Wall clock time and date at job start Sat Apr 11 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47019 * 2 1 4 4 C 1.52998 * 109.46859 * 240.00147 * 2 1 3 5 5 C 1.50695 * 109.47078 * 119.99700 * 2 1 3 6 6 C 1.38136 * 120.03741 * 358.55058 * 5 2 1 7 7 C 1.38266 * 120.06866 * 179.97438 * 6 5 2 8 8 C 1.38294 * 120.14303 * 0.02562 * 7 6 5 9 9 C 1.38089 * 120.07322 * 359.75065 * 8 7 6 10 10 C 1.38853 * 120.03619 * 178.52205 * 5 2 1 11 11 N 1.39929 * 120.06573 * 359.97438 * 10 5 2 12 12 C 1.34782 * 119.99894 * 185.51007 * 11 10 5 13 13 O 1.21294 * 119.99803 * 353.99491 * 12 11 10 14 14 C 1.50690 * 120.00188 * 173.71216 * 12 11 10 15 15 S 1.81400 * 109.47539 * 180.27835 * 14 12 11 16 16 O 1.42103 * 108.57711 * 294.49223 * 15 14 12 17 17 O 1.42103 * 108.57864 * 65.51114 * 15 14 12 18 18 C 1.81397 * 101.92597 * 180.02562 * 15 14 12 19 19 C 1.50696 * 109.47327 * 180.02562 * 18 15 14 20 20 H 1.08005 * 119.99790 * 359.97438 * 19 18 15 21 21 C 1.37877 * 119.99826 * 179.97438 * 19 18 15 22 22 N 1.31513 * 119.99587 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00383 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47229 * 89.99569 * 23 21 19 25 25 H 1.48497 * 109.47329 * 210.00041 * 23 21 19 26 26 H 1.48503 * 109.46817 * 330.00324 * 23 21 19 27 27 H 1.08998 * 109.46951 * 299.99725 * 1 2 3 28 28 H 1.08996 * 109.47096 * 60.00033 * 1 2 3 29 29 H 1.09002 * 109.47205 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47192 * 173.92945 * 3 2 1 31 31 H 1.09003 * 109.47120 * 293.92976 * 3 2 1 32 32 H 1.09004 * 109.47434 * 53.92341 * 3 2 1 33 33 H 1.09003 * 109.47284 * 305.36140 * 4 2 1 34 34 H 1.08996 * 109.47458 * 65.36789 * 4 2 1 35 35 H 1.09004 * 109.46786 * 185.36967 * 4 2 1 36 36 H 1.07994 * 119.96328 * 359.96989 * 6 5 2 37 37 H 1.08006 * 119.92319 * 180.02562 * 7 6 5 38 38 H 1.08004 * 119.96412 * 179.97438 * 8 7 6 39 39 H 1.08002 * 120.04108 * 180.27411 * 9 8 7 40 40 H 0.96997 * 120.00177 * 5.51810 * 11 10 5 41 41 H 1.09000 * 109.47240 * 300.27932 * 14 12 11 42 42 H 1.08998 * 109.46997 * 60.27674 * 14 12 11 43 43 H 1.09001 * 109.46914 * 299.99961 * 18 15 14 44 44 H 1.08996 * 109.47017 * 59.99695 * 18 15 14 45 45 H 0.96999 * 120.00001 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2305 6 6 1.1357 -1.2093 2.1553 7 6 1.5959 -1.8616 3.2842 8 6 2.9544 -2.0162 3.4916 9 6 3.8558 -1.5238 2.5687 10 6 3.3970 -0.8645 1.4356 11 7 4.3078 -0.3612 0.5001 12 6 5.6252 -0.6074 0.6424 13 8 6.0331 -1.1705 1.6362 14 6 6.5908 -0.1887 -0.4361 15 16 8.2750 -0.6631 0.0425 16 8 8.6471 0.0861 1.1912 17 8 8.3512 -2.0814 0.0847 18 6 9.2466 -0.0732 -1.3712 19 6 10.7031 -0.3877 -1.1460 20 1 11.0133 -0.8917 -0.2425 21 6 11.6396 -0.0321 -2.0933 22 7 12.9107 -0.3062 -1.8965 23 14 11.1031 0.8389 -3.6563 24 1 11.1298 2.3076 -3.4386 25 1 12.0284 0.4854 -4.7626 26 1 9.7241 0.4160 -4.0100 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1246 1.4444 0.1087 31 1 1.7681 1.9240 -0.9394 32 1 1.5906 1.9868 0.8306 33 1 1.6003 -1.7174 -1.2986 34 1 1.7573 -0.1549 -2.1366 35 1 3.1258 -0.8053 -1.2025 36 1 0.0743 -1.0896 1.9964 37 1 0.8928 -2.2511 4.0056 38 1 3.3107 -2.5259 4.3747 39 1 4.9165 -1.6488 2.7290 40 1 3.9910 0.1649 -0.2507 41 1 6.3266 -0.6816 -1.3717 42 1 6.5415 0.8921 -0.5683 43 1 8.9044 -0.5692 -2.2795 44 1 9.1191 1.0042 -1.4755 45 1 13.5696 -0.0563 -2.5631 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:23 Heat of formation + Delta-G solvation = -59.987109 kcal Electronic energy + Delta-G solvation = -27694.606791 eV Core-core repulsion = 23805.555889 eV Total energy + Delta-G solvation = -3889.050902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.39685 -39.24973 -36.68340 -36.15411 -35.24298 -34.99993 -33.28410 -31.42349 -30.24475 -29.86984 -28.80356 -27.89293 -27.70523 -23.37490 -23.19781 -22.74924 -21.02502 -19.92510 -18.28177 -17.82799 -17.47076 -17.27383 -16.31202 -16.20218 -15.57478 -15.46591 -14.99572 -14.90217 -14.69120 -14.57531 -14.25215 -14.09380 -13.96423 -13.56557 -13.49153 -12.75490 -12.71631 -12.67208 -12.57234 -12.36078 -12.28524 -12.13638 -11.82009 -11.64740 -11.40113 -11.23682 -11.19040 -11.18707 -10.93780 -10.91042 -10.83345 -10.63834 -10.35342 -9.91124 -9.58263 -9.40693 -8.89563 -8.86601 -8.16327 -6.33261 -4.42314 0.58990 1.09197 1.31105 2.28729 2.66552 3.10172 3.14646 3.19484 3.55260 3.68901 4.05731 4.17502 4.21090 4.33940 4.41342 4.56186 4.63360 4.83229 4.85683 4.90073 4.99123 5.07789 5.12984 5.14249 5.23412 5.25289 5.29907 5.36181 5.42363 5.45250 5.50685 5.58406 5.72257 5.79279 5.87811 5.95426 6.07708 6.12073 6.20312 6.27790 6.36943 6.51306 6.95278 7.13601 7.14512 7.73192 8.00467 8.61601 9.20074 10.77912 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019515 B = 0.002927 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.429979 B = 9565.182557 C =10631.764492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.031 4.031 3 C -0.151 4.151 4 C -0.155 4.155 5 C -0.112 4.112 6 C -0.101 4.101 7 C -0.144 4.144 8 C -0.100 4.100 9 C -0.166 4.166 10 C 0.154 3.846 11 N -0.661 5.661 12 C 0.543 3.457 13 O -0.497 6.497 14 C -0.684 4.684 15 S 2.444 3.556 16 O -0.929 6.929 17 O -0.929 6.929 18 C -0.458 4.458 19 C -0.531 4.531 20 H 0.090 0.910 21 C 0.088 3.912 22 N -0.878 5.878 23 Si 0.882 3.118 24 H -0.270 1.270 25 H -0.280 1.280 26 H -0.263 1.263 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.186 0.814 40 H 0.416 0.584 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.562 2.896 0.664 27.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.031 4.031 3 C -0.209 4.209 4 C -0.212 4.212 5 C -0.114 4.114 6 C -0.119 4.119 7 C -0.163 4.163 8 C -0.119 4.119 9 C -0.185 4.185 10 C 0.059 3.941 11 N -0.309 5.309 12 C 0.331 3.669 13 O -0.373 6.373 14 C -0.806 4.806 15 S 2.621 3.379 16 O -0.927 6.927 17 O -0.926 6.926 18 C -0.592 4.592 19 C -0.569 4.569 20 H 0.108 0.892 21 C -0.119 4.119 22 N -0.514 5.514 23 Si 0.708 3.292 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.188 1.188 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.202 0.798 40 H 0.260 0.740 41 H 0.177 0.823 42 H 0.177 0.823 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -26.835 2.109 1.989 26.991 hybrid contribution -0.787 1.202 -2.059 2.510 sum -27.622 3.310 -0.069 27.820 Atomic orbital electron populations 1.21913 0.93507 1.02170 1.02069 1.19487 0.96505 0.94644 0.92484 1.22102 1.00945 0.95081 1.02768 1.22140 1.01368 1.01175 0.96519 1.19431 0.90941 1.03297 0.97775 1.20894 0.99177 0.98119 0.93738 1.21144 0.95840 1.01191 0.98149 1.21198 0.92902 0.98767 0.98986 1.22832 1.04941 0.98201 0.92492 1.17775 0.88081 0.97640 0.90613 1.44119 1.05880 1.52892 1.28051 1.19636 0.82561 0.78262 0.86457 1.90504 1.77133 1.40582 1.29096 1.31306 1.26688 1.14024 1.08593 1.07955 0.74875 0.76213 0.78845 1.93502 1.79167 1.73577 1.46412 1.93503 1.83934 1.28109 1.87071 1.28093 1.10705 1.07000 1.13402 1.20092 0.85782 1.42407 1.08626 0.89192 1.24892 0.94459 0.94492 0.98044 1.69860 1.00895 1.45053 1.35585 0.86746 0.79226 0.80438 0.82810 1.19559 1.20544 1.18800 0.92089 0.92220 0.92076 0.92612 0.91616 0.91678 0.91730 0.91683 0.92310 0.85460 0.86273 0.85736 0.79798 0.74014 0.82282 0.82328 0.89614 0.90038 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 7.13 37.16 0.27 -0.56 16 2 C -0.03 -0.23 0.75 -155.66 -0.12 -0.35 16 3 C -0.15 -1.05 8.17 37.16 0.30 -0.75 16 4 C -0.15 -1.12 8.16 37.16 0.30 -0.81 16 5 C -0.11 -1.14 4.77 -104.43 -0.50 -1.64 16 6 C -0.10 -0.95 8.97 -39.61 -0.36 -1.30 16 7 C -0.14 -1.43 10.04 -39.55 -0.40 -1.82 16 8 C -0.10 -1.17 10.04 -39.62 -0.40 -1.57 16 9 C -0.17 -2.35 9.06 -39.39 -0.36 -2.70 16 10 C 0.15 1.95 6.20 -83.69 -0.52 1.43 16 11 N -0.66 -7.86 3.76 -9.86 -0.04 -7.90 16 12 C 0.54 8.18 7.79 -10.99 -0.09 8.10 16 13 O -0.50 -9.35 12.02 2.54 0.03 -9.32 16 14 C -0.68 -8.86 6.29 36.00 0.23 -8.63 16 15 S 2.44 48.97 3.88 -107.50 -0.42 48.55 16 16 O -0.93 -21.79 17.95 -59.53 -1.07 -22.86 16 17 O -0.93 -21.84 17.95 -59.53 -1.07 -22.91 16 18 C -0.46 -9.63 4.63 36.00 0.17 -9.47 16 19 C -0.53 -14.61 9.68 -34.44 -0.33 -14.94 16 20 H 0.09 2.73 7.96 -52.48 -0.42 2.31 16 21 C 0.09 2.43 5.47 -17.82 -0.10 2.33 16 22 N -0.88 -25.86 13.96 55.43 0.77 -25.08 16 23 Si 0.88 19.60 27.47 -169.99 -4.67 14.93 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.26 -5.29 6.54 56.52 0.37 -4.92 16 27 H 0.06 0.34 7.44 -51.93 -0.39 -0.04 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.35 7.58 -51.93 -0.39 -0.04 16 30 H 0.06 0.42 5.21 -51.93 -0.27 0.15 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.46 5.06 -51.93 -0.26 0.19 16 36 H 0.13 0.90 5.89 -52.49 -0.31 0.59 16 37 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 38 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.19 3.05 4.51 -56.33 -0.25 2.80 16 40 H 0.42 3.67 3.70 -40.82 -0.15 3.52 16 41 H 0.16 1.45 8.14 -51.92 -0.42 1.02 16 42 H 0.16 1.41 8.14 -51.92 -0.42 0.98 16 43 H 0.09 1.59 7.20 -51.92 -0.37 1.22 16 44 H 0.08 1.48 7.57 -51.93 -0.39 1.09 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -36.94 368.44 -8.98 -45.92 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.18 Total: 5.81 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: -1.89 Total: -32.69 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.74 Total: -32.98 kcal Atomic # 8 Polarization: -52.98 SS G_CDS: -2.11 Total: -55.09 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.67 Total: 14.93 kcal Atomic # 16 Polarization: 48.97 SS G_CDS: -0.42 Total: 48.55 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.94 -8.98 -45.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.063 kcal (2) G-P(sol) polarization free energy of solvation -36.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds