Wall clock time and date at job start Sat Apr 11 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38471 * 119.91026 * 2 1 4 4 C 1.38427 * 120.34776 * 179.97438 * 3 2 1 5 5 C 1.37864 * 120.17732 * 359.72470 * 4 3 2 6 6 C 1.39895 * 119.81957 * 0.54754 * 5 4 3 7 7 C 1.47403 * 120.16981 * 179.71876 * 6 5 4 8 8 O 1.21356 * 119.99680 * 173.59109 * 7 6 5 9 9 C 1.49289 * 120.00371 * 353.59844 * 7 6 5 10 10 O 1.21366 * 119.99769 * 5.17509 * 9 7 6 11 11 N 1.34770 * 120.00171 * 185.17622 * 9 7 6 12 12 C 1.46501 * 120.00062 * 180.02562 * 11 9 7 13 13 C 1.50702 * 109.47310 * 179.97438 * 12 11 9 14 14 C 1.38321 * 119.96773 * 269.97793 * 13 12 11 15 15 C 1.38276 * 120.13963 * 180.02562 * 14 13 12 16 16 C 1.38124 * 120.06743 * 359.67953 * 15 14 13 17 17 C 1.38861 * 119.93178 * 0.59303 * 16 15 14 18 18 O 1.35746 * 120.07031 * 179.69694 * 17 16 15 19 19 C 1.34830 * 116.99971 * 353.99847 * 18 17 16 20 20 H 1.07995 * 120.00116 * 5.04755 * 19 18 17 21 21 C 1.38662 * 119.99974 * 185.04584 * 19 18 17 22 22 N 1.31560 * 119.99872 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99899 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47171 * 59.99949 * 23 21 19 25 25 H 1.48502 * 109.47051 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47268 * 299.99780 * 23 21 19 27 27 C 1.38080 * 119.96266 * 89.99772 * 13 12 11 28 28 C 1.37831 * 119.91114 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47541 * 270.01764 * 1 2 3 30 30 H 1.09006 * 109.47184 * 30.02578 * 1 2 3 31 31 H 1.09005 * 109.46884 * 150.02113 * 1 2 3 32 32 H 1.07996 * 119.82550 * 359.95670 * 3 2 1 33 33 H 1.08006 * 119.91040 * 180.02562 * 4 3 2 34 34 H 1.08003 * 120.09331 * 180.28006 * 5 4 3 35 35 H 0.97003 * 119.99803 * 359.97438 * 11 9 7 36 36 H 1.09005 * 109.47354 * 59.99891 * 12 11 9 37 37 H 1.08999 * 109.47142 * 299.99781 * 12 11 9 38 38 H 1.08003 * 119.92800 * 0.02562 * 14 13 12 39 39 H 1.07997 * 119.96671 * 179.97438 * 15 14 13 40 40 H 1.08005 * 120.03399 * 180.32309 * 16 15 14 41 41 H 0.96995 * 120.00107 * 180.02562 * 22 21 19 42 42 H 1.08005 * 120.03851 * 359.97438 * 27 13 12 43 43 H 1.07994 * 120.09145 * 0.05288 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.2003 0.0000 4 6 3.5817 1.2109 0.0005 5 6 4.2838 0.0244 0.0068 6 6 3.5936 -1.1924 0.0010 7 6 4.3365 -2.4655 0.0014 8 8 3.7397 -3.5162 0.1137 9 6 5.8230 -2.4624 -0.1362 10 8 6.4286 -1.4108 -0.1539 11 7 6.4926 -3.6274 -0.2408 12 6 7.9514 -3.6243 -0.3753 13 6 8.4499 -5.0432 -0.4728 14 6 8.7889 -5.7368 0.6748 15 6 9.2471 -7.0386 0.5895 16 6 9.3615 -7.6526 -0.6425 17 6 9.0273 -6.9571 -1.7970 18 8 9.1445 -7.5557 -3.0097 19 6 9.7073 -8.7807 -3.0358 20 1 9.9665 -9.2757 -2.1116 21 6 9.9534 -9.4049 -4.2493 22 7 9.6371 -8.8021 -5.3751 23 14 10.7338 -11.1016 -4.2855 24 1 9.8654 -12.0615 -3.5578 25 1 10.8892 -11.5450 -5.6942 26 1 12.0668 -11.0473 -3.6333 27 6 8.5681 -5.6492 -1.7079 28 6 2.1943 -1.1947 0.0005 29 1 -0.3634 0.0003 1.0276 30 1 -0.3634 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6532 2.1331 -0.0007 33 1 4.1131 2.1511 0.0009 34 1 5.3638 0.0342 0.0118 35 1 6.0086 -4.4679 -0.2263 36 1 8.3956 -3.1426 0.4958 37 1 8.2321 -3.0776 -1.2755 38 1 8.6954 -5.2606 1.6397 39 1 9.5114 -7.5775 1.4873 40 1 9.7145 -8.6712 -0.7082 41 1 9.8088 -9.2388 -6.2239 42 1 8.3032 -5.1072 -2.6037 43 1 1.6544 -2.1300 0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001126123833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:21 Heat of formation + Delta-G solvation = -41.345124 kcal Electronic energy + Delta-G solvation = -26841.757314 eV Core-core repulsion = 22818.070838 eV Total energy + Delta-G solvation = -4023.686476 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.95426 -39.43741 -39.00209 -38.41022 -36.89498 -34.82219 -33.14650 -32.36347 -31.49014 -30.95493 -29.22610 -27.57808 -26.80554 -25.57201 -24.93199 -22.40876 -22.06779 -21.74487 -20.90079 -20.09885 -18.11694 -17.50823 -17.21833 -16.90283 -16.54047 -15.96527 -15.53144 -15.33926 -15.17011 -14.81113 -14.52343 -14.35902 -14.22653 -14.16412 -13.86878 -13.66573 -13.48009 -13.42267 -12.76268 -12.58196 -12.49225 -12.27154 -12.23108 -11.99949 -11.86130 -11.71195 -11.40591 -11.12620 -10.95396 -10.87898 -10.75726 -10.51616 -9.54989 -9.44758 -9.31301 -9.26137 -9.00216 -8.91113 -8.29759 -7.37002 -6.51255 -4.10930 0.10384 1.08867 1.43325 1.78899 2.22327 2.74489 2.86434 3.09472 3.10523 3.13469 3.53487 3.90768 4.03073 4.40515 4.48862 4.54628 4.55519 4.82047 4.84161 4.93683 5.03176 5.14151 5.18135 5.24664 5.26619 5.45785 5.48039 5.58972 5.64561 5.72977 5.78060 5.81899 5.97116 6.03403 6.08483 6.17276 6.20465 6.32278 6.49870 6.62631 6.70857 6.76753 6.95301 7.11735 7.22442 7.29093 7.32878 7.66346 7.84101 7.92466 8.93759 9.61655 10.66273 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019772 B = 0.001893 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.801648 B =14791.269676 C =15360.929974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.110 4.110 3 C -0.083 4.083 4 C -0.137 4.137 5 C -0.070 4.070 6 C -0.164 4.164 7 C 0.392 3.608 8 O -0.419 6.419 9 C 0.484 3.516 10 O -0.515 6.515 11 N -0.689 5.689 12 C 0.164 3.836 13 C -0.078 4.078 14 C -0.194 4.194 15 C -0.076 4.076 16 C -0.223 4.223 17 C 0.150 3.850 18 O -0.175 6.175 19 C -0.394 4.394 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.269 1.269 27 C -0.169 4.169 28 C -0.056 4.056 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.172 0.828 35 H 0.414 0.586 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.272 0.728 42 H 0.119 0.881 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.784 16.395 11.838 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.110 4.110 3 C -0.101 4.101 4 C -0.155 4.155 5 C -0.087 4.087 6 C -0.166 4.166 7 C 0.265 3.735 8 O -0.291 6.291 9 C 0.267 3.733 10 O -0.393 6.393 11 N -0.341 5.341 12 C 0.042 3.958 13 C -0.078 4.078 14 C -0.213 4.213 15 C -0.094 4.094 16 C -0.243 4.243 17 C 0.096 3.904 18 O -0.078 6.078 19 C -0.470 4.470 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.189 4.189 28 C -0.075 4.075 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.189 0.811 35 H 0.250 0.750 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.146 0.854 41 H 0.081 0.919 42 H 0.137 0.863 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.708 16.569 11.374 23.778 hybrid contribution 0.260 -1.328 -0.006 1.354 sum -12.448 15.241 11.368 22.726 Atomic orbital electron populations 1.20787 0.90619 1.03051 1.02519 1.19856 0.96468 0.92776 1.01888 1.21416 0.94585 0.97607 0.96492 1.21271 0.94021 0.98625 1.01621 1.22668 1.03550 0.90700 0.91825 1.20051 0.93929 0.93560 1.09051 1.22574 0.88958 0.89050 0.72879 1.90595 1.71357 1.33974 1.33215 1.20666 0.89233 0.84669 0.78735 1.90525 1.69248 1.30252 1.49276 1.46175 1.08714 1.08941 1.70287 1.20336 0.78020 0.94538 1.02914 1.19201 1.01368 0.94038 0.93234 1.20477 1.08410 0.95756 0.96701 1.20749 0.97538 0.94485 0.96607 1.21260 1.09151 1.01696 0.92195 1.19315 0.93121 0.91575 0.86404 1.83979 1.68841 1.31355 1.23622 1.21281 1.40310 0.90977 0.94452 0.89053 1.25308 0.97049 1.00001 0.94111 1.70025 1.43806 1.38014 0.97612 0.85769 0.79457 0.80201 0.77946 1.19463 1.20226 1.19448 1.20088 1.08222 0.93630 0.96987 1.21287 0.92609 0.98491 0.95083 0.91060 0.91374 0.91299 0.85655 0.85214 0.81137 0.74960 0.90171 0.90058 0.87423 0.87180 0.85390 0.91856 0.86311 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.01 36.01 0.36 -0.30 16 2 C -0.11 -0.92 5.87 -104.68 -0.61 -1.54 16 3 C -0.08 -0.64 9.70 -39.43 -0.38 -1.02 16 4 C -0.14 -1.17 10.03 -39.65 -0.40 -1.57 16 5 C -0.07 -0.74 9.30 -39.10 -0.36 -1.10 16 6 C -0.16 -1.88 5.88 -104.91 -0.62 -2.50 16 7 C 0.39 4.95 7.17 -31.25 -0.22 4.73 16 8 O -0.42 -5.82 16.50 5.49 0.09 -5.73 16 9 C 0.48 6.41 7.84 -11.66 -0.09 6.32 16 10 O -0.51 -7.34 13.42 5.48 0.07 -7.27 16 11 N -0.69 -9.14 5.54 -61.96 -0.34 -9.49 16 12 C 0.16 2.26 5.80 -5.19 -0.03 2.23 16 13 C -0.08 -1.28 5.25 -104.65 -0.55 -1.83 16 14 C -0.19 -3.11 9.70 -39.54 -0.38 -3.49 16 15 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16 16 C -0.22 -4.63 9.17 -39.39 -0.36 -4.99 16 17 C 0.15 3.47 6.65 -39.11 -0.26 3.21 16 18 O -0.17 -4.85 9.76 0.06 0.00 -4.85 16 19 C -0.39 -10.74 9.49 30.89 0.29 -10.45 16 20 H 0.09 2.29 5.21 -52.49 -0.27 2.01 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 22 N -0.86 -24.82 13.67 55.48 0.76 -24.06 16 23 Si 0.94 20.12 29.55 -169.99 -5.02 15.09 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 27 C -0.17 -3.38 9.65 -39.39 -0.38 -3.76 16 28 C -0.06 -0.57 9.25 -39.10 -0.36 -0.93 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 31 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 34 H 0.17 1.94 4.85 -52.51 -0.25 1.69 16 35 H 0.41 5.43 7.94 -40.82 -0.32 5.11 16 36 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 37 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 38 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.13 2.65 5.65 -52.48 -0.30 2.36 16 41 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 42 H 0.12 2.33 8.06 -52.48 -0.42 1.90 16 43 H 0.13 1.27 7.67 -52.49 -0.40 0.87 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -30.81 376.43 -8.53 -39.34 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -4.90 Total: 8.99 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -4.86 Total: -17.70 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.42 Total: -33.55 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.16 Total: -17.85 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.81 -8.53 -39.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126123833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.002 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds