 6 39 39 H 1.09005 * 109.47439 * 299.99944 * 13 11 10 40 40 H 1.09002 * 109.47025 * 59.99875 * 13 11 10 41 41 H 1.08995 * 109.47093 * 300.00254 * 17 14 13 42 42 H 1.09002 * 109.47036 * 59.99912 * 17 14 13 43 43 H 0.96995 * 120.00024 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.00251 * 179.97438 * 26 6 5 45 45 H 1.07998 * 120.00407 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7242 3.3755 -1.1972 6 6 2.9545 4.0272 0.0000 7 6 3.4577 5.4477 -0.0001 8 1 3.2478 5.9075 0.9656 9 6 4.9671 5.4541 -0.2506 10 7 2.7839 6.2044 -1.0581 11 6 2.6643 7.5431 -0.9577 12 8 3.1151 8.1214 0.0086 13 6 1.9717 8.3216 -2.0462 14 16 1.9732 10.0856 -1.6228 15 8 1.1759 10.2731 -0.4616 16 8 3.3160 10.5505 -1.6250 17 6 1.1070 10.8122 -3.0414 18 6 1.0110 12.3052 -2.8604 19 1 1.4289 12.7704 -1.9799 20 6 0.3897 13.0773 -3.8190 21 7 0.3056 14.3801 -3.6608 22 14 -0.3337 12.2726 -5.3416 23 1 -1.7475 11.9008 -5.0807 24 1 -0.2742 13.2243 -6.4801 25 1 0.4455 11.0531 -5.6746 26 6 2.7238 3.3757 1.1971 27 6 2.2627 2.0725 1.1971 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.0926 1.5598 -2.1325 34 1 2.9047 3.8844 -2.1326 35 1 5.1770 4.9943 -1.2163 36 1 5.3311 6.4815 -0.2502 37 1 5.4684 4.8910 0.5366 38 1 2.4237 5.7420 -1.8310 39 1 2.4979 8.1743 -2.9894 40 1 0.9440 7.9722 -2.1451 41 1 1.6579 10.5913 -3.9556 42 1 0.1046 10.3897 -3.1103 43 1 -0.1318 14.9233 -4.3350 44 1 2.9042 3.8847 2.1324 45 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:17 Heat of formation + Delta-G solvation = -95.435998 kcal Electronic energy + Delta-G solvation = -26464.240018 eV Core-core repulsion = 22573.651937 eV Total energy + Delta-G solvation = -3890.588081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.50670 -39.43347 -36.34268 -36.05454 -35.05979 -33.99738 -33.23785 -31.89415 -31.31569 -29.96130 -29.51522 -28.73536 -24.84940 -23.32755 -23.18154 -22.58891 -21.02328 -20.42140 -18.15636 -17.86162 -17.30824 -16.88071 -16.12417 -15.92411 -15.81622 -15.41168 -15.25307 -14.90967 -14.78059 -14.31201 -14.19324 -14.00743 -13.78503 -13.66824 -13.52963 -13.47429 -12.92151 -12.70937 -12.52826 -12.37532 -12.29873 -12.01952 -11.78186 -11.59784 -11.55487 -11.24241 -11.14419 -11.09540 -11.08049 -10.87279 -10.53130 -10.37059 -10.17075 -9.83424 -9.42287 -9.33508 -9.29890 -8.91692 -8.82830 -6.29491 -4.37917 0.69994 0.89683 1.01987 2.43310 2.87216 3.13134 3.17956 3.22121 3.36706 3.68705 4.17095 4.21038 4.31879 4.36797 4.41074 4.54195 4.61220 4.68710 4.82097 4.90591 4.95287 5.00074 5.01627 5.05192 5.12759 5.18567 5.23783 5.35450 5.41206 5.45470 5.48315 5.60078 5.61110 5.72132 5.76760 5.95303 6.02061 6.07464 6.14315 6.22717 6.27089 6.32006 6.59782 7.15813 7.19650 7.95140 8.04638 8.65898 9.24215 10.81734 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.002295 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.657600 B =12194.863768 C =13075.016343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.083 4.083 4 C -0.114 4.114 5 C -0.112 4.112 6 C -0.094 4.094 7 C 0.180 3.820 8 H 0.101 0.899 9 C -0.160 4.160 10 N -0.721 5.721 11 C 0.546 3.454 12 O -0.522 6.522 13 C -0.680 4.680 14 S 2.447 3.553 15 O -0.932 6.932 16 O -0.932 6.932 17 C -0.461 4.461 18 C -0.529 4.529 19 H 0.090 0.910 20 C 0.087 3.913 21 N -0.879 5.879 22 Si 0.882 3.118 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.264 1.264 26 C -0.103 4.103 27 C -0.114 4.114 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.402 0.598 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.271 0.729 44 H 0.126 0.874 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.864 -31.244 2.693 31.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.132 4.132 5 C -0.130 4.130 6 C -0.094 4.094 7 C 0.075 3.925 8 H 0.119 0.881 9 C -0.219 4.219 10 N -0.374 5.374 11 C 0.332 3.668 12 O -0.397 6.397 13 C -0.803 4.803 14 S 2.625 3.375 15 O -0.930 6.930 16 O -0.929 6.929 17 C -0.594 4.594 18 C -0.567 4.567 19 H 0.108 0.892 20 C -0.120 4.120 21 N -0.515 5.515 22 Si 0.708 3.292 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.188 1.188 26 C -0.121 4.121 27 C -0.132 4.132 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.237 0.763 39 H 0.173 0.827 40 H 0.173 0.827 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.144 0.856 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.505 -30.320 4.086 30.794 hybrid contribution -0.997 -1.077 -2.111 2.571 sum 2.508 -31.397 1.975 31.559 Atomic orbital electron populations 1.21754 0.94564 1.01795 1.02389 1.20560 0.96318 0.92549 1.02883 1.19945 0.98759 0.96361 0.93217 1.20995 0.99860 0.94673 0.97662 1.20909 0.99782 0.94884 0.97412 1.19909 1.00319 0.95363 0.93847 1.19864 0.92326 0.87447 0.92820 0.88120 1.22191 0.94014 1.03379 1.02267 1.46029 1.60017 1.06684 1.24680 1.19371 0.78755 0.82572 0.86148 1.90865 1.47915 1.68817 1.32151 1.31211 1.10123 1.30694 1.08290 1.07787 0.76539 0.74572 0.78623 1.93491 1.71107 1.82531 1.45835 1.93490 1.35719 1.76388 1.87330 1.28113 1.08393 1.09265 1.13662 1.20106 1.41167 0.85673 1.09785 0.89232 1.24901 0.94557 0.94612 0.97911 1.69863 1.41803 1.04538 1.35312 0.86737 0.80064 0.79809 0.82555 1.19613 1.20607 1.18807 1.21021 0.98698 0.94882 0.97520 1.21024 0.99747 0.94714 0.97676 0.92481 0.92338 0.92464 0.91000 0.91018 0.85968 0.86085 0.92200 0.91053 0.91274 0.76279 0.82708 0.82720 0.89713 0.90140 0.91856 0.85577 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 37.16 0.37 -0.39 16 2 C -0.09 -0.45 6.07 -27.88 -0.17 -0.62 16 3 C -0.08 -0.59 5.13 -104.62 -0.54 -1.12 16 4 C -0.11 -0.81 9.70 -39.58 -0.38 -1.20 16 5 C -0.11 -0.86 9.06 -39.58 -0.36 -1.22 16 6 C -0.09 -0.83 4.95 -104.63 -0.52 -1.35 16 7 C 0.18 1.87 2.78 -69.08 -0.19 1.68 16 8 H 0.10 1.20 7.44 -51.93 -0.39 0.82 16 9 C -0.16 -1.56 9.46 37.16 0.35 -1.21 16 10 N -0.72 -7.95 5.03 -54.94 -0.28 -8.22 16 11 C 0.55 8.35 7.81 -10.99 -0.09 8.27 16 12 O -0.52 -10.31 15.29 2.54 0.04 -10.28 16 13 C -0.68 -9.20 6.29 36.00 0.23 -8.98 16 14 S 2.45 50.61 3.88 -107.50 -0.42 50.19 16 15 O -0.93 -22.60 17.95 -59.52 -1.07 -23.66 16 16 O -0.93 -22.49 17.95 -59.54 -1.07 -23.55 16 17 C -0.46 -9.95 4.63 36.01 0.17 -9.78 16 18 C -0.53 -14.82 9.68 -34.44 -0.33 -15.15 16 19 H 0.09 2.76 7.96 -52.49 -0.42 2.34 16 20 C 0.09 2.43 5.47 -17.82 -0.10 2.33 16 21 N -0.88 -26.20 13.96 55.43 0.77 -25.43 16 22 Si 0.88 19.96 27.47 -169.99 -4.67 15.29 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.26 -5.41 6.54 56.52 0.37 -5.04 16 26 C -0.10 -0.85 9.67 -39.58 -0.38 -1.24 16 27 C -0.11 -0.84 9.70 -39.58 -0.38 -1.23 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 32 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.12 0.73 6.92 -52.49 -0.36 0.37 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.40 3.17 6.87 -40.82 -0.28 2.89 16 39 H 0.15 1.50 8.14 -51.92 -0.42 1.07 16 40 H 0.15 1.52 8.14 -51.92 -0.42 1.10 16 41 H 0.08 1.62 7.20 -51.93 -0.37 1.25 16 42 H 0.08 1.52 7.57 -51.92 -0.39 1.12 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.13 0.91 8.04 -52.49 -0.42 0.49 16 45 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 390.28 15.07 5.88 5.88 Total: -1.00 -38.32 390.28 -10.01 -48.32 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.87 Total: 2.65 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: -2.33 Total: -31.19 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.50 Total: -33.65 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -2.10 Total: -57.49 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.67 Total: 15.29 kcal Atomic # 16 Polarization: 50.61 SS G_CDS: -0.42 Total: 50.19 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.32 -10.01 -48.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.114 kcal (2) G-P(sol) polarization free energy of solvation -38.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds