Wall clock time and date at job start Sat Apr 11 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47019 * 2 1 4 4 C 1.52998 * 109.46859 * 240.00147 * 2 1 3 5 5 C 1.50695 * 109.47078 * 119.99700 * 2 1 3 6 6 C 1.38136 * 120.03741 * 358.55058 * 5 2 1 7 7 C 1.38266 * 120.06866 * 179.97438 * 6 5 2 8 8 C 1.38294 * 120.14303 * 0.02562 * 7 6 5 9 9 C 1.38089 * 120.07322 * 359.75065 * 8 7 6 10 10 C 1.38853 * 120.03619 * 178.52205 * 5 2 1 11 11 N 1.39929 * 120.06573 * 359.97438 * 10 5 2 12 12 C 1.34782 * 119.99894 * 185.51007 * 11 10 5 13 13 O 1.21294 * 119.99803 * 353.99491 * 12 11 10 14 14 C 1.50690 * 120.00188 * 173.71216 * 12 11 10 15 15 S 1.81400 * 109.47539 * 180.27835 * 14 12 11 16 16 O 1.42103 * 108.57711 * 294.49223 * 15 14 12 17 17 O 1.42103 * 108.57864 * 65.51114 * 15 14 12 18 18 C 1.81397 * 101.92597 * 180.02562 * 15 14 12 19 19 C 1.50696 * 109.47327 * 180.02562 * 18 15 14 20 20 H 1.08005 * 119.99790 * 359.97438 * 19 18 15 21 21 C 1.37877 * 119.99826 * 179.97438 * 19 18 15 22 22 N 1.31513 * 119.99587 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00383 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47229 * 89.99569 * 23 21 19 25 25 H 1.48497 * 109.47329 * 210.00041 * 23 21 19 26 26 H 1.48503 * 109.46817 * 330.00324 * 23 21 19 27 27 H 1.08998 * 109.46951 * 299.99725 * 1 2 3 28 28 H 1.08996 * 109.47096 * 60.00033 * 1 2 3 29 29 H 1.09002 * 109.47205 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47192 * 173.92945 * 3 2 1 31 31 H 1.09003 * 109.47120 * 293.92976 * 3 2 1 32 32 H 1.09004 * 109.47434 * 53.92341 * 3 2 1 33 33 H 1.09003 * 109.47284 * 305.36140 * 4 2 1 34 34 H 1.08996 * 109.47458 * 65.36789 * 4 2 1 35 35 H 1.09004 * 109.46786 * 185.36967 * 4 2 1 36 36 H 1.07994 * 119.96328 * 359.96989 * 6 5 2 37 37 H 1.08006 * 119.92319 * 180.02562 * 7 6 5 38 38 H 1.08004 * 119.96412 * 179.97438 * 8 7 6 39 39 H 1.08002 * 120.04108 * 180.27411 * 9 8 7 40 40 H 0.96997 * 120.00177 * 5.51810 * 11 10 5 41 41 H 1.09000 * 109.47240 * 300.27932 * 14 12 11 42 42 H 1.08998 * 109.46997 * 60.27674 * 14 12 11 43 43 H 1.09001 * 109.46914 * 299.99961 * 18 15 14 44 44 H 1.08996 * 109.47017 * 59.99695 * 18 15 14 45 45 H 0.96999 * 120.00001 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2305 6 6 1.1357 -1.2093 2.1553 7 6 1.5959 -1.8616 3.2842 8 6 2.9544 -2.0162 3.4916 9 6 3.8558 -1.5238 2.5687 10 6 3.3970 -0.8645 1.4356 11 7 4.3078 -0.3612 0.5001 12 6 5.6252 -0.6074 0.6424 13 8 6.0331 -1.1705 1.6362 14 6 6.5908 -0.1887 -0.4361 15 16 8.2750 -0.6631 0.0425 16 8 8.6471 0.0861 1.1912 17 8 8.3512 -2.0814 0.0847 18 6 9.2466 -0.0732 -1.3712 19 6 10.7031 -0.3877 -1.1460 20 1 11.0133 -0.8917 -0.2425 21 6 11.6396 -0.0321 -2.0933 22 7 12.9107 -0.3062 -1.8965 23 14 11.1031 0.8389 -3.6563 24 1 11.1298 2.3076 -3.4386 25 1 12.0284 0.4854 -4.7626 26 1 9.7241 0.4160 -4.0100 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1246 1.4444 0.1087 31 1 1.7681 1.9240 -0.9394 32 1 1.5906 1.9868 0.8306 33 1 1.6003 -1.7174 -1.2986 34 1 1.7573 -0.1549 -2.1366 35 1 3.1258 -0.8053 -1.2025 36 1 0.0743 -1.0896 1.9964 37 1 0.8928 -2.2511 4.0056 38 1 3.3107 -2.5259 4.3747 39 1 4.9165 -1.6488 2.7290 40 1 3.9910 0.1649 -0.2507 41 1 6.3266 -0.6816 -1.3717 42 1 6.5415 0.8921 -0.5683 43 1 8.9044 -0.5692 -2.2795 44 1 9.1191 1.0042 -1.4755 45 1 13.5696 -0.0563 -2.5631 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:22 Heat of formation + Delta-G solvation = -87.977025 kcal Electronic energy + Delta-G solvation = -27695.820525 eV Core-core repulsion = 23805.555889 eV Total energy + Delta-G solvation = -3890.264636 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.33753 -40.19744 -37.86056 -37.37923 -36.86911 -36.04646 -35.28237 -32.51389 -31.74014 -31.02142 -29.77182 -28.37691 -28.18884 -25.17986 -24.03729 -23.77284 -22.04279 -20.69129 -19.75890 -19.38817 -18.64335 -18.54938 -17.44689 -17.21527 -17.19107 -16.75793 -16.42511 -16.06524 -15.70333 -15.46928 -15.20910 -15.01477 -14.79828 -14.64535 -14.37292 -14.34878 -14.20125 -13.64790 -13.47333 -13.30204 -12.98330 -12.96634 -12.94419 -12.91919 -12.60800 -12.56146 -12.50287 -12.29374 -11.93694 -11.92077 -11.80194 -11.79291 -11.67962 -11.56642 -11.13021 -10.88521 -10.65265 -9.73894 -9.05208 -8.39553 -6.57425 -0.95982 0.19376 0.44404 1.25032 1.38320 1.44021 1.54575 1.63541 2.10782 2.33567 2.83921 2.89545 2.91180 3.21862 3.28088 3.58694 3.77992 3.92639 4.06023 4.09457 4.15652 4.20858 4.29548 4.41420 4.44747 4.51379 4.57361 4.61299 4.64605 4.81429 4.85880 4.96695 5.00655 5.03555 5.11656 5.22960 5.27266 5.27839 5.38943 5.39983 5.46790 5.57467 5.65075 5.87169 6.07827 6.21351 6.48935 6.72370 7.09691 8.76712 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019515 B = 0.002927 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.429979 B = 9565.182557 C =10631.764492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.153 4.153 4 C -0.157 4.157 5 C -0.106 4.106 6 C -0.101 4.101 7 C -0.140 4.140 8 C -0.116 4.116 9 C -0.201 4.201 10 C 0.132 3.868 11 N -0.639 5.639 12 C 0.528 3.472 13 O -0.547 6.547 14 C -0.647 4.647 15 S 2.435 3.565 16 O -0.984 6.984 17 O -0.985 6.985 18 C -0.465 4.465 19 C -0.558 4.558 20 H 0.028 0.972 21 C 0.015 3.985 22 N -0.941 5.941 23 Si 0.959 3.041 24 H -0.255 1.255 25 H -0.284 1.284 26 H -0.213 1.213 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.158 0.842 37 H 0.147 0.853 38 H 0.130 0.870 39 H 0.154 0.846 40 H 0.432 0.568 41 H 0.213 0.787 42 H 0.215 0.785 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.746 5.270 -2.900 33.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 C -0.210 4.210 4 C -0.214 4.214 5 C -0.108 4.108 6 C -0.119 4.119 7 C -0.158 4.158 8 C -0.134 4.134 9 C -0.220 4.220 10 C 0.037 3.963 11 N -0.289 5.289 12 C 0.317 3.683 13 O -0.427 6.427 14 C -0.777 4.777 15 S 2.621 3.379 16 O -0.982 6.982 17 O -0.982 6.982 18 C -0.599 4.599 19 C -0.596 4.596 20 H 0.046 0.954 21 C -0.185 4.185 22 N -0.579 5.579 23 Si 0.777 3.223 24 H -0.179 1.179 25 H -0.209 1.209 26 H -0.135 1.135 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.175 0.825 37 H 0.164 0.836 38 H 0.148 0.852 39 H 0.171 0.829 40 H 0.279 0.721 41 H 0.230 0.770 42 H 0.232 0.768 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -31.995 4.468 -1.553 32.343 hybrid contribution 0.681 0.417 -0.826 1.149 sum -31.314 4.886 -2.379 31.782 Atomic orbital electron populations 1.21920 0.91995 1.02618 1.03047 1.19590 0.97729 0.94685 0.91160 1.22134 1.00385 0.94632 1.03889 1.22177 1.00817 1.01253 0.97156 1.19820 0.89764 1.02356 0.98880 1.21330 1.00625 0.96905 0.93002 1.21483 0.95201 1.00292 0.98855 1.21350 0.93851 0.99248 0.98990 1.22701 1.04016 1.00631 0.94652 1.17923 0.89262 0.98525 0.90548 1.43923 1.04567 1.52188 1.28201 1.20031 0.83881 0.78103 0.86331 1.90560 1.78094 1.42896 1.31122 1.30846 1.18992 1.18081 1.09765 1.07408 0.77512 0.74830 0.78166 1.93437 1.81967 1.73930 1.48825 1.93437 1.86171 1.31003 1.87561 1.28078 1.06568 1.09995 1.15222 1.20393 0.90157 1.42192 1.06889 0.95378 1.26229 0.94094 0.95270 1.02939 1.70056 1.02939 1.47261 1.37604 0.85565 0.81215 0.79344 0.76146 1.17888 1.20938 1.13460 0.91702 0.90763 0.91892 0.93320 0.89411 0.92009 0.92312 0.89454 0.93001 0.82482 0.83557 0.85234 0.82947 0.72051 0.76986 0.76834 0.85653 0.85786 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 7.13 71.98 0.51 -0.52 16 2 C -0.03 -0.35 0.75 -52.93 -0.04 -0.39 16 3 C -0.15 -1.49 8.17 71.98 0.59 -0.90 16 4 C -0.16 -1.61 8.16 71.98 0.59 -1.02 16 5 C -0.11 -1.89 4.77 -19.74 -0.09 -1.98 16 6 C -0.10 -1.60 8.97 22.25 0.20 -1.40 16 7 C -0.14 -2.51 10.04 22.29 0.22 -2.29 16 8 C -0.12 -2.77 10.04 22.25 0.22 -2.55 16 9 C -0.20 -5.95 9.06 22.39 0.20 -5.75 16 10 C 0.13 3.23 6.20 38.15 0.24 3.47 16 11 N -0.64 -13.86 3.76 -303.49 -1.14 -15.01 16 12 C 0.53 15.33 7.79 87.65 0.68 16.01 16 13 O -0.55 -21.69 12.02 -0.20 0.00 -21.70 16 14 C -0.65 -14.31 6.29 71.23 0.45 -13.86 16 15 S 2.43 98.54 3.88 -56.49 -0.22 98.32 16 16 O -0.98 -48.68 17.95 -125.75 -2.26 -50.94 16 17 O -0.98 -48.81 17.95 -125.75 -2.26 -51.07 16 18 C -0.47 -18.62 4.63 71.23 0.33 -18.29 16 19 C -0.56 -31.86 9.68 25.60 0.25 -31.61 16 20 H 0.03 1.87 7.96 -2.91 -0.02 1.85 16 21 C 0.01 0.84 5.47 84.65 0.46 1.30 16 22 N -0.94 -58.18 13.96 21.45 0.30 -57.88 16 23 Si 0.96 38.41 27.47 68.60 1.88 40.30 16 24 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 25 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.21 -6.78 6.54 99.48 0.65 -6.13 16 27 H 0.06 0.45 7.44 -2.39 -0.02 0.43 16 28 H 0.07 0.37 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.46 7.58 -2.39 -0.02 0.44 16 30 H 0.05 0.54 5.21 -2.39 -0.01 0.52 16 31 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.05 0.60 5.06 -2.39 -0.01 0.58 16 36 H 0.16 1.54 5.89 -2.91 -0.02 1.53 16 37 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 38 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16 39 H 0.15 5.60 4.51 -63.74 -0.29 5.31 16 40 H 0.43 5.97 3.70 -92.71 -0.34 5.63 16 41 H 0.21 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.21 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.13 4.05 7.20 -2.39 -0.02 4.04 16 44 H 0.12 3.95 7.57 -2.39 -0.02 3.93 16 45 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -93.92 368.44 1.46 -92.46 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.34 Total: 25.30 kcal Atomic # 6 Polarization: -64.60 SS G_CDS: 4.81 Total: -59.79 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -0.84 Total: -72.88 kcal Atomic # 8 Polarization: -119.19 SS G_CDS: -4.52 Total: -123.70 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 1.88 Total: 40.30 kcal Atomic # 16 Polarization: 98.54 SS G_CDS: -0.22 Total: 98.32 kcal Total: -93.92 1.46 -92.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.480 kcal (2) G-P(sol) polarization free energy of solvation -93.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds