Wall clock time and date at job start Sat Apr 11 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99407 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00052 * 359.96186 * 5 4 3 7 7 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 8 8 C 1.50695 * 119.99818 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47313 * 84.99738 * 8 7 2 10 10 H 1.08995 * 109.47165 * 304.99824 * 9 8 7 11 11 C 1.53003 * 109.46857 * 184.99476 * 9 8 7 12 12 N 1.46503 * 109.46734 * 65.00164 * 9 8 7 13 13 C 1.34781 * 119.99288 * 204.99976 * 12 9 8 14 14 O 1.21272 * 120.00379 * 359.97438 * 13 12 9 15 15 C 1.50701 * 119.99819 * 179.97438 * 13 12 9 16 16 S 1.81394 * 109.47344 * 179.97438 * 15 13 12 17 17 O 1.42094 * 108.58082 * 294.48960 * 16 15 13 18 18 O 1.42106 * 108.57835 * 65.51301 * 16 15 13 19 19 C 1.81401 * 101.92122 * 180.02562 * 16 15 13 20 20 C 1.50704 * 109.46922 * 180.02562 * 19 16 15 21 21 H 1.08000 * 120.00137 * 359.97438 * 20 19 16 22 22 C 1.37875 * 119.99783 * 180.02562 * 20 19 16 23 23 N 1.31512 * 120.00118 * 359.97438 * 22 20 19 24 24 Si 1.86810 * 119.99869 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47027 * 59.99453 * 24 22 20 26 26 H 1.48496 * 109.47132 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46818 * 299.99459 * 24 22 20 28 28 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 31 31 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 32 32 H 1.07996 * 120.00197 * 179.97438 * 4 3 2 33 33 H 1.07999 * 119.99661 * 179.97438 * 5 4 3 34 34 H 1.08005 * 119.99954 * 180.02562 * 6 5 4 35 35 H 1.09007 * 109.46764 * 204.99790 * 8 7 2 36 36 H 1.09000 * 109.47236 * 324.99456 * 8 7 2 37 37 H 1.09003 * 109.46959 * 180.02562 * 11 9 8 38 38 H 1.08995 * 109.47517 * 300.00132 * 11 9 8 39 39 H 1.09000 * 109.47123 * 60.00354 * 11 9 8 40 40 H 0.96999 * 120.00432 * 24.99895 * 12 9 8 41 41 H 1.09003 * 109.47028 * 300.00390 * 15 13 12 42 42 H 1.09002 * 109.47328 * 59.99813 * 15 13 12 43 43 H 1.09003 * 109.46930 * 299.99767 * 19 16 15 44 44 H 1.08993 * 109.46970 * 60.00444 * 19 16 15 45 45 H 0.97006 * 119.99517 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0008 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0116 9 6 1.0812 -2.8875 -1.4238 10 1 0.5317 -2.0705 -1.8913 11 6 0.2102 -4.1453 -1.4090 12 7 2.3058 -3.1504 -2.1837 13 6 2.3096 -3.0121 -3.5244 14 8 1.2993 -2.6705 -4.1016 15 6 3.5694 -3.2820 -4.3061 16 16 3.2550 -3.0116 -6.0720 17 8 2.3200 -3.9836 -6.5194 18 8 2.9744 -1.6336 -6.2761 19 6 4.8724 -3.3872 -6.8024 20 6 4.8012 -3.2120 -8.2976 21 1 3.8754 -2.9058 -8.7619 22 6 5.9176 -3.4437 -9.0727 23 7 7.0448 -3.8171 -8.5073 24 14 5.8292 -3.2273 -10.9261 25 1 5.4566 -1.8252 -11.2435 26 1 7.1533 -3.5346 -11.5241 27 1 4.8076 -4.1494 -11.4839 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.6583 2.1327 -0.0004 32 1 4.1204 2.1327 0.0001 33 1 5.3517 0.0000 0.0005 34 1 4.1206 -2.1323 0.0012 35 1 2.0694 -3.2804 0.4497 36 1 0.5337 -2.3930 0.6002 37 1 -0.0483 -4.4202 -2.4316 38 1 0.7597 -4.9623 -0.9414 39 1 -0.7009 -3.9498 -0.8436 40 1 3.1138 -3.4240 -1.7220 41 1 4.3573 -2.6080 -3.9695 42 1 3.8818 -4.3141 -4.1469 43 1 5.6220 -2.7101 -6.3929 44 1 5.1461 -4.4162 -6.5695 45 1 7.8303 -3.9797 -9.0527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905266424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:35 Heat of formation + Delta-G solvation = -100.535466 kcal Electronic energy + Delta-G solvation = -27303.502739 eV Core-core repulsion = 23412.693528 eV Total energy + Delta-G solvation = -3890.809211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.31621 -39.36875 -36.30319 -35.91616 -34.93038 -33.38621 -33.31694 -32.32656 -31.22791 -29.44493 -28.91659 -27.57858 -26.38469 -23.59683 -22.62220 -22.04260 -20.86514 -20.52942 -17.95024 -17.44252 -16.94435 -16.68019 -16.39494 -15.79934 -15.70455 -15.35317 -15.22647 -14.92632 -14.58689 -14.26511 -14.13738 -13.90543 -13.55456 -13.35189 -13.23910 -12.79228 -12.69788 -12.47800 -12.40654 -12.27540 -12.18070 -12.12566 -11.97923 -11.38400 -11.25875 -11.15027 -11.02518 -10.97331 -10.97019 -10.85183 -10.61043 -10.34844 -10.07009 -9.79025 -9.24725 -9.07923 -8.98595 -8.74834 -8.69311 -6.32673 -4.41691 0.89351 1.14974 1.19589 2.57849 3.01683 3.27014 3.28202 3.34392 3.53881 3.83560 4.24627 4.36775 4.45792 4.53458 4.65270 4.69821 4.72580 4.79453 4.94505 4.98860 5.04243 5.04961 5.10268 5.21640 5.32550 5.38848 5.40592 5.46762 5.47877 5.50444 5.52733 5.60239 5.79357 5.85217 5.98075 6.05484 6.26520 6.31748 6.35530 6.45863 6.63119 6.67086 6.82242 7.30105 7.49815 7.75372 8.09985 8.60248 9.25358 10.79311 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016540 B = 0.002796 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.467760 B =10013.227539 C =10776.740623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.081 4.081 3 C -0.118 4.118 4 C -0.119 4.119 5 C -0.123 4.123 6 C -0.112 4.112 7 C -0.084 4.084 8 C -0.090 4.090 9 C 0.144 3.856 10 H 0.093 0.907 11 C -0.167 4.167 12 N -0.718 5.718 13 C 0.547 3.453 14 O -0.526 6.526 15 C -0.677 4.677 16 S 2.423 3.577 17 O -0.943 6.943 18 O -0.942 6.942 19 C -0.407 4.407 20 C -0.529 4.529 21 H 0.073 0.927 22 C 0.075 3.925 23 N -0.883 5.883 24 Si 0.906 3.094 25 H -0.269 1.269 26 H -0.282 1.282 27 H -0.269 1.269 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.400 0.600 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 3.255 23.410 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.081 4.081 3 C -0.136 4.136 4 C -0.137 4.137 5 C -0.141 4.141 6 C -0.130 4.130 7 C -0.084 4.084 8 C -0.128 4.128 9 C 0.039 3.961 10 H 0.111 0.889 11 C -0.225 4.225 12 N -0.371 5.371 13 C 0.332 3.668 14 O -0.402 6.402 15 C -0.800 4.800 16 S 2.603 3.397 17 O -0.940 6.940 18 O -0.939 6.939 19 C -0.542 4.542 20 C -0.568 4.568 21 H 0.091 0.909 22 C -0.131 4.131 23 N -0.520 5.520 24 Si 0.732 3.268 25 H -0.194 1.194 26 H -0.208 1.208 27 H -0.194 1.194 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.235 0.765 41 H 0.171 0.829 42 H 0.171 0.829 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.777 3.716 22.672 24.255 hybrid contribution 1.536 -0.306 -0.083 1.568 sum -6.242 3.410 22.589 23.682 Atomic orbital electron populations 1.20906 0.91292 1.02719 1.02806 1.19766 0.96056 0.92670 0.99604 1.21034 0.94347 0.97463 1.00768 1.21147 0.94335 0.98169 1.00047 1.21133 0.99950 0.92550 1.00468 1.20988 0.93441 0.98107 1.00511 1.19630 0.93691 0.94274 1.00845 1.20980 1.01114 0.94471 0.96219 1.20984 0.85903 0.98574 0.90604 0.88863 1.22222 0.99556 0.97347 1.03366 1.45910 1.14124 1.70603 1.06428 1.19382 0.88215 0.76500 0.82707 1.90835 1.34188 1.46095 1.69068 1.31162 1.05368 1.12759 1.30687 1.08487 0.80615 0.75667 0.74905 1.93462 1.60955 1.62632 1.76951 1.93469 1.84908 1.33191 1.82341 1.27613 1.12330 1.06975 1.07236 1.20333 0.98679 1.50044 0.87721 0.90902 1.24927 0.94682 0.93616 0.99841 1.69937 1.01153 1.44318 1.36565 0.86403 0.77655 0.79540 0.83228 1.19353 1.20758 1.19353 0.90717 0.91594 0.91198 0.86133 0.86123 0.86043 0.86291 0.90349 0.88926 0.91360 0.92284 0.91469 0.76536 0.82911 0.82868 0.89668 0.89665 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.41 36.01 0.34 -0.61 16 2 C -0.08 -0.79 5.88 -104.62 -0.62 -1.41 16 3 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 4 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 5 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 6 C -0.11 -1.03 9.33 -39.59 -0.37 -1.40 16 7 C -0.08 -0.79 4.89 -104.63 -0.51 -1.30 16 8 C -0.09 -0.67 4.39 -27.89 -0.12 -0.80 16 9 C 0.14 1.47 2.56 -67.93 -0.17 1.30 16 10 H 0.09 1.17 7.37 -51.93 -0.38 0.79 16 11 C -0.17 -1.55 9.48 37.16 0.35 -1.20 16 12 N -0.72 -8.29 4.66 -53.80 -0.25 -8.54 16 13 C 0.55 8.95 7.81 -10.98 -0.09 8.86 16 14 O -0.53 -10.94 15.29 2.56 0.04 -10.90 16 15 C -0.68 -10.24 6.29 36.01 0.23 -10.01 16 16 S 2.42 53.12 3.88 -107.50 -0.42 52.71 16 17 O -0.94 -23.63 17.95 -59.52 -1.07 -24.70 16 18 O -0.94 -23.77 17.95 -59.53 -1.07 -24.84 16 19 C -0.41 -9.63 5.56 36.01 0.20 -9.43 16 20 C -0.53 -14.78 9.13 -34.44 -0.31 -15.10 16 21 H 0.07 2.04 7.71 -52.49 -0.40 1.63 16 22 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 23 N -0.88 -24.75 13.29 55.43 0.74 -24.02 16 24 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.07 0.44 6.02 -51.93 -0.31 0.13 16 31 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 32 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.12 0.83 7.97 -52.48 -0.42 0.42 16 35 H 0.08 0.46 8.05 -51.92 -0.42 0.05 16 36 H 0.09 0.56 6.16 -51.93 -0.32 0.24 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.40 3.36 8.32 -40.82 -0.34 3.02 16 41 H 0.15 1.82 8.14 -51.92 -0.42 1.39 16 42 H 0.15 1.76 8.14 -51.92 -0.42 1.34 16 43 H 0.09 1.93 8.14 -51.92 -0.42 1.51 16 44 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 391.17 15.07 5.89 5.89 Total: -1.00 -38.18 391.17 -10.31 -48.49 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.80 Total: 3.51 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: -2.35 Total: -33.77 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.49 Total: -32.55 kcal Atomic # 8 Polarization: -58.34 SS G_CDS: -2.10 Total: -60.44 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 53.12 SS G_CDS: -0.42 Total: 52.71 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.18 -10.31 -48.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.049 kcal (2) G-P(sol) polarization free energy of solvation -38.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds