Wall clock time and date at job start Sat Apr 11 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38258 * 120.00363 * 2 1 4 4 C 1.38203 * 120.00069 * 180.27961 * 3 2 1 5 5 C 1.38255 * 120.00131 * 359.74912 * 4 3 2 6 6 C 1.38216 * 119.99974 * 359.97438 * 5 4 3 7 7 C 1.38219 * 119.99837 * 179.75751 * 2 1 3 8 8 C 1.50695 * 119.99931 * 359.97438 * 7 2 1 9 9 C 1.52999 * 109.47378 * 277.17685 * 8 7 2 10 10 H 1.09009 * 109.47294 * 55.76833 * 9 8 7 11 11 C 1.53002 * 109.47516 * 175.77256 * 9 8 7 12 12 N 1.46501 * 109.47182 * 295.77265 * 9 8 7 13 13 C 1.34777 * 120.00430 * 154.69986 * 12 9 8 14 14 O 1.21285 * 119.99779 * 0.02562 * 13 12 9 15 15 C 1.50695 * 120.00388 * 179.97438 * 13 12 9 16 16 S 1.81397 * 109.47408 * 180.02562 * 15 13 12 17 17 O 1.42108 * 108.57717 * 294.48935 * 16 15 13 18 18 O 1.42099 * 108.57873 * 65.51224 * 16 15 13 19 19 C 1.81401 * 101.92182 * 180.02562 * 16 15 13 20 20 C 1.50709 * 109.47105 * 180.02562 * 19 16 15 21 21 H 1.08003 * 119.99636 * 359.97438 * 20 19 16 22 22 C 1.37875 * 119.99775 * 179.97438 * 20 19 16 23 23 N 1.31520 * 119.99588 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00127 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47311 * 90.00266 * 24 22 20 26 26 H 1.48502 * 109.47014 * 209.99951 * 24 22 20 27 27 H 1.48495 * 109.47224 * 330.00038 * 24 22 20 28 28 H 1.09003 * 109.46743 * 265.94897 * 1 2 3 29 29 H 1.08999 * 109.47128 * 25.94214 * 1 2 3 30 30 H 1.08994 * 109.47481 * 145.95157 * 1 2 3 31 31 H 1.08005 * 119.99823 * 0.04886 * 3 2 1 32 32 H 1.08004 * 120.00168 * 179.77452 * 4 3 2 33 33 H 1.08002 * 120.00575 * 179.97438 * 5 4 3 34 34 H 1.07999 * 119.99976 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.47226 * 157.17583 * 8 7 2 36 36 H 1.09001 * 109.47718 * 37.17502 * 8 7 2 37 37 H 1.09002 * 109.47089 * 179.97438 * 11 9 8 38 38 H 1.09001 * 109.46786 * 299.99869 * 11 9 8 39 39 H 1.08997 * 109.47059 * 59.99883 * 11 9 8 40 40 H 0.97001 * 119.99927 * 334.70744 * 12 9 8 41 41 H 1.09002 * 109.47045 * 300.00529 * 15 13 12 42 42 H 1.09001 * 109.46949 * 60.00245 * 15 13 12 43 43 H 1.08998 * 109.46998 * 299.99558 * 19 16 15 44 44 H 1.09001 * 109.47193 * 60.00032 * 19 16 15 45 45 H 0.97001 * 119.99850 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 -0.0058 5 6 4.2717 -0.0001 -0.0064 6 6 3.5806 -1.1971 -0.0007 7 6 2.1981 -1.1970 0.0051 8 6 1.4446 -2.5020 0.0112 9 6 1.0340 -2.8473 1.4441 10 1 0.4581 -2.0233 1.8656 11 6 0.1793 -4.1163 1.4381 12 7 2.2333 -3.0701 2.2554 13 6 2.1885 -2.8842 3.5896 14 8 1.1552 -2.5328 4.1185 15 6 3.4220 -3.1140 4.4242 16 16 3.0429 -2.7839 6.1672 17 8 2.7438 -1.4022 6.3116 18 8 2.1007 -3.7484 6.6161 19 6 4.6368 -3.1163 6.9668 20 6 4.5110 -2.8897 8.4515 21 1 3.5666 -2.5767 8.8717 22 6 5.6014 -3.0821 9.2730 23 7 5.4914 -2.8848 10.5687 24 14 7.2344 -3.6242 8.5460 25 1 8.0346 -2.4281 8.1796 26 1 7.9787 -4.4299 9.5471 27 1 6.9883 -4.4455 7.3337 28 1 -0.3633 -0.0726 1.0251 29 1 -0.3633 0.9241 -0.4496 30 1 -0.3634 -0.8514 -0.5753 31 1 1.6584 2.1327 0.0008 32 1 4.1205 2.1325 -0.0095 33 1 5.3517 -0.0002 -0.0114 34 1 4.1205 -2.1324 -0.0016 35 1 2.0830 -3.2921 -0.3842 36 1 0.5535 -2.4101 -0.6098 37 1 -0.1128 -4.3624 2.4590 38 1 -0.7130 -3.9504 0.8344 39 1 0.7551 -4.9402 1.0166 40 1 3.0596 -3.3514 1.8324 41 1 3.7483 -4.1481 4.3132 42 1 4.2155 -2.4449 4.0916 43 1 4.9280 -4.1500 6.7809 44 1 5.3943 -2.4465 6.5596 45 1 6.2586 -3.0198 11.1466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905266422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:32 Heat of formation + Delta-G solvation = -126.483466 kcal Electronic energy + Delta-G solvation = -27385.468426 eV Core-core repulsion = 23493.534026 eV Total energy + Delta-G solvation = -3891.934400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27643 -40.27428 -37.82155 -37.26293 -36.78962 -35.28504 -34.16399 -33.17172 -32.14880 -31.73728 -30.41607 -28.22439 -27.02149 -25.15085 -23.45727 -22.78396 -21.84517 -21.34556 -19.69040 -19.36781 -18.59426 -17.76580 -17.31088 -17.19052 -17.09898 -16.73850 -16.24868 -16.10842 -15.94400 -15.77837 -15.03910 -14.78615 -14.67979 -14.62435 -14.22897 -14.04771 -13.93082 -13.65272 -13.47339 -13.35399 -13.26595 -13.04188 -12.94649 -12.88740 -12.82518 -12.72896 -12.56061 -12.27242 -11.99413 -11.86588 -11.79616 -11.78195 -11.62642 -11.35764 -11.07023 -10.88664 -10.26141 -9.66232 -9.43264 -8.39854 -6.57578 -0.89526 0.46959 0.52115 1.35272 1.37699 1.43533 1.54244 1.89764 2.19330 2.33421 2.86031 2.90972 3.02729 3.25931 3.53964 3.75100 3.89785 3.98002 4.00754 4.10492 4.17370 4.26392 4.31563 4.39606 4.41818 4.42731 4.56383 4.62049 4.71544 4.75400 4.80649 4.85991 4.94280 4.97947 5.03655 5.21871 5.27348 5.31312 5.36268 5.40636 5.61904 5.66577 5.78254 5.87073 6.18068 6.30633 6.48497 7.03961 7.09448 8.76559 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015042 B = 0.003004 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.006883 B = 9317.589200 C =10105.753901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.100 4.100 3 C -0.139 4.139 4 C -0.135 4.135 5 C -0.135 4.135 6 C -0.118 4.118 7 C -0.096 4.096 8 C -0.079 4.079 9 C 0.139 3.861 10 H 0.064 0.936 11 C -0.163 4.163 12 N -0.691 5.691 13 C 0.532 3.468 14 O -0.583 6.583 15 C -0.643 4.643 16 S 2.431 3.569 17 O -0.990 6.990 18 O -0.988 6.988 19 C -0.467 4.467 20 C -0.558 4.558 21 H 0.027 0.973 22 C 0.015 3.985 23 N -0.941 5.941 24 Si 0.960 3.040 25 H -0.255 1.255 26 H -0.282 1.282 27 H -0.214 1.214 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.139 0.861 34 H 0.148 0.852 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.033 0.967 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.421 0.579 41 H 0.210 0.790 42 H 0.205 0.795 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.294 -1.119 -32.960 32.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.100 4.100 3 C -0.157 4.157 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.136 4.136 7 C -0.096 4.096 8 C -0.116 4.116 9 C 0.035 3.965 10 H 0.082 0.918 11 C -0.221 4.221 12 N -0.344 5.344 13 C 0.318 3.682 14 O -0.464 6.464 15 C -0.773 4.773 16 S 2.618 3.382 17 O -0.987 6.987 18 O -0.985 6.985 19 C -0.600 4.600 20 C -0.596 4.596 21 H 0.045 0.955 22 C -0.186 4.186 23 N -0.579 5.579 24 Si 0.778 3.222 25 H -0.179 1.179 26 H -0.208 1.208 27 H -0.136 1.136 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.052 0.948 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.260 0.740 41 H 0.227 0.773 42 H 0.222 0.778 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.221 -0.599 -32.103 32.132 hybrid contribution 1.251 0.098 0.468 1.340 sum 0.030 -0.501 -31.635 31.639 Atomic orbital electron populations 1.20904 0.90653 1.03903 1.02109 1.20087 0.96891 0.93221 0.99814 1.21291 0.94966 0.98055 1.01416 1.21420 0.94437 0.99236 1.00224 1.21450 1.00981 0.92584 1.00311 1.21362 0.93372 0.99136 0.99715 1.19908 0.94280 0.94707 1.00720 1.20946 1.02098 0.94360 0.94188 1.21112 0.85976 0.98448 0.90961 0.91777 1.22192 1.00783 0.97360 1.01792 1.45741 1.15509 1.68207 1.04967 1.19642 0.87736 0.76511 0.84330 1.90860 1.33974 1.48690 1.72870 1.30711 1.07321 1.18000 1.21298 1.07410 0.78854 0.74025 0.77873 1.93424 1.84493 1.34975 1.85819 1.93421 1.61030 1.63791 1.80280 1.28088 1.17094 1.09355 1.05443 1.20404 0.98696 1.50532 0.90017 0.95507 1.26242 1.04280 0.93278 0.94755 1.70062 1.33394 1.48642 1.05785 0.85549 0.76226 0.80081 0.80315 1.17921 1.20761 1.13560 0.92348 0.90938 0.89511 0.85720 0.85167 0.84340 0.83403 0.87470 0.87400 0.94822 0.89521 0.89952 0.74025 0.77293 0.77789 0.85764 0.86100 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 9.12 71.24 0.65 -1.11 16 2 C -0.10 -1.78 5.88 -19.86 -0.12 -1.90 16 3 C -0.14 -2.58 9.69 22.27 0.22 -2.37 16 4 C -0.14 -2.32 10.05 22.27 0.22 -2.09 16 5 C -0.14 -2.01 10.05 22.27 0.22 -1.79 16 6 C -0.12 -1.54 9.52 22.27 0.21 -1.33 16 7 C -0.10 -1.42 4.85 -19.87 -0.10 -1.52 16 8 C -0.08 -0.78 4.38 29.85 0.13 -0.65 16 9 C 0.14 2.35 2.55 44.99 0.11 2.46 16 10 H 0.06 1.52 6.77 -2.38 -0.02 1.50 16 11 C -0.16 -2.48 9.49 71.98 0.68 -1.80 16 12 N -0.69 -12.30 4.72 -442.52 -2.09 -14.39 16 13 C 0.53 15.28 7.82 87.66 0.69 15.97 16 14 O -0.58 -23.94 15.28 -0.17 0.00 -23.94 16 15 C -0.64 -14.97 6.29 71.23 0.45 -14.52 16 16 S 2.43 102.90 3.88 -56.49 -0.22 102.68 16 17 O -0.99 -51.23 17.95 -125.76 -2.26 -53.48 16 18 O -0.99 -50.62 17.95 -125.74 -2.26 -52.87 16 19 C -0.47 -19.42 4.63 71.24 0.33 -19.09 16 20 C -0.56 -32.61 9.68 25.60 0.25 -32.36 16 21 H 0.03 1.82 7.96 -2.91 -0.02 1.80 16 22 C 0.01 0.83 5.47 84.65 0.46 1.29 16 23 N -0.94 -58.89 13.96 21.45 0.30 -58.59 16 24 Si 0.96 39.19 27.47 68.60 1.88 41.07 16 25 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 26 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.21 -7.00 6.54 99.48 0.65 -6.35 16 28 H 0.06 1.05 7.75 -2.39 -0.02 1.03 16 29 H 0.07 0.92 8.06 -2.39 -0.02 0.90 16 30 H 0.09 0.91 6.24 -2.39 -0.01 0.90 16 31 H 0.12 2.02 8.06 -2.91 -0.02 1.99 16 32 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.15 0.97 8.05 -2.91 -0.02 0.94 16 35 H 0.11 0.50 8.03 -2.39 -0.02 0.48 16 36 H 0.11 0.79 6.32 -2.39 -0.02 0.77 16 37 H 0.03 0.75 8.14 -2.39 -0.02 0.74 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.42 3.80 8.50 -92.71 -0.79 3.01 16 41 H 0.21 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.20 2.80 8.14 -2.39 -0.02 2.78 16 43 H 0.12 4.20 7.20 -2.39 -0.02 4.18 16 44 H 0.12 4.08 7.57 -2.39 -0.02 4.06 16 45 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -98.76 387.05 -0.07 -98.83 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.15 Total: 21.49 kcal Atomic # 6 Polarization: -65.22 SS G_CDS: 4.41 Total: -60.80 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -1.79 Total: -72.97 kcal Atomic # 8 Polarization: -125.78 SS G_CDS: -4.52 Total: -130.30 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 1.88 Total: 41.07 kcal Atomic # 16 Polarization: 102.90 SS G_CDS: -0.22 Total: 102.68 kcal Total: -98.76 -0.07 -98.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.654 kcal (2) G-P(sol) polarization free energy of solvation -98.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds