Wall clock time and date at job start Sat Apr 11 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38253 * 119.99965 * 2 1 4 4 C 1.38215 * 119.99804 * 180.23551 * 3 2 1 5 5 C 1.38262 * 120.00093 * 359.80855 * 4 3 2 6 6 C 1.38212 * 119.99903 * 359.97438 * 5 4 3 7 7 C 1.38214 * 120.00060 * 179.79247 * 2 1 3 8 8 C 1.50703 * 119.99790 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.47113 * 324.72651 * 8 7 2 10 10 C 1.53002 * 109.47292 * 84.72514 * 8 7 2 11 11 N 1.46506 * 109.47289 * 204.72614 * 8 7 2 12 12 C 1.34767 * 120.00003 * 154.99668 * 11 8 7 13 13 O 1.21281 * 120.00199 * 0.02562 * 12 11 8 14 14 C 1.50706 * 119.99889 * 179.97438 * 12 11 8 15 15 H 1.08992 * 109.47472 * 325.00672 * 14 12 11 16 16 C 1.53002 * 109.46928 * 85.00586 * 14 12 11 17 17 S 1.81400 * 109.47256 * 205.00030 * 14 12 11 18 18 O 1.42093 * 108.58039 * 299.49261 * 17 14 12 19 19 O 1.42102 * 108.57458 * 70.51532 * 17 14 12 20 20 C 1.81396 * 101.92326 * 185.00132 * 17 14 12 21 21 C 1.50694 * 109.47643 * 180.02562 * 20 17 14 22 22 H 1.07999 * 119.99601 * 359.97438 * 21 20 17 23 23 C 1.37871 * 120.00414 * 180.02562 * 21 20 17 24 24 N 1.31518 * 119.99872 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 120.00050 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47164 * 90.00332 * 25 23 21 27 27 H 1.48503 * 109.47691 * 210.00357 * 25 23 21 28 28 H 1.48499 * 109.47264 * 330.00655 * 25 23 21 29 29 H 1.09007 * 109.46571 * 270.20769 * 1 2 3 30 30 H 1.08994 * 109.46937 * 30.20770 * 1 2 3 31 31 H 1.08999 * 109.47558 * 150.21038 * 1 2 3 32 32 H 1.07990 * 120.00418 * 0.06609 * 3 2 1 33 33 H 1.07998 * 120.00336 * 179.83941 * 4 3 2 34 34 H 1.08003 * 120.00049 * 180.02562 * 5 4 3 35 35 H 1.07995 * 120.00121 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.47059 * 179.97438 * 10 8 7 37 37 H 1.08992 * 109.47060 * 300.00111 * 10 8 7 38 38 H 1.09004 * 109.46930 * 60.00025 * 10 8 7 39 39 H 0.96996 * 119.99678 * 335.00455 * 11 8 7 40 40 H 1.09002 * 109.47070 * 180.02562 * 16 14 12 41 41 H 1.09004 * 109.46733 * 300.00300 * 16 14 12 42 42 H 1.08996 * 109.47407 * 59.99617 * 16 14 12 43 43 H 1.09001 * 109.47245 * 300.00390 * 20 17 14 44 44 H 1.09007 * 109.46976 * 60.00136 * 20 17 14 45 45 H 0.97001 * 119.99687 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0049 5 6 4.2717 -0.0001 -0.0058 6 6 3.5806 -1.1970 -0.0013 7 6 2.1981 -1.1970 0.0043 8 6 1.4445 -2.5020 0.0096 9 1 0.5365 -2.3949 0.6031 10 6 1.0741 -2.8830 -1.4252 11 7 2.2871 -3.5501 0.5911 12 6 1.7200 -4.6313 1.1618 13 8 0.5122 -4.7369 1.1937 14 6 2.5867 -5.7097 1.7594 15 1 3.4945 -5.8169 1.1658 16 6 2.9576 -5.3291 3.1942 17 16 1.6794 -7.2804 1.7659 18 8 0.5074 -7.1230 2.5538 19 8 1.5584 -7.7389 0.4263 20 6 2.8272 -8.3726 2.6491 21 6 2.2293 -9.7520 2.7524 22 1 1.2558 -9.9515 2.3293 23 6 2.9244 -10.7589 3.3878 24 7 2.4027 -11.9629 3.4774 25 14 4.6077 -10.4136 4.1201 26 1 4.4532 -9.9703 5.5289 27 1 5.4293 -11.6500 4.0775 28 1 5.2791 -9.3460 3.3361 29 1 -0.3633 0.0037 1.0278 30 1 -0.3633 0.8881 -0.5170 31 1 -0.3634 -0.8918 -0.5105 32 1 1.6584 2.1326 0.0011 33 1 4.1205 2.1325 -0.0075 34 1 5.3517 -0.0001 -0.0093 35 1 4.1206 -2.1323 -0.0016 36 1 0.5295 -3.8272 -1.4213 37 1 0.4473 -2.1033 -1.8577 38 1 1.9822 -2.9901 -2.0186 39 1 3.2530 -3.4657 0.5654 40 1 3.5849 -6.1088 3.6263 41 1 3.5028 -4.3852 3.1903 42 1 2.0499 -5.2219 3.7879 43 1 3.7700 -8.4255 2.1047 44 1 3.0069 -7.9783 3.6494 45 1 2.8919 -12.6714 3.9241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905267125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:37 Heat of formation + Delta-G solvation = -86.388025 kcal Electronic energy + Delta-G solvation = -27472.095916 eV Core-core repulsion = 23581.900184 eV Total energy + Delta-G solvation = -3890.195732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.65786 -39.41739 -36.14289 -35.85071 -35.08565 -33.82423 -33.31943 -33.08585 -31.35004 -29.83626 -29.52424 -27.32033 -25.20366 -23.96969 -23.14687 -22.42263 -20.98154 -20.42779 -18.23029 -17.81339 -17.35803 -16.95649 -16.26207 -15.86675 -15.60494 -15.37467 -15.20833 -14.88153 -14.66101 -14.35003 -14.20515 -14.10093 -13.74097 -13.46674 -13.18065 -12.89615 -12.81198 -12.71355 -12.59732 -12.45095 -12.26678 -12.17995 -11.96135 -11.84218 -11.58297 -11.38214 -11.17031 -11.12061 -10.99750 -10.86785 -10.39857 -10.25536 -10.02853 -9.81698 -9.46121 -9.30943 -9.18938 -8.91675 -8.83037 -6.30084 -4.38555 0.68196 0.93814 0.99167 2.44709 2.84242 3.12862 3.17535 3.21845 3.36086 3.63834 4.18735 4.20615 4.26809 4.41492 4.43118 4.52165 4.64756 4.73699 4.90626 4.91439 4.95373 4.98311 5.03150 5.16391 5.24124 5.26311 5.29617 5.36024 5.44405 5.50821 5.57005 5.61764 5.68762 5.77634 5.92698 6.01197 6.01360 6.12559 6.14829 6.15971 6.28236 6.34747 6.60144 7.17278 7.18959 7.96804 8.03926 8.64774 9.23575 10.81151 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022761 B = 0.002707 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.855883 B =10341.413928 C =11039.263137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.116 4.116 4 C -0.118 4.118 5 C -0.120 4.120 6 C -0.114 4.114 7 C -0.089 4.089 8 C 0.179 3.821 9 H 0.104 0.896 10 C -0.163 4.163 11 N -0.720 5.720 12 C 0.547 3.453 13 O -0.516 6.516 14 C -0.636 4.636 15 H 0.148 0.852 16 C -0.134 4.134 17 S 2.439 3.561 18 O -0.919 6.919 19 O -0.942 6.942 20 C -0.458 4.458 21 C -0.529 4.529 22 H 0.089 0.911 23 C 0.088 3.912 24 N -0.879 5.879 25 Si 0.881 3.119 26 H -0.270 1.270 27 H -0.281 1.281 28 H -0.263 1.263 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.401 0.599 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.101 27.225 -6.253 28.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.134 4.134 4 C -0.136 4.136 5 C -0.138 4.138 6 C -0.132 4.132 7 C -0.089 4.089 8 C 0.075 3.925 9 H 0.121 0.879 10 C -0.222 4.222 11 N -0.375 5.375 12 C 0.331 3.669 13 O -0.391 6.391 14 C -0.740 4.740 15 H 0.166 0.834 16 C -0.192 4.192 17 S 2.617 3.383 18 O -0.916 6.916 19 O -0.939 6.939 20 C -0.591 4.591 21 C -0.567 4.567 22 H 0.107 0.893 23 C -0.119 4.119 24 N -0.515 5.515 25 Si 0.707 3.293 26 H -0.195 1.195 27 H -0.206 1.206 28 H -0.187 1.187 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.238 0.762 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.409 26.863 -6.551 27.999 hybrid contribution 2.471 0.414 0.624 2.583 sum 6.880 27.277 -5.926 28.749 Atomic orbital electron populations 1.20960 0.90931 1.03380 1.02989 1.19705 0.96244 0.92204 0.99174 1.21037 0.94291 0.97376 1.00727 1.21161 0.94322 0.98114 1.00028 1.21106 0.99960 0.92327 1.00427 1.20872 0.93451 0.98215 1.00688 1.19785 0.93852 0.94024 1.01274 1.19863 0.93825 0.83234 0.95621 0.87854 1.22223 1.02325 1.02917 0.94686 1.46089 1.10405 1.21056 1.59923 1.19404 0.88040 0.82267 0.77174 1.90873 1.13652 1.77669 1.56868 1.31010 1.14997 1.21918 1.06074 0.83385 1.21584 1.03928 1.03827 0.89869 1.08090 0.78091 0.75403 0.76687 1.93502 1.42820 1.84252 1.71042 1.93490 1.86020 1.77972 1.36389 1.28106 1.11251 1.11187 1.08588 1.20091 1.06360 0.89598 1.40657 0.89321 1.24887 0.98000 0.94442 0.94552 1.69867 1.38452 1.01689 1.41505 0.86756 0.83829 0.78559 0.80163 1.19515 1.20599 1.18744 0.90664 0.91201 0.90740 0.85847 0.85994 0.85889 0.86195 0.90915 0.91121 0.91999 0.76248 0.89423 0.90829 0.89841 0.89735 0.89858 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 9.22 36.01 0.33 -0.57 16 2 C -0.07 -0.62 5.88 -104.62 -0.62 -1.23 16 3 C -0.12 -0.87 9.70 -39.58 -0.38 -1.25 16 4 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 5 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 6 C -0.11 -0.93 9.24 -39.58 -0.37 -1.29 16 7 C -0.09 -0.82 5.06 -104.62 -0.53 -1.35 16 8 C 0.18 1.93 2.09 -69.08 -0.14 1.79 16 9 H 0.10 1.25 6.44 -51.93 -0.33 0.91 16 10 C -0.16 -1.69 9.27 37.16 0.34 -1.35 16 11 N -0.72 -8.30 5.00 -54.92 -0.27 -8.57 16 12 C 0.55 8.55 6.92 -10.99 -0.08 8.48 16 13 O -0.52 -10.20 15.14 -9.37 -0.14 -10.34 16 14 C -0.64 -9.28 3.15 -27.88 -0.09 -9.37 16 15 H 0.15 1.55 8.14 -51.93 -0.42 1.13 16 16 C -0.13 -1.63 8.88 37.16 0.33 -1.30 16 17 S 2.44 51.62 3.80 -107.50 -0.41 51.21 16 18 O -0.92 -22.60 17.21 -64.29 -1.11 -23.71 16 19 O -0.94 -22.72 18.10 -57.83 -1.05 -23.77 16 20 C -0.46 -9.97 4.02 36.00 0.14 -9.82 16 21 C -0.53 -14.80 9.68 -34.45 -0.33 -15.13 16 22 H 0.09 2.74 7.96 -52.49 -0.42 2.32 16 23 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 24 N -0.88 -26.12 13.96 55.43 0.77 -25.35 16 25 Si 0.88 19.85 27.47 -169.99 -4.67 15.18 16 26 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.26 -5.35 6.54 56.52 0.37 -4.99 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 31 H 0.07 0.55 5.40 -51.93 -0.28 0.27 16 32 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 35 H 0.12 0.79 6.07 -52.49 -0.32 0.47 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.60 6.88 -51.93 -0.36 0.25 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.40 3.41 6.21 -40.82 -0.25 3.15 16 40 H 0.09 0.95 6.39 -51.93 -0.33 0.62 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.08 1.63 7.20 -51.92 -0.37 1.26 16 44 H 0.08 1.59 6.20 -51.92 -0.32 1.27 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 378.26 15.07 5.70 5.70 Total: -1.00 -37.69 378.26 -9.83 -47.52 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.38 Total: 4.69 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: -2.28 Total: -32.55 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.50 Total: -33.92 kcal Atomic # 8 Polarization: -55.52 SS G_CDS: -2.29 Total: -57.82 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.67 Total: 15.18 kcal Atomic # 16 Polarization: 51.62 SS G_CDS: -0.41 Total: 51.21 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.69 -9.83 -47.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905267125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.871 kcal (2) G-P(sol) polarization free energy of solvation -37.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds