Wall clock time and date at job start Sat Apr 11 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38239 * 119.99901 * 179.76875 * 4 3 2 6 6 C 1.38240 * 119.99645 * 0.50240 * 5 4 3 7 7 C 1.50698 * 119.99659 * 179.72727 * 6 5 4 8 8 H 1.08996 * 109.46813 * 160.02550 * 7 6 5 9 9 C 1.53003 * 109.47156 * 280.02259 * 7 6 5 10 10 N 1.46496 * 109.47170 * 40.02325 * 7 6 5 11 11 C 1.34780 * 120.00143 * 154.99888 * 10 7 6 12 12 O 1.21293 * 119.99808 * 0.02562 * 11 10 7 13 13 C 1.50690 * 120.00461 * 179.97438 * 11 10 7 14 14 S 1.81407 * 109.47444 * 180.02562 * 13 11 10 15 15 O 1.42101 * 108.57663 * 294.48835 * 14 13 11 16 16 O 1.42097 * 108.57624 * 65.51150 * 14 13 11 17 17 C 1.81400 * 101.92226 * 180.02562 * 14 13 11 18 18 C 1.50700 * 109.47157 * 179.97438 * 17 14 13 19 19 H 1.08000 * 119.99902 * 359.97438 * 18 17 14 20 20 C 1.37875 * 120.00031 * 179.97438 * 18 17 14 21 21 N 1.31511 * 119.99824 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99881 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47253 * 90.00089 * 22 20 18 24 24 H 1.48506 * 109.46846 * 209.99404 * 22 20 18 25 25 H 1.48494 * 109.47212 * 329.99793 * 22 20 18 26 26 C 1.38227 * 120.00205 * 359.74956 * 6 5 4 27 27 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 33 33 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 34 34 H 1.08001 * 119.99843 * 180.23314 * 5 4 3 35 35 H 1.08996 * 109.47022 * 60.00419 * 9 7 6 36 36 H 1.09000 * 109.47306 * 180.02562 * 9 7 6 37 37 H 1.09000 * 109.47042 * 300.00536 * 9 7 6 38 38 H 0.96999 * 120.00479 * 334.99897 * 10 7 6 39 39 H 1.09005 * 109.47439 * 299.99944 * 13 11 10 40 40 H 1.09002 * 109.47025 * 59.99875 * 13 11 10 41 41 H 1.08995 * 109.47093 * 300.00254 * 17 14 13 42 42 H 1.09002 * 109.47036 * 59.99912 * 17 14 13 43 43 H 0.96995 * 120.00024 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.00251 * 179.97438 * 26 6 5 45 45 H 1.07998 * 120.00407 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7242 3.3755 -1.1972 6 6 2.9545 4.0272 0.0000 7 6 3.4577 5.4477 -0.0001 8 1 3.2478 5.9075 0.9656 9 6 4.9671 5.4541 -0.2506 10 7 2.7839 6.2044 -1.0581 11 6 2.6643 7.5431 -0.9577 12 8 3.1151 8.1214 0.0086 13 6 1.9717 8.3216 -2.0462 14 16 1.9732 10.0856 -1.6228 15 8 1.1759 10.2731 -0.4616 16 8 3.3160 10.5505 -1.6250 17 6 1.1070 10.8122 -3.0414 18 6 1.0110 12.3052 -2.8604 19 1 1.4289 12.7704 -1.9799 20 6 0.3897 13.0773 -3.8190 21 7 0.3056 14.3801 -3.6608 22 14 -0.3337 12.2726 -5.3416 23 1 -1.7475 11.9008 -5.0807 24 1 -0.2742 13.2243 -6.4801 25 1 0.4455 11.0531 -5.6746 26 6 2.7238 3.3757 1.1971 27 6 2.2627 2.0725 1.1971 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.0926 1.5598 -2.1325 34 1 2.9047 3.8844 -2.1326 35 1 5.1770 4.9943 -1.2163 36 1 5.3311 6.4815 -0.2502 37 1 5.4684 4.8910 0.5366 38 1 2.4237 5.7420 -1.8310 39 1 2.4979 8.1743 -2.9894 40 1 0.9440 7.9722 -2.1451 41 1 1.6579 10.5913 -3.9556 42 1 0.1046 10.3897 -3.1103 43 1 -0.1318 14.9233 -4.3350 44 1 2.9042 3.8847 2.1324 45 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:16 Heat of formation + Delta-G solvation = -124.840668 kcal Electronic energy + Delta-G solvation = -26465.515100 eV Core-core repulsion = 22573.651937 eV Total energy + Delta-G solvation = -3891.863163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.39475 -40.26271 -37.79927 -37.19855 -36.76788 -35.27283 -34.66668 -32.82515 -31.88281 -31.74524 -30.58578 -29.39613 -25.49871 -25.06416 -23.87841 -23.35431 -21.85635 -21.20900 -19.70068 -19.41631 -18.78625 -17.98551 -17.26238 -17.17226 -16.89268 -16.54999 -16.20218 -16.18768 -15.97460 -15.63476 -15.00484 -14.89000 -14.63350 -14.47982 -14.35639 -14.19788 -14.13279 -14.05545 -13.71079 -13.45941 -13.35479 -12.92472 -12.90648 -12.86205 -12.60075 -12.55337 -12.35530 -12.25633 -12.08265 -11.87062 -11.78610 -11.70314 -11.63600 -11.43674 -11.06342 -10.87715 -10.39890 -9.84434 -9.49633 -8.38721 -6.56085 -0.88049 0.31836 0.47857 1.29371 1.38420 1.44081 1.54743 1.84359 2.19917 2.34094 2.79363 2.92265 3.03601 3.28176 3.48907 3.54603 3.86061 3.94004 4.01599 4.09517 4.16052 4.23475 4.28340 4.38201 4.44264 4.51433 4.56430 4.61351 4.64529 4.69800 4.70807 4.86346 5.04261 5.06866 5.11220 5.16835 5.19127 5.25581 5.29386 5.39577 5.48120 5.63766 5.72713 5.88295 6.06677 6.22383 6.50171 6.94442 7.10710 8.77504 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.002295 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.657600 B =12194.863768 C =13075.016343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.104 4.104 7 C 0.179 3.821 8 H 0.077 0.923 9 C -0.156 4.156 10 N -0.696 5.696 11 C 0.534 3.466 12 O -0.579 6.579 13 C -0.642 4.642 14 S 2.435 3.565 15 O -0.989 6.989 16 O -0.987 6.987 17 C -0.467 4.467 18 C -0.557 4.557 19 H 0.027 0.973 20 C 0.013 3.987 21 N -0.941 5.941 22 Si 0.960 3.040 23 H -0.256 1.256 24 H -0.283 1.283 25 H -0.213 1.213 26 C -0.117 4.117 27 C -0.122 4.122 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.421 0.579 39 H 0.211 0.789 40 H 0.208 0.792 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.275 0.725 44 H 0.126 0.874 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.731 -36.340 -0.801 36.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.136 4.136 5 C -0.131 4.131 6 C -0.105 4.105 7 C 0.075 3.925 8 H 0.095 0.905 9 C -0.214 4.214 10 N -0.350 5.350 11 C 0.320 3.680 12 O -0.460 6.460 13 C -0.772 4.772 14 S 2.622 3.378 15 O -0.986 6.986 16 O -0.984 6.984 17 C -0.600 4.600 18 C -0.595 4.595 19 H 0.046 0.954 20 C -0.187 4.187 21 N -0.579 5.579 22 Si 0.779 3.221 23 H -0.180 1.180 24 H -0.209 1.209 25 H -0.135 1.135 26 C -0.135 4.135 27 C -0.140 4.140 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.261 0.739 39 H 0.228 0.772 40 H 0.225 0.775 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.084 0.916 44 H 0.144 0.856 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.377 -35.396 0.604 35.480 hybrid contribution -0.603 0.381 -0.916 1.161 sum 1.774 -35.014 -0.312 35.061 Atomic orbital electron populations 1.21744 0.94483 1.02338 1.01841 1.20598 0.96277 0.91565 1.03748 1.20241 0.98026 0.97213 0.93144 1.21280 0.99278 0.94573 0.98483 1.21126 0.99249 0.95219 0.97530 1.19757 1.01733 0.94295 0.94708 1.19846 0.92790 0.88294 0.91611 0.90523 1.22147 0.93538 1.02001 1.03727 1.45854 1.58634 1.05233 1.25239 1.19716 0.78597 0.83868 0.85822 1.90872 1.50499 1.70105 1.34489 1.30731 1.14327 1.22364 1.09820 1.07337 0.74922 0.77705 0.77863 1.93425 1.71695 1.85225 1.48242 1.93425 1.37559 1.79673 1.87731 1.28088 1.11416 1.04933 1.15567 1.20408 1.41121 0.89839 1.08145 0.95428 1.26244 0.94785 0.95137 1.02532 1.70058 1.43527 1.07036 1.37241 0.85545 0.80102 0.80280 0.76210 1.18005 1.20908 1.13533 1.21161 0.99192 0.95523 0.97664 1.21223 0.99663 0.94462 0.98657 0.92779 0.91301 0.93240 0.90407 0.89946 0.83963 0.84101 0.90389 0.93709 0.90219 0.73914 0.77232 0.77460 0.85777 0.86053 0.91608 0.85639 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 71.98 0.71 -0.43 16 2 C -0.08 -0.65 6.07 29.85 0.18 -0.47 16 3 C -0.09 -0.99 5.13 -19.87 -0.10 -1.09 16 4 C -0.12 -1.27 9.70 22.27 0.22 -1.05 16 5 C -0.11 -1.33 9.06 22.27 0.20 -1.13 16 6 C -0.10 -1.62 4.95 -19.87 -0.10 -1.72 16 7 C 0.18 3.50 2.78 44.25 0.12 3.63 16 8 H 0.08 1.89 7.44 -2.39 -0.02 1.87 16 9 C -0.16 -2.86 9.46 71.98 0.68 -2.18 16 10 N -0.70 -13.19 5.03 -446.10 -2.24 -15.43 16 11 C 0.53 15.17 7.81 87.65 0.68 15.85 16 12 O -0.58 -23.38 15.29 -0.19 0.00 -23.38 16 13 C -0.64 -14.38 6.29 71.23 0.45 -13.93 16 14 S 2.44 100.32 3.88 -56.49 -0.22 100.10 16 15 O -0.99 -49.92 17.95 -125.76 -2.26 -52.18 16 16 O -0.99 -49.50 17.95 -125.74 -2.26 -51.76 16 17 C -0.47 -19.05 4.63 71.24 0.33 -18.72 16 18 C -0.56 -32.20 9.68 25.60 0.25 -31.95 16 19 H 0.03 1.86 7.96 -2.91 -0.02 1.83 16 20 C 0.01 0.74 5.47 84.65 0.46 1.20 16 21 N -0.94 -58.63 13.96 21.45 0.30 -58.33 16 22 Si 0.96 39.05 27.47 68.60 1.88 40.93 16 23 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 24 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 25 H -0.21 -6.95 6.54 99.48 0.65 -6.30 16 26 C -0.12 -1.81 9.67 22.27 0.22 -1.60 16 27 C -0.12 -1.60 9.70 22.27 0.22 -1.38 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.08 0.51 8.09 -2.39 -0.02 0.49 16 32 H 0.08 0.47 8.08 -2.39 -0.02 0.45 16 33 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.14 1.00 6.92 -2.91 -0.02 0.98 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.42 4.49 6.87 -92.71 -0.64 3.85 16 39 H 0.21 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.21 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.12 4.11 7.20 -2.39 -0.02 4.09 16 42 H 0.12 3.99 7.57 -2.39 -0.02 3.97 16 43 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 44 H 0.13 1.83 8.04 -2.91 -0.02 1.81 16 45 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -95.16 390.28 0.02 -95.13 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.30 Total: 19.89 kcal Atomic # 6 Polarization: -59.50 SS G_CDS: 4.52 Total: -54.98 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -1.94 Total: -73.77 kcal Atomic # 8 Polarization: -122.80 SS G_CDS: -4.52 Total: -127.32 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 1.88 Total: 40.93 kcal Atomic # 16 Polarization: 100.32 SS G_CDS: -0.22 Total: 100.10 kcal Total: -95.16 0.02 -95.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.706 kcal (2) G-P(sol) polarization free energy of solvation -95.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds