Wall clock time and date at job start Sat Apr 11 2020 05:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99407 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00052 * 359.96186 * 5 4 3 7 7 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 8 8 C 1.50695 * 119.99818 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47313 * 84.99738 * 8 7 2 10 10 H 1.08995 * 109.47165 * 304.99824 * 9 8 7 11 11 C 1.53003 * 109.46857 * 184.99476 * 9 8 7 12 12 N 1.46503 * 109.46734 * 65.00164 * 9 8 7 13 13 C 1.34781 * 119.99288 * 204.99976 * 12 9 8 14 14 O 1.21272 * 120.00379 * 359.97438 * 13 12 9 15 15 C 1.50701 * 119.99819 * 179.97438 * 13 12 9 16 16 S 1.81394 * 109.47344 * 179.97438 * 15 13 12 17 17 O 1.42094 * 108.58082 * 294.48960 * 16 15 13 18 18 O 1.42106 * 108.57835 * 65.51301 * 16 15 13 19 19 C 1.81401 * 101.92122 * 180.02562 * 16 15 13 20 20 C 1.50704 * 109.46922 * 180.02562 * 19 16 15 21 21 H 1.08000 * 120.00137 * 359.97438 * 20 19 16 22 22 C 1.37875 * 119.99783 * 180.02562 * 20 19 16 23 23 N 1.31512 * 120.00118 * 359.97438 * 22 20 19 24 24 Si 1.86810 * 119.99869 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47027 * 59.99453 * 24 22 20 26 26 H 1.48496 * 109.47132 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46818 * 299.99459 * 24 22 20 28 28 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 31 31 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 32 32 H 1.07996 * 120.00197 * 179.97438 * 4 3 2 33 33 H 1.07999 * 119.99661 * 179.97438 * 5 4 3 34 34 H 1.08005 * 119.99954 * 180.02562 * 6 5 4 35 35 H 1.09007 * 109.46764 * 204.99790 * 8 7 2 36 36 H 1.09000 * 109.47236 * 324.99456 * 8 7 2 37 37 H 1.09003 * 109.46959 * 180.02562 * 11 9 8 38 38 H 1.08995 * 109.47517 * 300.00132 * 11 9 8 39 39 H 1.09000 * 109.47123 * 60.00354 * 11 9 8 40 40 H 0.96999 * 120.00432 * 24.99895 * 12 9 8 41 41 H 1.09003 * 109.47028 * 300.00390 * 15 13 12 42 42 H 1.09002 * 109.47328 * 59.99813 * 15 13 12 43 43 H 1.09003 * 109.46930 * 299.99767 * 19 16 15 44 44 H 1.08993 * 109.46970 * 60.00444 * 19 16 15 45 45 H 0.97006 * 119.99517 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0008 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0116 9 6 1.0812 -2.8875 -1.4238 10 1 0.5317 -2.0705 -1.8913 11 6 0.2102 -4.1453 -1.4090 12 7 2.3058 -3.1504 -2.1837 13 6 2.3096 -3.0121 -3.5244 14 8 1.2993 -2.6705 -4.1016 15 6 3.5694 -3.2820 -4.3061 16 16 3.2550 -3.0116 -6.0720 17 8 2.3200 -3.9836 -6.5194 18 8 2.9744 -1.6336 -6.2761 19 6 4.8724 -3.3872 -6.8024 20 6 4.8012 -3.2120 -8.2976 21 1 3.8754 -2.9058 -8.7619 22 6 5.9176 -3.4437 -9.0727 23 7 7.0448 -3.8171 -8.5073 24 14 5.8292 -3.2273 -10.9261 25 1 5.4566 -1.8252 -11.2435 26 1 7.1533 -3.5346 -11.5241 27 1 4.8076 -4.1494 -11.4839 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.6583 2.1327 -0.0004 32 1 4.1204 2.1327 0.0001 33 1 5.3517 0.0000 0.0005 34 1 4.1206 -2.1323 0.0012 35 1 2.0694 -3.2804 0.4497 36 1 0.5337 -2.3930 0.6002 37 1 -0.0483 -4.4202 -2.4316 38 1 0.7597 -4.9623 -0.9414 39 1 -0.7009 -3.9498 -0.8436 40 1 3.1138 -3.4240 -1.7220 41 1 4.3573 -2.6080 -3.9695 42 1 3.8818 -4.3141 -4.1469 43 1 5.6220 -2.7101 -6.3929 44 1 5.1461 -4.4162 -6.5695 45 1 7.8303 -3.9797 -9.0527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905266424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:34 Heat of formation + Delta-G solvation = -128.111121 kcal Electronic energy + Delta-G solvation = -27304.698509 eV Core-core repulsion = 23412.693528 eV Total energy + Delta-G solvation = -3892.004981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.28228 -40.28064 -37.78022 -37.26587 -36.76934 -35.38888 -34.17448 -33.16683 -32.11738 -31.06984 -30.38137 -28.21717 -27.03094 -25.58713 -23.49823 -22.77972 -21.85362 -21.34715 -19.67795 -19.04654 -18.49859 -17.73586 -17.32060 -17.17569 -17.16937 -16.71004 -16.25100 -16.11807 -16.00072 -15.79317 -15.01617 -14.77428 -14.66943 -14.44393 -14.07392 -14.00677 -13.93541 -13.66261 -13.40582 -13.36218 -13.28624 -13.05005 -12.92666 -12.86118 -12.80738 -12.71172 -12.70011 -12.52170 -12.01660 -11.94574 -11.80635 -11.77270 -11.62435 -11.35140 -10.92200 -10.76024 -10.27157 -9.66914 -9.43742 -8.40893 -6.56199 -0.81913 0.46196 0.51253 1.33836 1.38451 1.41201 1.49472 1.90478 2.19708 2.33366 2.85135 2.93150 3.03689 3.27690 3.54129 3.74568 3.89936 3.97087 4.00703 4.09909 4.16741 4.26070 4.30582 4.38966 4.41526 4.55850 4.71927 4.75526 4.76290 4.78807 4.79853 4.85621 4.93189 4.98504 5.03378 5.21099 5.30832 5.36456 5.37875 5.39908 5.61048 5.65699 5.75295 5.77554 6.17301 6.28874 6.51820 7.01505 7.13870 8.71261 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016540 B = 0.002796 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.467760 B =10013.227539 C =10776.740623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.099 4.099 3 C -0.138 4.138 4 C -0.135 4.135 5 C -0.137 4.137 6 C -0.120 4.120 7 C -0.097 4.097 8 C -0.079 4.079 9 C 0.140 3.860 10 H 0.065 0.935 11 C -0.163 4.163 12 N -0.693 5.693 13 C 0.535 3.465 14 O -0.581 6.581 15 C -0.647 4.647 16 S 2.429 3.571 17 O -0.987 6.987 18 O -0.988 6.988 19 C -0.417 4.417 20 C -0.567 4.567 21 H 0.056 0.944 22 C 0.030 3.970 23 N -0.905 5.905 24 Si 0.957 3.043 25 H -0.267 1.267 26 H -0.265 1.265 27 H -0.266 1.266 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.144 0.856 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.033 0.967 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.420 0.580 41 H 0.196 0.804 42 H 0.201 0.799 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.346 2.145 25.836 26.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.099 4.099 3 C -0.156 4.156 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.138 4.138 7 C -0.097 4.097 8 C -0.117 4.117 9 C 0.036 3.964 10 H 0.083 0.917 11 C -0.221 4.221 12 N -0.346 5.346 13 C 0.321 3.679 14 O -0.461 6.461 15 C -0.777 4.777 16 S 2.616 3.384 17 O -0.984 6.984 18 O -0.986 6.986 19 C -0.550 4.550 20 C -0.606 4.606 21 H 0.074 0.926 22 C -0.174 4.174 23 N -0.541 5.541 24 Si 0.780 3.220 25 H -0.191 1.191 26 H -0.189 1.189 27 H -0.191 1.191 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.162 0.838 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.052 0.948 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.258 0.742 41 H 0.213 0.787 42 H 0.218 0.782 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.705 2.602 25.068 26.079 hybrid contribution 1.212 0.057 -0.654 1.378 sum -5.493 2.660 24.414 25.165 Atomic orbital electron populations 1.20919 0.90408 1.04054 1.02210 1.20099 0.97035 0.93094 0.99687 1.21294 0.94836 0.98139 1.01319 1.21424 0.94551 0.99106 1.00193 1.21443 1.00932 0.92714 1.00443 1.21347 0.93567 0.99042 0.99827 1.19912 0.94155 0.94846 1.00748 1.20963 1.02311 0.94182 0.94204 1.21119 0.85234 0.98279 0.91779 0.91677 1.22193 1.00695 0.97397 1.01825 1.45779 1.15586 1.68420 1.04773 1.19580 0.87623 0.76476 0.84264 1.90835 1.36009 1.48915 1.70358 1.30722 1.06523 1.17031 1.23394 1.07599 0.79097 0.74068 0.77635 1.93406 1.61815 1.63216 1.79958 1.93410 1.85112 1.35141 1.84890 1.27611 1.14206 1.07663 1.05540 1.20715 0.98496 1.50820 0.90540 0.92596 1.25709 0.94393 0.93186 1.04075 1.69974 1.01556 1.44551 1.38069 0.85610 0.78455 0.79525 0.78413 1.19138 1.18887 1.19061 0.92176 0.90700 0.89531 0.85438 0.85085 0.84579 0.83783 0.87658 0.87133 0.94759 0.90103 0.89326 0.74190 0.78681 0.78152 0.88819 0.88662 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 9.41 71.24 0.67 -1.09 16 2 C -0.10 -1.83 5.88 -19.87 -0.12 -1.95 16 3 C -0.14 -2.64 9.70 22.27 0.22 -2.43 16 4 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 5 C -0.14 -2.33 10.05 22.27 0.22 -2.10 16 6 C -0.12 -1.84 9.33 22.27 0.21 -1.63 16 7 C -0.10 -1.57 4.89 -19.87 -0.10 -1.67 16 8 C -0.08 -0.90 4.39 29.85 0.13 -0.77 16 9 C 0.14 2.55 2.56 44.99 0.12 2.66 16 10 H 0.06 1.61 7.37 -2.39 -0.02 1.59 16 11 C -0.16 -2.65 9.48 71.98 0.68 -1.97 16 12 N -0.69 -13.87 4.66 -442.53 -2.06 -15.93 16 13 C 0.54 16.59 7.81 87.66 0.68 17.27 16 14 O -0.58 -24.48 15.29 -0.13 0.00 -24.48 16 15 C -0.65 -17.68 6.29 71.24 0.45 -17.23 16 16 S 2.43 107.43 3.88 -56.49 -0.22 107.21 16 17 O -0.99 -50.89 17.95 -125.75 -2.26 -53.14 16 18 O -0.99 -51.49 17.95 -125.74 -2.26 -53.75 16 19 C -0.42 -19.78 5.56 71.24 0.40 -19.39 16 20 C -0.57 -32.39 9.13 25.60 0.23 -32.16 16 21 H 0.06 3.27 7.71 -2.91 -0.02 3.25 16 22 C 0.03 1.65 5.46 84.65 0.46 2.11 16 23 N -0.90 -50.36 13.29 21.45 0.28 -50.07 16 24 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 26 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 30 H 0.09 0.93 6.02 -2.38 -0.01 0.91 16 31 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.14 1.36 7.97 -2.91 -0.02 1.33 16 35 H 0.11 0.68 8.05 -2.38 -0.02 0.66 16 36 H 0.11 0.90 6.16 -2.39 -0.01 0.89 16 37 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.42 5.01 8.32 -92.71 -0.77 4.24 16 41 H 0.20 3.76 8.14 -2.39 -0.02 3.74 16 42 H 0.20 3.64 8.14 -2.39 -0.02 3.62 16 43 H 0.09 4.21 8.14 -2.39 -0.02 4.19 16 44 H 0.10 4.25 8.14 -2.39 -0.02 4.23 16 45 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 Total: -1.00 -87.77 391.17 0.22 -87.55 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.22 Total: 19.80 kcal Atomic # 6 Polarization: -67.08 SS G_CDS: 4.48 Total: -62.60 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -1.78 Total: -66.01 kcal Atomic # 8 Polarization: -126.86 SS G_CDS: -4.52 Total: -131.37 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 107.43 SS G_CDS: -0.22 Total: 107.21 kcal Total: -87.77 0.22 -87.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.557 kcal (2) G-P(sol) polarization free energy of solvation -87.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds