Wall clock time and date at job start Sat Apr 11 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38471 * 119.91026 * 2 1 4 4 C 1.38427 * 120.34776 * 179.97438 * 3 2 1 5 5 C 1.37864 * 120.17732 * 359.72470 * 4 3 2 6 6 C 1.39895 * 119.81957 * 0.54754 * 5 4 3 7 7 C 1.47403 * 120.16981 * 179.71876 * 6 5 4 8 8 O 1.21356 * 119.99680 * 173.59109 * 7 6 5 9 9 C 1.49289 * 120.00371 * 353.59844 * 7 6 5 10 10 O 1.21366 * 119.99769 * 5.17509 * 9 7 6 11 11 N 1.34770 * 120.00171 * 185.17622 * 9 7 6 12 12 C 1.46501 * 120.00062 * 180.02562 * 11 9 7 13 13 C 1.50702 * 109.47310 * 179.97438 * 12 11 9 14 14 C 1.38321 * 119.96773 * 269.97793 * 13 12 11 15 15 C 1.38276 * 120.13963 * 180.02562 * 14 13 12 16 16 C 1.38124 * 120.06743 * 359.67953 * 15 14 13 17 17 C 1.38861 * 119.93178 * 0.59303 * 16 15 14 18 18 O 1.35746 * 120.07031 * 179.69694 * 17 16 15 19 19 C 1.34830 * 116.99971 * 353.99847 * 18 17 16 20 20 H 1.07995 * 120.00116 * 5.04755 * 19 18 17 21 21 C 1.38662 * 119.99974 * 185.04584 * 19 18 17 22 22 N 1.31560 * 119.99872 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99899 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47171 * 59.99949 * 23 21 19 25 25 H 1.48502 * 109.47051 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47268 * 299.99780 * 23 21 19 27 27 C 1.38080 * 119.96266 * 89.99772 * 13 12 11 28 28 C 1.37831 * 119.91114 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47541 * 270.01764 * 1 2 3 30 30 H 1.09006 * 109.47184 * 30.02578 * 1 2 3 31 31 H 1.09005 * 109.46884 * 150.02113 * 1 2 3 32 32 H 1.07996 * 119.82550 * 359.95670 * 3 2 1 33 33 H 1.08006 * 119.91040 * 180.02562 * 4 3 2 34 34 H 1.08003 * 120.09331 * 180.28006 * 5 4 3 35 35 H 0.97003 * 119.99803 * 359.97438 * 11 9 7 36 36 H 1.09005 * 109.47354 * 59.99891 * 12 11 9 37 37 H 1.08999 * 109.47142 * 299.99781 * 12 11 9 38 38 H 1.08003 * 119.92800 * 0.02562 * 14 13 12 39 39 H 1.07997 * 119.96671 * 179.97438 * 15 14 13 40 40 H 1.08005 * 120.03399 * 180.32309 * 16 15 14 41 41 H 0.96995 * 120.00107 * 180.02562 * 22 21 19 42 42 H 1.08005 * 120.03851 * 359.97438 * 27 13 12 43 43 H 1.07994 * 120.09145 * 0.05288 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.2003 0.0000 4 6 3.5817 1.2109 0.0005 5 6 4.2838 0.0244 0.0068 6 6 3.5936 -1.1924 0.0010 7 6 4.3365 -2.4655 0.0014 8 8 3.7397 -3.5162 0.1137 9 6 5.8230 -2.4624 -0.1362 10 8 6.4286 -1.4108 -0.1539 11 7 6.4926 -3.6274 -0.2408 12 6 7.9514 -3.6243 -0.3753 13 6 8.4499 -5.0432 -0.4728 14 6 8.7889 -5.7368 0.6748 15 6 9.2471 -7.0386 0.5895 16 6 9.3615 -7.6526 -0.6425 17 6 9.0273 -6.9571 -1.7970 18 8 9.1445 -7.5557 -3.0097 19 6 9.7073 -8.7807 -3.0358 20 1 9.9665 -9.2757 -2.1116 21 6 9.9534 -9.4049 -4.2493 22 7 9.6371 -8.8021 -5.3751 23 14 10.7338 -11.1016 -4.2855 24 1 9.8654 -12.0615 -3.5578 25 1 10.8892 -11.5450 -5.6942 26 1 12.0668 -11.0473 -3.6333 27 6 8.5681 -5.6492 -1.7079 28 6 2.1943 -1.1947 0.0005 29 1 -0.3634 0.0003 1.0276 30 1 -0.3634 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6532 2.1331 -0.0007 33 1 4.1131 2.1511 0.0009 34 1 5.3638 0.0342 0.0118 35 1 6.0086 -4.4679 -0.2263 36 1 8.3956 -3.1426 0.4958 37 1 8.2321 -3.0776 -1.2755 38 1 8.6954 -5.2606 1.6397 39 1 9.5114 -7.5775 1.4873 40 1 9.7145 -8.6712 -0.7082 41 1 9.8088 -9.2388 -6.2239 42 1 8.3032 -5.1072 -2.6037 43 1 1.6544 -2.1300 0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001126123833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:21 Heat of formation + Delta-G solvation = -59.408117 kcal Electronic energy + Delta-G solvation = -26842.540584 eV Core-core repulsion = 22818.070838 eV Total energy + Delta-G solvation = -4024.469746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.94854 -40.87988 -40.06277 -39.38693 -38.50141 -36.04496 -34.30467 -33.81170 -32.36280 -32.20991 -30.82870 -28.47137 -27.75916 -27.27491 -26.14428 -23.43892 -23.21690 -22.77616 -22.38193 -21.14956 -19.63632 -18.99925 -18.48322 -18.02112 -17.40446 -17.09045 -16.76556 -16.40336 -16.38284 -16.22596 -16.04300 -15.54417 -15.37552 -15.27364 -14.97666 -14.83515 -14.51019 -14.33888 -14.18944 -13.98392 -13.70559 -13.37244 -13.06860 -13.02780 -12.89326 -12.79086 -12.61588 -12.52512 -12.42050 -12.30105 -12.15718 -11.88426 -11.24138 -10.82334 -10.56952 -10.37469 -10.03145 -9.78351 -9.68690 -9.05994 -8.48116 -6.16866 -0.78364 0.31622 0.39034 0.55996 0.67926 1.34807 1.44737 1.50966 1.65370 1.89469 2.16667 2.76814 2.78277 3.02592 3.18671 3.35446 3.57779 3.76705 3.87317 3.94733 4.06318 4.17625 4.27468 4.34776 4.37079 4.41234 4.49424 4.58523 4.67418 4.70277 4.84310 4.88895 4.94776 4.98144 5.05022 5.10190 5.22627 5.24040 5.32937 5.48520 5.54161 5.58668 5.66689 5.68705 5.74998 5.94326 5.99856 6.13421 6.22917 6.76610 6.96337 7.76129 8.74646 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019772 B = 0.001893 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.801648 B =14791.269676 C =15360.929974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.112 4.112 3 C -0.076 4.076 4 C -0.138 4.138 5 C -0.083 4.083 6 C -0.186 4.186 7 C 0.397 3.603 8 O -0.440 6.440 9 C 0.486 3.514 10 O -0.524 6.524 11 N -0.689 5.689 12 C 0.169 3.831 13 C -0.064 4.064 14 C -0.168 4.168 15 C -0.071 4.071 16 C -0.233 4.233 17 C 0.110 3.890 18 O -0.231 6.231 19 C -0.414 4.414 20 H 0.104 0.896 21 C -0.024 4.024 22 N -0.920 5.920 23 Si 1.018 2.982 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.257 1.257 27 C -0.181 4.181 28 C -0.069 4.069 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.415 0.585 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.121 0.879 41 H 0.272 0.728 42 H 0.109 0.891 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.580 18.045 14.888 27.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.112 4.112 3 C -0.094 4.094 4 C -0.156 4.156 5 C -0.100 4.100 6 C -0.188 4.188 7 C 0.272 3.728 8 O -0.314 6.314 9 C 0.270 3.730 10 O -0.402 6.402 11 N -0.341 5.341 12 C 0.047 3.953 13 C -0.065 4.065 14 C -0.187 4.187 15 C -0.088 4.088 16 C -0.253 4.253 17 C 0.060 3.940 18 O -0.138 6.138 19 C -0.490 4.490 20 H 0.121 0.879 21 C -0.221 4.221 22 N -0.558 5.558 23 Si 0.838 3.162 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.181 1.181 27 C -0.201 4.201 28 C -0.088 4.088 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.176 0.824 33 H 0.171 0.829 34 H 0.178 0.822 35 H 0.251 0.749 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.168 0.832 39 H 0.167 0.833 40 H 0.139 0.861 41 H 0.081 0.919 42 H 0.128 0.872 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.513 18.256 14.486 26.939 hybrid contribution 0.382 -1.512 -0.666 1.696 sum -13.131 16.744 13.820 25.372 Atomic orbital electron populations 1.20851 0.88681 1.03947 1.03430 1.20215 0.97938 0.92352 1.00664 1.21821 0.94399 0.98652 0.94511 1.21577 0.94679 0.98728 1.00582 1.22626 1.03185 0.91331 0.92893 1.20069 0.94554 0.93137 1.10991 1.22644 0.88531 0.89477 0.72190 1.90582 1.71481 1.34645 1.34665 1.20807 0.89571 0.84343 0.78315 1.90532 1.69539 1.30515 1.49624 1.46116 1.08452 1.09132 1.70421 1.20304 0.78418 0.92586 1.03952 1.19441 0.99868 0.95151 0.92043 1.21035 1.04552 0.94989 0.98092 1.21178 0.96186 0.95074 0.96406 1.21398 1.09314 1.01606 0.92932 1.19876 0.94893 0.92993 0.86244 1.83946 1.71580 1.32176 1.26112 1.21789 1.40470 0.91424 0.95299 0.87904 1.26604 0.97562 1.04552 0.93418 1.70179 1.46855 1.40449 0.98350 0.84649 0.78844 0.74532 0.78220 1.18123 1.19798 1.18087 1.20260 1.08541 0.92862 0.98421 1.21415 0.92198 0.99419 0.95736 0.90038 0.89640 0.91316 0.82425 0.82868 0.82212 0.74877 0.87876 0.90314 0.83179 0.83269 0.86100 0.91857 0.87249 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 71.24 0.71 -0.30 16 2 C -0.11 -1.64 5.87 -19.91 -0.12 -1.76 16 3 C -0.08 -0.94 9.70 22.37 0.22 -0.73 16 4 C -0.14 -2.04 10.03 22.23 0.22 -1.82 16 5 C -0.08 -1.68 9.30 22.58 0.21 -1.47 16 6 C -0.19 -4.21 5.88 -20.05 -0.12 -4.32 16 7 C 0.40 10.04 7.17 27.66 0.20 10.24 16 8 O -0.44 -12.35 16.50 -3.26 -0.05 -12.41 16 9 C 0.49 12.60 7.84 87.22 0.68 13.28 16 10 O -0.52 -14.52 13.42 -3.30 -0.04 -14.57 16 11 N -0.69 -17.52 5.54 -468.31 -2.59 -20.11 16 12 C 0.17 4.35 5.80 85.63 0.50 4.84 16 13 C -0.06 -2.01 5.25 -19.88 -0.10 -2.12 16 14 C -0.17 -4.73 9.70 22.30 0.22 -4.52 16 15 C -0.07 -2.22 10.04 22.25 0.22 -2.00 16 16 C -0.23 -9.65 9.17 22.39 0.21 -9.44 16 17 C 0.11 5.32 6.65 22.58 0.15 5.47 16 18 O -0.23 -13.74 9.76 -22.70 -0.22 -13.96 16 19 C -0.41 -23.77 9.49 67.92 0.64 -23.12 16 20 H 0.10 5.36 5.21 -2.91 -0.02 5.35 16 21 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 22 N -0.92 -56.37 13.67 21.62 0.30 -56.08 16 23 Si 1.02 42.45 29.55 68.60 2.03 44.48 16 24 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 27 C -0.18 -7.41 9.65 22.39 0.22 -7.19 16 28 C -0.07 -1.36 9.25 22.58 0.21 -1.15 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.49 8.08 -2.38 -0.02 0.47 16 31 H 0.07 0.63 8.08 -2.38 -0.02 0.62 16 32 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 33 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.16 3.57 4.85 -3.34 -0.02 3.56 16 35 H 0.41 10.56 7.94 -92.71 -0.74 9.83 16 36 H 0.10 2.25 8.08 -2.38 -0.02 2.23 16 37 H 0.08 2.11 8.08 -2.39 -0.02 2.09 16 38 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 39 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 40 H 0.12 5.09 5.65 -2.91 -0.02 5.08 16 41 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 42 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 43 H 0.13 2.52 7.67 -2.91 -0.02 2.50 16 Total: -1.00 -72.63 376.43 4.47 -68.15 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: 0.33 Total: 31.48 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 4.73 Total: -26.99 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -2.30 Total: -76.19 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -0.32 Total: -40.94 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -72.63 4.47 -68.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126123833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.746 kcal (2) G-P(sol) polarization free energy of solvation -72.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds