Wall clock time and date at job start Sat Apr 11 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38238 * 119.99571 * 269.72634 * 3 2 1 5 5 C 1.38240 * 119.99592 * 179.73993 * 4 3 2 6 6 C 1.38240 * 119.99908 * 0.55508 * 5 4 3 7 7 C 1.50697 * 119.99683 * 179.72243 * 6 5 4 8 8 H 1.09004 * 109.46989 * 199.97770 * 7 6 5 9 9 C 1.52994 * 109.47178 * 79.97653 * 7 6 5 10 10 N 1.46504 * 109.47337 * 319.97370 * 7 6 5 11 11 C 1.34774 * 119.99989 * 205.00399 * 10 7 6 12 12 O 1.21283 * 119.99972 * 359.97438 * 11 10 7 13 13 C 1.50699 * 120.00094 * 180.02562 * 11 10 7 14 14 S 1.81392 * 109.47378 * 179.97438 * 13 11 10 15 15 O 1.42101 * 108.57942 * 294.48764 * 14 13 11 16 16 O 1.42098 * 108.58021 * 65.51149 * 14 13 11 17 17 C 1.81404 * 101.92183 * 179.97438 * 14 13 11 18 18 C 1.50699 * 109.47014 * 180.02562 * 17 14 13 19 19 H 1.08005 * 120.00176 * 359.97438 * 18 17 14 20 20 C 1.37878 * 120.00101 * 180.02562 * 18 17 14 21 21 N 1.31508 * 120.00081 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99799 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47654 * 89.99952 * 22 20 18 24 24 H 1.48500 * 109.47133 * 210.00268 * 22 20 18 25 25 H 1.48503 * 109.46930 * 330.00007 * 22 20 18 26 26 C 1.38232 * 119.99983 * 359.69546 * 6 5 4 27 27 C 1.38234 * 120.00207 * 89.99764 * 3 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 33 33 H 1.07997 * 120.00032 * 359.97438 * 4 3 2 34 34 H 1.07994 * 119.99783 * 180.27281 * 5 4 3 35 35 H 1.09002 * 109.47556 * 179.97438 * 9 7 6 36 36 H 1.09004 * 109.47256 * 299.99953 * 9 7 6 37 37 H 1.09004 * 109.47279 * 59.99724 * 9 7 6 38 38 H 0.96999 * 119.99786 * 25.00579 * 10 7 6 39 39 H 1.08997 * 109.46900 * 299.99862 * 13 11 10 40 40 H 1.09007 * 109.47047 * 59.99330 * 13 11 10 41 41 H 1.08998 * 109.46936 * 299.99657 * 17 14 13 42 42 H 1.09000 * 109.46698 * 59.99972 * 17 14 13 43 43 H 0.97004 * 119.99782 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.00014 * 179.97438 * 26 6 5 45 45 H 1.07999 * 119.99681 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7238 3.3757 -1.1973 6 6 2.9547 4.0272 -0.0001 7 6 3.4574 5.4478 -0.0002 8 1 3.9098 5.6732 0.9656 9 6 2.2884 6.4025 -0.2510 10 7 4.4575 5.6119 -1.0581 11 6 5.3927 6.5772 -0.9575 12 8 5.4060 7.3102 0.0086 13 6 6.4211 6.7463 -2.0460 14 16 7.5298 8.1181 -1.6225 15 8 6.7787 9.3245 -1.6248 16 8 8.2673 7.7623 -0.4612 17 6 8.6604 8.1377 -3.0409 18 6 9.6745 9.2377 -2.8598 19 1 9.6417 9.8629 -1.9797 20 6 10.6434 9.4468 -3.8182 21 7 11.5279 10.4071 -3.6604 22 14 10.6995 8.3661 -5.3408 23 1 9.8644 8.9718 -6.4090 24 1 12.1022 8.2509 -5.8146 25 1 10.1766 7.0163 -5.0093 26 6 2.7238 3.3757 1.1971 27 6 2.2627 2.0726 1.1971 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 2.0927 1.5597 -2.1324 34 1 2.9038 3.8847 -2.1325 35 1 2.6519 7.4301 -0.2506 36 1 1.8360 6.1771 -1.2167 37 1 1.5443 6.2804 0.5362 38 1 4.4466 5.0258 -1.8309 39 1 7.0000 5.8281 -2.1447 40 1 5.9196 6.9628 -2.9893 41 1 9.1737 7.1786 -3.1096 42 1 8.0933 8.3127 -3.9552 43 1 12.2098 10.5539 -4.3346 44 1 2.9046 3.8846 2.1324 45 1 2.0831 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:19 Heat of formation + Delta-G solvation = -124.833807 kcal Electronic energy + Delta-G solvation = -26430.991852 eV Core-core repulsion = 22539.128986 eV Total energy + Delta-G solvation = -3891.862866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.39555 -40.26336 -37.79874 -37.19863 -36.76765 -35.27337 -34.66584 -32.82616 -31.88360 -31.74582 -30.58655 -29.39249 -25.50147 -25.06431 -23.87849 -23.34838 -21.85850 -21.20987 -19.70068 -19.41649 -18.78632 -17.98671 -17.26705 -17.16595 -16.89645 -16.55910 -16.19634 -16.16908 -15.97589 -15.63465 -14.98297 -14.84274 -14.63116 -14.61991 -14.44077 -14.20650 -14.12039 -13.97874 -13.49583 -13.45905 -13.35689 -13.13133 -12.92252 -12.86253 -12.55309 -12.53861 -12.34658 -12.25723 -12.08132 -11.87023 -11.78748 -11.69940 -11.63501 -11.43885 -11.06393 -10.87739 -10.39613 -9.84502 -9.49754 -8.38811 -6.56209 -0.88029 0.31826 0.47840 1.29504 1.38348 1.44045 1.54681 1.84334 2.19929 2.34018 2.79380 2.92203 3.03639 3.28185 3.48984 3.54603 3.85972 3.93745 4.01662 4.09509 4.16041 4.23380 4.28414 4.38236 4.44177 4.51497 4.56763 4.61197 4.64454 4.69640 4.71087 4.86250 5.04422 5.06836 5.11674 5.16816 5.18998 5.25606 5.29313 5.39541 5.48170 5.63729 5.72677 5.88157 6.06640 6.22491 6.50033 6.94533 7.10642 8.77402 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021382 B = 0.002212 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.189562 B =12653.608262 C =13413.012002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.086 4.086 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.104 4.104 7 C 0.179 3.821 8 H 0.077 0.923 9 C -0.156 4.156 10 N -0.696 5.696 11 C 0.534 3.466 12 O -0.579 6.579 13 C -0.642 4.642 14 S 2.435 3.565 15 O -0.987 6.987 16 O -0.988 6.988 17 C -0.467 4.467 18 C -0.557 4.557 19 H 0.027 0.973 20 C 0.014 3.986 21 N -0.941 5.941 22 Si 0.960 3.040 23 H -0.255 1.255 24 H -0.284 1.284 25 H -0.214 1.214 26 C -0.117 4.117 27 C -0.122 4.122 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.421 0.579 39 H 0.208 0.792 40 H 0.211 0.789 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.275 0.725 44 H 0.126 0.874 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.767 -26.995 -0.746 36.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.136 4.136 5 C -0.131 4.131 6 C -0.105 4.105 7 C 0.075 3.925 8 H 0.095 0.905 9 C -0.214 4.214 10 N -0.350 5.350 11 C 0.320 3.680 12 O -0.460 6.460 13 C -0.773 4.773 14 S 2.622 3.378 15 O -0.984 6.984 16 O -0.986 6.986 17 C -0.600 4.600 18 C -0.596 4.596 19 H 0.046 0.954 20 C -0.187 4.187 21 N -0.579 5.579 22 Si 0.778 3.222 23 H -0.179 1.179 24 H -0.209 1.209 25 H -0.136 1.136 26 C -0.135 4.135 27 C -0.140 4.140 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.261 0.739 39 H 0.225 0.775 40 H 0.228 0.772 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.084 0.916 44 H 0.144 0.856 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -24.675 -25.858 0.662 35.748 hybrid contribution 0.646 -0.039 -0.947 1.147 sum -24.028 -25.896 -0.285 35.328 Atomic orbital electron populations 1.21735 0.94270 1.02344 1.01913 1.20602 0.96467 0.91558 1.03668 1.20242 0.98046 0.97177 0.93148 1.21280 0.99299 0.94566 0.98480 1.21125 0.99232 0.95227 0.97532 1.19758 1.01870 0.94161 0.94707 1.19845 0.88560 0.92509 0.91620 0.90510 1.22147 0.97281 0.98271 1.03714 1.45856 1.29672 1.34188 1.25247 1.19712 0.81827 0.80640 0.85819 1.90869 1.74663 1.45938 1.34486 1.30732 1.12894 1.23784 1.09844 1.07336 0.76459 0.76156 0.77880 1.93425 1.72459 1.44791 1.87736 1.93424 1.72238 1.84697 1.48192 1.28088 1.10533 1.05956 1.15420 1.20413 1.14623 1.16322 1.08209 0.95433 1.26241 0.93319 0.96557 1.02538 1.70060 1.17561 1.32993 1.37241 0.85549 0.78495 0.81004 0.77115 1.17905 1.20921 1.13602 1.21161 0.99416 0.95290 0.97665 1.21220 0.99708 0.94424 0.98653 0.91351 0.92711 0.93060 0.90538 0.90063 0.83971 0.84101 0.93702 0.90399 0.90238 0.73909 0.77476 0.77200 0.85879 0.85972 0.91604 0.85634 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 71.98 0.71 -0.31 16 2 C -0.09 -0.66 6.07 29.85 0.18 -0.48 16 3 C -0.09 -0.99 5.13 -19.86 -0.10 -1.09 16 4 C -0.12 -1.27 9.70 22.27 0.22 -1.06 16 5 C -0.11 -1.33 9.06 22.27 0.20 -1.13 16 6 C -0.10 -1.62 4.95 -19.87 -0.10 -1.72 16 7 C 0.18 3.51 2.78 44.24 0.12 3.63 16 8 H 0.08 1.89 7.44 -2.39 -0.02 1.87 16 9 C -0.16 -2.87 9.46 71.98 0.68 -2.19 16 10 N -0.70 -13.18 5.03 -446.10 -2.24 -15.42 16 11 C 0.53 15.16 7.81 87.66 0.68 15.84 16 12 O -0.58 -23.36 15.29 -0.17 0.00 -23.37 16 13 C -0.64 -14.38 6.29 71.24 0.45 -13.93 16 14 S 2.44 100.35 3.88 -56.49 -0.22 100.13 16 15 O -0.99 -49.52 17.95 -125.74 -2.26 -51.78 16 16 O -0.99 -49.90 17.95 -125.76 -2.26 -52.16 16 17 C -0.47 -19.07 4.63 71.24 0.33 -18.74 16 18 C -0.56 -32.25 9.68 25.60 0.25 -32.00 16 19 H 0.03 1.85 7.96 -2.91 -0.02 1.83 16 20 C 0.01 0.77 5.47 84.66 0.46 1.23 16 21 N -0.94 -58.63 13.96 21.45 0.30 -58.33 16 22 Si 0.96 39.05 27.47 68.60 1.88 40.93 16 23 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.21 -7.00 6.54 99.48 0.65 -6.35 16 26 C -0.12 -1.81 9.67 22.27 0.22 -1.60 16 27 C -0.12 -1.60 9.70 22.27 0.22 -1.39 16 28 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.41 8.14 -2.38 -0.02 0.40 16 31 H 0.08 0.53 8.09 -2.39 -0.02 0.51 16 32 H 0.08 0.49 8.08 -2.39 -0.02 0.47 16 33 H 0.14 0.93 8.06 -2.91 -0.02 0.90 16 34 H 0.14 1.00 6.92 -2.91 -0.02 0.98 16 35 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.42 4.47 6.87 -92.71 -0.64 3.84 16 39 H 0.21 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.21 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.12 4.11 7.20 -2.39 -0.02 4.09 16 42 H 0.12 4.00 7.57 -2.39 -0.02 3.98 16 43 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 44 H 0.13 1.83 8.04 -2.91 -0.02 1.80 16 45 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -95.14 390.29 0.02 -95.12 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.30 Total: 19.80 kcal Atomic # 6 Polarization: -59.44 SS G_CDS: 4.52 Total: -54.92 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -1.94 Total: -73.75 kcal Atomic # 8 Polarization: -122.79 SS G_CDS: -4.52 Total: -127.30 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 1.88 Total: 40.93 kcal Atomic # 16 Polarization: 100.35 SS G_CDS: -0.22 Total: 100.13 kcal Total: -95.14 0.02 -95.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.718 kcal (2) G-P(sol) polarization free energy of solvation -95.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds