Wall clock time and date at job start Sat Apr 11 2020 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38258 * 120.00363 * 2 1 4 4 C 1.38203 * 120.00069 * 180.27961 * 3 2 1 5 5 C 1.38255 * 120.00131 * 359.74912 * 4 3 2 6 6 C 1.38216 * 119.99974 * 359.97438 * 5 4 3 7 7 C 1.38219 * 119.99837 * 179.75751 * 2 1 3 8 8 C 1.50695 * 119.99931 * 359.97438 * 7 2 1 9 9 C 1.52999 * 109.47378 * 277.17685 * 8 7 2 10 10 H 1.09009 * 109.47294 * 55.76833 * 9 8 7 11 11 C 1.53002 * 109.47516 * 175.77256 * 9 8 7 12 12 N 1.46501 * 109.47182 * 295.77265 * 9 8 7 13 13 C 1.34777 * 120.00430 * 154.69986 * 12 9 8 14 14 O 1.21285 * 119.99779 * 0.02562 * 13 12 9 15 15 C 1.50695 * 120.00388 * 179.97438 * 13 12 9 16 16 S 1.81397 * 109.47408 * 180.02562 * 15 13 12 17 17 O 1.42108 * 108.57717 * 294.48935 * 16 15 13 18 18 O 1.42099 * 108.57873 * 65.51224 * 16 15 13 19 19 C 1.81401 * 101.92182 * 180.02562 * 16 15 13 20 20 C 1.50709 * 109.47105 * 180.02562 * 19 16 15 21 21 H 1.08003 * 119.99636 * 359.97438 * 20 19 16 22 22 C 1.37875 * 119.99775 * 179.97438 * 20 19 16 23 23 N 1.31520 * 119.99588 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00127 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47311 * 90.00266 * 24 22 20 26 26 H 1.48502 * 109.47014 * 209.99951 * 24 22 20 27 27 H 1.48495 * 109.47224 * 330.00038 * 24 22 20 28 28 H 1.09003 * 109.46743 * 265.94897 * 1 2 3 29 29 H 1.08999 * 109.47128 * 25.94214 * 1 2 3 30 30 H 1.08994 * 109.47481 * 145.95157 * 1 2 3 31 31 H 1.08005 * 119.99823 * 0.04886 * 3 2 1 32 32 H 1.08004 * 120.00168 * 179.77452 * 4 3 2 33 33 H 1.08002 * 120.00575 * 179.97438 * 5 4 3 34 34 H 1.07999 * 119.99976 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.47226 * 157.17583 * 8 7 2 36 36 H 1.09001 * 109.47718 * 37.17502 * 8 7 2 37 37 H 1.09002 * 109.47089 * 179.97438 * 11 9 8 38 38 H 1.09001 * 109.46786 * 299.99869 * 11 9 8 39 39 H 1.08997 * 109.47059 * 59.99883 * 11 9 8 40 40 H 0.97001 * 119.99927 * 334.70744 * 12 9 8 41 41 H 1.09002 * 109.47045 * 300.00529 * 15 13 12 42 42 H 1.09001 * 109.46949 * 60.00245 * 15 13 12 43 43 H 1.08998 * 109.46998 * 299.99558 * 19 16 15 44 44 H 1.09001 * 109.47193 * 60.00032 * 19 16 15 45 45 H 0.97001 * 119.99850 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 -0.0058 5 6 4.2717 -0.0001 -0.0064 6 6 3.5806 -1.1971 -0.0007 7 6 2.1981 -1.1970 0.0051 8 6 1.4446 -2.5020 0.0112 9 6 1.0340 -2.8473 1.4441 10 1 0.4581 -2.0233 1.8656 11 6 0.1793 -4.1163 1.4381 12 7 2.2333 -3.0701 2.2554 13 6 2.1885 -2.8842 3.5896 14 8 1.1552 -2.5328 4.1185 15 6 3.4220 -3.1140 4.4242 16 16 3.0429 -2.7839 6.1672 17 8 2.7438 -1.4022 6.3116 18 8 2.1007 -3.7484 6.6161 19 6 4.6368 -3.1163 6.9668 20 6 4.5110 -2.8897 8.4515 21 1 3.5666 -2.5767 8.8717 22 6 5.6014 -3.0821 9.2730 23 7 5.4914 -2.8848 10.5687 24 14 7.2344 -3.6242 8.5460 25 1 8.0346 -2.4281 8.1796 26 1 7.9787 -4.4299 9.5471 27 1 6.9883 -4.4455 7.3337 28 1 -0.3633 -0.0726 1.0251 29 1 -0.3633 0.9241 -0.4496 30 1 -0.3634 -0.8514 -0.5753 31 1 1.6584 2.1327 0.0008 32 1 4.1205 2.1325 -0.0095 33 1 5.3517 -0.0002 -0.0114 34 1 4.1205 -2.1324 -0.0016 35 1 2.0830 -3.2921 -0.3842 36 1 0.5535 -2.4101 -0.6098 37 1 -0.1128 -4.3624 2.4590 38 1 -0.7130 -3.9504 0.8344 39 1 0.7551 -4.9402 1.0166 40 1 3.0596 -3.3514 1.8324 41 1 3.7483 -4.1481 4.3132 42 1 4.2155 -2.4449 4.0916 43 1 4.9280 -4.1500 6.7809 44 1 5.3943 -2.4465 6.5596 45 1 6.2586 -3.0198 11.1466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905266422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:33 Heat of formation + Delta-G solvation = -95.784371 kcal Electronic energy + Delta-G solvation = -27384.137214 eV Core-core repulsion = 23493.534026 eV Total energy + Delta-G solvation = -3890.603188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.37200 -39.42738 -36.36018 -36.04154 -35.04373 -33.40801 -33.22850 -32.38768 -31.29609 -29.90172 -29.31490 -27.62290 -26.41677 -23.22578 -22.59767 -22.08503 -20.91256 -20.58854 -18.03865 -17.52985 -17.29830 -16.76864 -16.50781 -15.89425 -15.73551 -15.39110 -15.24507 -15.07620 -14.69105 -14.24114 -14.13833 -13.95106 -13.66973 -13.39535 -13.28522 -12.85350 -12.71027 -12.69615 -12.52655 -12.44919 -12.33901 -12.24937 -12.04343 -11.59210 -11.30346 -11.18385 -11.13336 -11.08360 -11.01742 -10.86834 -10.51517 -10.34404 -10.11115 -9.82197 -9.32587 -9.30688 -9.02977 -8.82412 -8.79105 -6.29166 -4.37562 0.72024 1.10849 1.15416 2.49718 2.93715 3.13409 3.18287 3.22315 3.49779 3.70091 4.21427 4.29610 4.37366 4.48833 4.56321 4.60708 4.68344 4.75543 4.86279 4.90508 4.96164 5.01985 5.05884 5.17100 5.25930 5.29660 5.35406 5.36806 5.43131 5.46030 5.49667 5.57068 5.74534 5.81296 5.94784 6.01386 6.14739 6.21748 6.27112 6.27569 6.30660 6.41446 6.78075 7.19925 7.23037 8.02404 8.05107 8.66156 9.24589 10.82123 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015042 B = 0.003004 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.006883 B = 9317.589200 C =10105.753901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 C -0.117 4.117 4 C -0.119 4.119 5 C -0.124 4.124 6 C -0.114 4.114 7 C -0.084 4.084 8 C -0.090 4.090 9 C 0.143 3.857 10 H 0.094 0.906 11 C -0.167 4.167 12 N -0.717 5.717 13 C 0.547 3.453 14 O -0.524 6.524 15 C -0.680 4.680 16 S 2.446 3.554 17 O -0.933 6.933 18 O -0.933 6.933 19 C -0.461 4.461 20 C -0.529 4.529 21 H 0.090 0.910 22 C 0.087 3.913 23 N -0.880 5.880 24 Si 0.882 3.118 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.263 1.263 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.400 0.600 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 1.099 -28.172 28.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.080 4.080 3 C -0.135 4.135 4 C -0.137 4.137 5 C -0.142 4.142 6 C -0.132 4.132 7 C -0.084 4.084 8 C -0.127 4.127 9 C 0.039 3.961 10 H 0.112 0.888 11 C -0.225 4.225 12 N -0.370 5.370 13 C 0.332 3.668 14 O -0.400 6.400 15 C -0.803 4.803 16 S 2.624 3.376 17 O -0.930 6.930 18 O -0.930 6.930 19 C -0.595 4.595 20 C -0.567 4.567 21 H 0.108 0.892 22 C -0.119 4.119 23 N -0.516 5.516 24 Si 0.708 3.292 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.188 1.188 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.235 0.765 41 H 0.172 0.828 42 H 0.172 0.828 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.580 1.613 -27.332 27.759 hybrid contribution 2.397 -0.649 -0.935 2.653 sum -2.183 0.964 -28.266 28.367 Atomic orbital electron populations 1.20901 0.91246 1.02724 1.02837 1.19778 0.96091 0.92662 0.99498 1.21051 0.94350 0.97494 1.00629 1.21147 0.94349 0.98171 1.00022 1.21124 0.99894 0.92564 1.00580 1.20983 0.93432 0.98075 1.00685 1.19626 0.93679 0.94292 1.00844 1.20966 1.01003 0.94528 0.96230 1.21005 0.86465 0.98906 0.89750 0.88754 1.22223 0.99703 0.97172 1.03408 1.45891 1.14106 1.70364 1.06624 1.19315 0.88149 0.76622 0.82748 1.90853 1.31795 1.45746 1.71571 1.31193 1.06436 1.13198 1.29515 1.07798 0.79383 0.75703 0.74746 1.93492 1.83740 1.32490 1.83247 1.93487 1.59201 1.63240 1.77095 1.28119 1.15482 1.06215 1.09666 1.20110 1.00656 1.50155 0.85803 0.89248 1.24897 0.98820 0.93680 0.94537 1.69869 1.31522 1.46761 1.03409 0.86740 0.83466 0.79437 0.79552 1.19587 1.20582 1.18802 0.90657 0.91577 0.91220 0.86081 0.86113 0.86101 0.86316 0.90378 0.88931 0.91331 0.91409 0.92294 0.76550 0.82790 0.82829 0.89720 0.90146 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.12 36.01 0.33 -0.59 16 2 C -0.08 -0.76 5.88 -104.62 -0.62 -1.37 16 3 C -0.12 -1.11 9.69 -39.59 -0.38 -1.50 16 4 C -0.12 -1.10 10.05 -39.59 -0.40 -1.49 16 5 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 6 C -0.11 -0.97 9.52 -39.59 -0.38 -1.35 16 7 C -0.08 -0.75 4.85 -104.63 -0.51 -1.26 16 8 C -0.09 -0.63 4.38 -27.89 -0.12 -0.75 16 9 C 0.14 1.39 2.55 -67.93 -0.17 1.21 16 10 H 0.09 1.13 6.77 -51.92 -0.35 0.78 16 11 C -0.17 -1.47 9.49 37.16 0.35 -1.12 16 12 N -0.72 -7.77 4.72 -53.80 -0.25 -8.02 16 13 C 0.55 8.51 7.82 -10.99 -0.09 8.42 16 14 O -0.52 -10.54 15.28 2.55 0.04 -10.51 16 15 C -0.68 -9.52 6.29 36.00 0.23 -9.29 16 16 S 2.45 51.81 3.88 -107.50 -0.42 51.39 16 17 O -0.93 -23.07 17.95 -59.52 -1.07 -24.14 16 18 O -0.93 -22.94 17.95 -59.53 -1.07 -24.01 16 19 C -0.46 -10.12 4.63 36.01 0.17 -9.96 16 20 C -0.53 -14.96 9.68 -34.44 -0.33 -15.29 16 21 H 0.09 2.78 7.96 -52.48 -0.42 2.36 16 22 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 23 N -0.88 -26.34 13.96 55.43 0.77 -25.56 16 24 Si 0.88 20.06 27.47 -169.99 -4.67 15.39 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.26 -5.44 6.54 56.52 0.37 -5.07 16 28 H 0.07 0.65 7.75 -51.93 -0.40 0.25 16 29 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 30 H 0.07 0.42 6.24 -51.93 -0.32 0.10 16 31 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 33 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.12 0.75 8.05 -52.49 -0.42 0.33 16 35 H 0.08 0.42 8.03 -51.93 -0.42 0.00 16 36 H 0.09 0.52 6.32 -51.93 -0.33 0.19 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.40 3.04 8.50 -40.82 -0.35 2.70 16 41 H 0.15 1.55 8.14 -51.92 -0.42 1.13 16 42 H 0.15 1.60 8.14 -51.92 -0.42 1.18 16 43 H 0.08 1.65 7.20 -51.92 -0.37 1.27 16 44 H 0.08 1.54 7.57 -51.92 -0.39 1.15 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 387.05 15.07 5.83 5.83 Total: -1.00 -39.24 387.05 -9.99 -49.23 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.75 Total: 3.87 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: -2.42 Total: -33.47 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.52 Total: -33.59 kcal Atomic # 8 Polarization: -56.56 SS G_CDS: -2.10 Total: -58.66 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.67 Total: 15.39 kcal Atomic # 16 Polarization: 51.81 SS G_CDS: -0.42 Total: 51.39 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.24 -9.99 -49.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.554 kcal (2) G-P(sol) polarization free energy of solvation -39.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds