Wall clock time and date at job start Sat Apr 11 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38253 * 119.99965 * 2 1 4 4 C 1.38215 * 119.99804 * 180.23551 * 3 2 1 5 5 C 1.38262 * 120.00093 * 359.80855 * 4 3 2 6 6 C 1.38212 * 119.99903 * 359.97438 * 5 4 3 7 7 C 1.38214 * 120.00060 * 179.79247 * 2 1 3 8 8 C 1.50703 * 119.99790 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.47113 * 324.72651 * 8 7 2 10 10 C 1.53002 * 109.47292 * 84.72514 * 8 7 2 11 11 N 1.46506 * 109.47289 * 204.72614 * 8 7 2 12 12 C 1.34767 * 120.00003 * 154.99668 * 11 8 7 13 13 O 1.21281 * 120.00199 * 0.02562 * 12 11 8 14 14 C 1.50706 * 119.99889 * 179.97438 * 12 11 8 15 15 H 1.08992 * 109.47472 * 325.00672 * 14 12 11 16 16 C 1.53002 * 109.46928 * 85.00586 * 14 12 11 17 17 S 1.81400 * 109.47256 * 205.00030 * 14 12 11 18 18 O 1.42093 * 108.58039 * 299.49261 * 17 14 12 19 19 O 1.42102 * 108.57458 * 70.51532 * 17 14 12 20 20 C 1.81396 * 101.92326 * 185.00132 * 17 14 12 21 21 C 1.50694 * 109.47643 * 180.02562 * 20 17 14 22 22 H 1.07999 * 119.99601 * 359.97438 * 21 20 17 23 23 C 1.37871 * 120.00414 * 180.02562 * 21 20 17 24 24 N 1.31518 * 119.99872 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 120.00050 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47164 * 90.00332 * 25 23 21 27 27 H 1.48503 * 109.47691 * 210.00357 * 25 23 21 28 28 H 1.48499 * 109.47264 * 330.00655 * 25 23 21 29 29 H 1.09007 * 109.46571 * 270.20769 * 1 2 3 30 30 H 1.08994 * 109.46937 * 30.20770 * 1 2 3 31 31 H 1.08999 * 109.47558 * 150.21038 * 1 2 3 32 32 H 1.07990 * 120.00418 * 0.06609 * 3 2 1 33 33 H 1.07998 * 120.00336 * 179.83941 * 4 3 2 34 34 H 1.08003 * 120.00049 * 180.02562 * 5 4 3 35 35 H 1.07995 * 120.00121 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.47059 * 179.97438 * 10 8 7 37 37 H 1.08992 * 109.47060 * 300.00111 * 10 8 7 38 38 H 1.09004 * 109.46930 * 60.00025 * 10 8 7 39 39 H 0.96996 * 119.99678 * 335.00455 * 11 8 7 40 40 H 1.09002 * 109.47070 * 180.02562 * 16 14 12 41 41 H 1.09004 * 109.46733 * 300.00300 * 16 14 12 42 42 H 1.08996 * 109.47407 * 59.99617 * 16 14 12 43 43 H 1.09001 * 109.47245 * 300.00390 * 20 17 14 44 44 H 1.09007 * 109.46976 * 60.00136 * 20 17 14 45 45 H 0.97001 * 119.99687 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0049 5 6 4.2717 -0.0001 -0.0058 6 6 3.5806 -1.1970 -0.0013 7 6 2.1981 -1.1970 0.0043 8 6 1.4445 -2.5020 0.0096 9 1 0.5365 -2.3949 0.6031 10 6 1.0741 -2.8830 -1.4252 11 7 2.2871 -3.5501 0.5911 12 6 1.7200 -4.6313 1.1618 13 8 0.5122 -4.7369 1.1937 14 6 2.5867 -5.7097 1.7594 15 1 3.4945 -5.8169 1.1658 16 6 2.9576 -5.3291 3.1942 17 16 1.6794 -7.2804 1.7659 18 8 0.5074 -7.1230 2.5538 19 8 1.5584 -7.7389 0.4263 20 6 2.8272 -8.3726 2.6491 21 6 2.2293 -9.7520 2.7524 22 1 1.2558 -9.9515 2.3293 23 6 2.9244 -10.7589 3.3878 24 7 2.4027 -11.9629 3.4774 25 14 4.6077 -10.4136 4.1201 26 1 4.4532 -9.9703 5.5289 27 1 5.4293 -11.6500 4.0775 28 1 5.2791 -9.3460 3.3361 29 1 -0.3633 0.0037 1.0278 30 1 -0.3633 0.8881 -0.5170 31 1 -0.3634 -0.8918 -0.5105 32 1 1.6584 2.1326 0.0011 33 1 4.1205 2.1325 -0.0075 34 1 5.3517 -0.0001 -0.0093 35 1 4.1206 -2.1323 -0.0016 36 1 0.5295 -3.8272 -1.4213 37 1 0.4473 -2.1033 -1.8577 38 1 1.9822 -2.9901 -2.0186 39 1 3.2530 -3.4657 0.5654 40 1 3.5849 -6.1088 3.6263 41 1 3.5028 -4.3852 3.1903 42 1 2.0499 -5.2219 3.7879 43 1 3.7700 -8.4255 2.1047 44 1 3.0069 -7.9783 3.6494 45 1 2.8919 -12.6714 3.9241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905267125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:37 Heat of formation + Delta-G solvation = -114.991972 kcal Electronic energy + Delta-G solvation = -27473.336276 eV Core-core repulsion = 23581.900184 eV Total energy + Delta-G solvation = -3891.436092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.58412 -40.28720 -37.89471 -36.93103 -36.71876 -35.36242 -34.81622 -33.87031 -32.18946 -31.65579 -30.31685 -27.87721 -26.24254 -25.13218 -24.70998 -23.22383 -21.70160 -21.44624 -19.69946 -19.49558 -18.76376 -18.11773 -17.30175 -17.11321 -17.03947 -16.55447 -16.28318 -16.07175 -15.94618 -15.51254 -15.19173 -15.05349 -14.65647 -14.44649 -14.32143 -14.11623 -13.97292 -13.91493 -13.56839 -13.34676 -13.27565 -13.07783 -13.05614 -12.96776 -12.89206 -12.81835 -12.62364 -12.53083 -12.20416 -11.92466 -11.78950 -11.68678 -11.61859 -11.35015 -10.99223 -10.86718 -10.46421 -9.75302 -9.51020 -8.39400 -6.57260 -0.94823 0.36262 0.45619 1.25080 1.38496 1.44207 1.54807 1.74622 2.10252 2.33915 2.80300 2.90280 2.93595 3.16345 3.36535 3.50388 3.72778 3.87884 3.93018 3.98317 4.12675 4.19420 4.23828 4.38298 4.42106 4.55736 4.56659 4.60656 4.64601 4.66074 4.73576 4.75248 4.84950 4.92649 5.05605 5.07967 5.10341 5.20319 5.28829 5.32960 5.55292 5.60942 5.67834 5.87122 6.07139 6.19774 6.48150 6.89768 7.09719 8.76796 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022761 B = 0.002707 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.855883 B =10341.413928 C =11039.263137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.086 4.086 3 C -0.124 4.124 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.121 4.121 7 C -0.103 4.103 8 C 0.179 3.821 9 H 0.084 0.916 10 C -0.161 4.161 11 N -0.697 5.697 12 C 0.537 3.463 13 O -0.568 6.568 14 C -0.599 4.599 15 H 0.204 0.796 16 C -0.144 4.144 17 S 2.423 3.577 18 O -0.975 6.975 19 O -0.991 6.991 20 C -0.462 4.462 21 C -0.557 4.557 22 H 0.027 0.973 23 C 0.016 3.984 24 N -0.940 5.940 25 Si 0.957 3.043 26 H -0.254 1.254 27 H -0.282 1.282 28 H -0.212 1.212 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.137 0.863 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.419 0.581 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.064 0.936 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.131 31.099 -5.778 33.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.086 4.086 3 C -0.141 4.141 4 C -0.138 4.138 5 C -0.142 4.142 6 C -0.139 4.139 7 C -0.104 4.104 8 C 0.075 3.925 9 H 0.102 0.898 10 C -0.219 4.219 11 N -0.351 5.351 12 C 0.322 3.678 13 O -0.447 6.447 14 C -0.711 4.711 15 H 0.222 0.778 16 C -0.202 4.202 17 S 2.609 3.391 18 O -0.972 6.972 19 O -0.988 6.988 20 C -0.595 4.595 21 C -0.595 4.595 22 H 0.045 0.955 23 C -0.184 4.184 24 N -0.578 5.578 25 Si 0.775 3.225 26 H -0.178 1.178 27 H -0.208 1.208 28 H -0.134 1.134 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.260 0.740 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.083 0.917 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.422 30.712 -6.104 32.700 hybrid contribution 0.847 -0.647 0.407 1.141 sum 10.269 30.065 -5.697 32.277 Atomic orbital electron populations 1.20972 0.90770 1.03714 1.02882 1.19881 0.96658 0.92573 0.99515 1.21295 0.94873 0.97597 1.00380 1.21515 0.94282 0.99188 0.98837 1.21417 1.01176 0.91963 0.99640 1.21096 0.92900 0.99477 1.00468 1.19660 0.94460 0.92997 1.03244 1.19844 0.93491 0.84014 0.95170 0.89825 1.22196 1.02796 1.01901 0.95002 1.45926 1.11505 1.19717 1.57963 1.19645 0.87490 0.83331 0.77328 1.90874 1.16007 1.78804 1.59065 1.30544 1.15150 1.15892 1.09503 0.77850 1.21857 1.04143 1.06999 0.87178 1.07867 0.78319 0.77588 0.75288 1.93435 1.46239 1.85875 1.71640 1.93424 1.87010 1.80418 1.37961 1.28061 1.12275 1.07772 1.11403 1.20354 1.04765 0.93565 1.40791 0.95516 1.26214 1.03830 0.93643 0.94715 1.70057 1.41168 1.03404 1.43125 0.85591 0.76714 0.79927 0.80242 1.17836 1.20787 1.13398 0.91030 0.89646 0.91635 0.84233 0.83842 0.83689 0.84580 0.93871 0.89639 0.90755 0.74035 0.87028 0.86359 0.91684 0.85724 0.86061 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.22 71.24 0.66 -1.09 16 2 C -0.09 -1.31 5.88 -19.87 -0.12 -1.42 16 3 C -0.12 -1.51 9.70 22.27 0.22 -1.29 16 4 C -0.12 -1.26 10.05 22.27 0.22 -1.04 16 5 C -0.12 -1.31 10.05 22.27 0.22 -1.09 16 6 C -0.12 -1.54 9.24 22.27 0.21 -1.33 16 7 C -0.10 -1.68 5.06 -19.87 -0.10 -1.78 16 8 C 0.18 3.70 2.09 44.25 0.09 3.79 16 9 H 0.08 2.08 6.44 -2.38 -0.02 2.06 16 10 C -0.16 -3.28 9.27 71.98 0.67 -2.62 16 11 N -0.70 -14.32 5.00 -446.08 -2.23 -16.55 16 12 C 0.54 16.10 6.92 87.66 0.61 16.71 16 13 O -0.57 -23.28 15.14 11.24 0.17 -23.11 16 14 C -0.60 -15.55 3.15 29.85 0.09 -15.46 16 15 H 0.20 3.01 8.14 -2.39 -0.02 2.99 16 16 C -0.14 -2.80 8.88 71.98 0.64 -2.16 16 17 S 2.42 104.00 3.80 -56.49 -0.21 103.79 16 18 O -0.97 -50.86 17.21 -121.20 -2.09 -52.94 16 19 O -0.99 -49.98 18.10 -127.37 -2.30 -52.29 16 20 C -0.46 -19.30 4.02 71.23 0.29 -19.01 16 21 C -0.56 -32.29 9.68 25.60 0.25 -32.04 16 22 H 0.03 1.80 7.96 -2.91 -0.02 1.78 16 23 C 0.02 0.92 5.47 84.65 0.46 1.39 16 24 N -0.94 -58.39 13.96 21.45 0.30 -58.10 16 25 Si 0.96 38.78 27.47 68.60 1.88 40.66 16 26 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 27 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 28 H -0.21 -6.86 6.54 99.48 0.65 -6.21 16 29 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 31 H 0.06 0.99 5.40 -2.39 -0.01 0.98 16 32 H 0.14 1.15 8.06 -2.92 -0.02 1.13 16 33 H 0.14 0.83 8.06 -2.91 -0.02 0.81 16 34 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 35 H 0.14 1.15 6.07 -2.91 -0.02 1.13 16 36 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.45 6.88 -2.39 -0.02 1.43 16 38 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.42 5.25 6.21 -92.71 -0.58 4.68 16 40 H 0.11 1.69 6.39 -2.39 -0.02 1.68 16 41 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.12 4.22 7.20 -2.39 -0.02 4.21 16 44 H 0.12 4.16 6.20 -2.39 -0.01 4.14 16 45 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -93.41 378.26 0.31 -93.10 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.38 Total: 23.88 kcal Atomic # 6 Polarization: -62.85 SS G_CDS: 4.41 Total: -58.45 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -1.93 Total: -74.64 kcal Atomic # 8 Polarization: -124.12 SS G_CDS: -4.22 Total: -128.34 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 1.88 Total: 40.66 kcal Atomic # 16 Polarization: 104.00 SS G_CDS: -0.21 Total: 103.79 kcal Total: -93.41 0.31 -93.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905267125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.889 kcal (2) G-P(sol) polarization free energy of solvation -93.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds