Wall clock time and date at job start Sat Apr 11 2020 05:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47155 * 2 1 4 4 C 1.52999 * 109.47155 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46794 * 179.97438 * 4 3 2 6 6 C 1.37097 * 120.00072 * 263.24954 * 5 4 3 7 7 H 1.08004 * 120.00191 * 188.09919 * 6 5 4 8 8 C 1.38950 * 120.00231 * 8.09369 * 6 5 4 9 9 N 1.31412 * 119.99556 * 26.09411 * 8 6 5 10 10 Si 1.86801 * 120.00311 * 206.09074 * 8 6 5 11 11 H 1.48502 * 109.46959 * 84.98986 * 10 8 6 12 12 H 1.48506 * 109.46853 * 204.98819 * 10 8 6 13 13 H 1.48500 * 109.46916 * 324.98529 * 10 8 6 14 14 C 1.34778 * 119.99859 * 83.25366 * 5 4 3 15 15 O 1.21283 * 120.00084 * 359.97438 * 14 5 4 16 16 C 1.50699 * 120.00001 * 179.97438 * 14 5 4 17 17 C 1.50697 * 109.47383 * 179.97438 * 16 14 5 18 18 C 1.38252 * 120.00438 * 270.02325 * 17 16 14 19 19 C 1.38214 * 120.00464 * 179.97438 * 18 17 16 20 20 C 1.38262 * 119.99464 * 359.95936 * 19 18 17 21 21 C 1.38210 * 119.99966 * 0.06937 * 20 19 18 22 22 S 1.76203 * 119.99495 * 179.97438 * 21 20 19 23 23 C 1.81402 * 104.44774 * 269.94803 * 22 21 20 24 24 O 1.42101 * 104.28159 * 26.01950 * 22 21 20 25 25 O 1.42103 * 104.27740 * 153.87991 * 22 21 20 26 26 C 1.38216 * 119.99600 * 89.99968 * 17 16 14 27 27 H 1.08998 * 109.47242 * 60.00388 * 1 2 3 28 28 H 1.08999 * 109.47027 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47285 * 299.99969 * 1 2 3 30 30 H 1.08996 * 109.47134 * 239.99498 * 2 1 3 31 31 H 1.09005 * 109.46959 * 119.99903 * 2 1 3 32 32 H 1.08996 * 109.47510 * 59.99728 * 3 2 1 33 33 H 1.09005 * 109.47108 * 299.99812 * 3 2 1 34 34 H 1.08996 * 109.47285 * 60.00031 * 4 3 2 35 35 H 1.08998 * 109.47242 * 299.99612 * 4 3 2 36 36 H 0.97007 * 120.00053 * 180.02562 * 9 8 6 37 37 H 1.09007 * 109.46812 * 59.99899 * 16 14 5 38 38 H 1.09008 * 109.47173 * 300.00402 * 16 14 5 39 39 H 1.08005 * 119.99709 * 359.97438 * 18 17 16 40 40 H 1.07999 * 120.00245 * 179.97438 * 19 18 17 41 41 H 1.08002 * 119.99411 * 179.97438 * 20 19 18 42 42 H 1.09003 * 109.46883 * 60.00161 * 23 22 21 43 43 H 1.09004 * 109.47279 * 180.02562 * 23 22 21 44 44 H 1.08999 * 109.47644 * 300.00413 * 23 22 21 45 45 H 1.07995 * 120.00049 * 359.72839 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0582 2.8237 0.0000 6 6 4.4188 3.4228 -1.1792 7 1 4.8999 4.3897 -1.1688 8 6 4.1653 2.7861 -2.3880 9 7 3.1798 1.9218 -2.4812 10 14 5.2252 3.1587 -3.8803 11 1 6.4410 2.3065 -3.8492 12 1 4.4544 2.8764 -5.1178 13 1 5.6228 4.5894 -3.8603 14 6 4.1531 3.5055 1.1588 15 8 3.8337 2.9756 2.2020 16 6 4.6559 4.9261 1.1583 17 6 4.6646 5.4565 2.5688 18 6 3.5478 6.0959 3.0739 19 6 3.5556 6.5819 4.3678 20 6 4.6802 6.4277 5.1573 21 6 5.7969 5.7890 4.6521 22 16 7.2302 5.5931 5.6580 23 6 8.2167 7.0808 5.3348 24 8 6.7296 5.6060 6.9879 25 8 7.8751 4.4426 5.1291 26 6 5.7891 5.3031 3.3577 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9330 0.9289 0.8909 36 1 3.0030 1.4769 -3.3249 37 1 4.0011 5.5430 0.5426 38 1 5.6675 4.9534 0.7531 39 1 2.6691 6.2157 2.4574 40 1 2.6833 7.0818 4.7622 41 1 4.6865 6.8078 6.1682 42 1 7.6425 7.9648 5.6122 43 1 9.1338 7.0435 5.9228 44 1 8.4667 7.1279 4.2749 45 1 6.6598 4.7994 2.9648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180003611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:42 Heat of formation + Delta-G solvation = -78.516521 kcal Electronic energy + Delta-G solvation = -27456.525503 eV Core-core repulsion = 23566.671105 eV Total energy + Delta-G solvation = -3889.854398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -39.47496 -38.25530 -37.09746 -35.93293 -35.36834 -33.68466 -32.49539 -31.52987 -31.12733 -29.65741 -28.74136 -26.88159 -24.83710 -23.13936 -22.89580 -21.53250 -20.15450 -19.19924 -18.77721 -17.62346 -16.65525 -16.27047 -16.11402 -15.99464 -15.86779 -15.01785 -14.48333 -14.38319 -14.31737 -13.97130 -13.88361 -13.51957 -13.37721 -12.99394 -12.89777 -12.87219 -12.35493 -12.10209 -12.07644 -12.01064 -11.94086 -11.81024 -11.68410 -11.24160 -11.21593 -11.12085 -11.00365 -10.62984 -10.50239 -10.45431 -10.34800 -10.26322 -10.07593 -9.48679 -9.15506 -8.87960 -8.77019 -8.27381 -7.81745 -6.46364 -3.90623 0.02079 1.02794 1.49432 2.85662 3.05814 3.17712 3.18096 3.55990 3.84876 3.96056 4.03769 4.06232 4.57665 4.69223 4.82231 4.95081 4.99207 5.03631 5.19913 5.41126 5.43979 5.57733 5.70170 5.74226 5.76071 5.92499 5.98529 6.10079 6.16369 6.21696 6.29232 6.43030 6.43804 6.47417 6.63419 6.69725 6.76490 6.84259 7.01975 7.03836 7.05173 7.29224 7.44655 7.68785 7.76571 8.37534 9.01620 9.49459 9.91465 10.52493 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012949 B = 0.003145 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.736385 B = 8899.494703 C = 9941.404136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.112 4.112 4 C 0.139 3.861 5 N -0.438 5.438 6 C -0.344 4.344 7 H 0.100 0.900 8 C 0.041 3.959 9 N -0.846 5.846 10 Si 0.912 3.088 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.451 3.549 15 O -0.603 6.603 16 C -0.090 4.090 17 C -0.060 4.060 18 C -0.052 4.052 19 C -0.140 4.140 20 C -0.038 4.038 21 C -0.658 4.658 22 S 2.501 3.499 23 C -0.652 4.652 24 O -0.943 6.943 25 O -0.936 6.936 26 C -0.013 4.013 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.034 0.966 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.036 0.964 36 H 0.269 0.731 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.135 0.865 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.184 10.219 7.615 13.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.150 4.150 4 C 0.016 3.984 5 N -0.155 5.155 6 C -0.471 4.471 7 H 0.118 0.882 8 C -0.165 4.165 9 N -0.483 5.483 10 Si 0.739 3.261 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.196 1.196 14 C 0.240 3.760 15 O -0.489 6.489 16 C -0.130 4.130 17 C -0.061 4.061 18 C -0.070 4.070 19 C -0.159 4.159 20 C -0.057 4.057 21 C -0.746 4.746 22 S 2.682 3.318 23 C -0.801 4.801 24 O -0.940 6.940 25 O -0.933 6.933 26 C -0.032 4.032 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.123 9.127 8.481 13.124 hybrid contribution 0.051 0.750 -1.603 1.770 sum 4.174 9.877 6.878 12.739 Atomic orbital electron populations 1.21719 0.97100 1.00117 1.01275 1.21357 0.94640 0.98550 1.00609 1.21790 0.96344 0.95073 1.01817 1.21268 0.93924 0.82956 1.00277 1.43803 1.54894 1.11399 1.05400 1.19632 1.38765 1.05688 0.83022 0.88238 1.25152 0.95571 0.96921 0.98848 1.70155 1.23865 1.27668 1.26639 0.86189 0.80341 0.79019 0.80577 1.20244 1.21061 1.19574 1.19759 0.84669 0.87436 0.84182 1.90570 1.56107 1.70437 1.31835 1.20547 1.03664 0.96472 0.92322 1.19734 0.93537 0.96426 0.96402 1.21354 0.97095 0.93294 0.95242 1.21177 0.98410 1.01889 0.94450 1.20773 0.91945 0.94179 0.98821 1.30280 1.18846 1.15466 1.10001 1.05049 0.75419 0.76721 0.74659 1.30246 1.15391 1.21901 1.12572 1.93562 1.78996 1.86873 1.34587 1.93604 1.75644 1.44042 1.79986 1.20768 0.98892 0.92559 0.91028 0.92946 0.93936 0.93533 0.92265 0.93681 0.94716 0.88864 0.88778 0.94610 0.92041 0.88797 0.88998 0.85500 0.85454 0.84700 0.85140 0.85326 0.84944 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.91 37.16 0.37 -2.01 16 2 C -0.11 -2.16 5.93 -26.73 -0.16 -2.31 16 3 C -0.11 -2.51 5.02 -26.73 -0.13 -2.65 16 4 C 0.14 3.34 4.52 -4.04 -0.02 3.32 16 5 N -0.44 -10.70 2.64 -114.81 -0.30 -11.00 16 6 C -0.34 -8.20 9.25 -14.93 -0.14 -8.34 16 7 H 0.10 2.21 6.47 -52.48 -0.34 1.87 16 8 C 0.04 0.96 4.88 -17.47 -0.09 0.88 16 9 N -0.85 -20.36 8.72 55.50 0.48 -19.87 16 10 Si 0.91 18.39 29.63 -169.99 -5.04 13.35 16 11 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 13 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 14 C 0.45 10.65 7.57 -10.99 -0.08 10.57 16 15 O -0.60 -15.96 15.73 5.56 0.09 -15.87 16 16 C -0.09 -1.68 4.21 -29.04 -0.12 -1.80 16 17 C -0.06 -1.02 4.37 -104.63 -0.46 -1.48 16 18 C -0.05 -0.79 9.70 -39.59 -0.38 -1.18 16 19 C -0.14 -1.85 10.05 -39.58 -0.40 -2.25 16 20 C -0.04 -0.49 9.47 -39.58 -0.37 -0.87 16 21 C -0.66 -9.09 5.66 -39.59 -0.22 -9.31 16 22 S 2.50 28.73 5.80 -107.50 -0.62 28.11 16 23 C -0.65 -4.07 10.80 101.05 1.09 -2.98 16 24 O -0.94 -13.25 17.13 -57.54 -0.99 -14.23 16 25 O -0.94 -14.49 17.13 -57.54 -0.99 -15.47 16 26 C -0.01 -0.22 9.13 -39.58 -0.36 -0.58 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 2.26 6.42 -51.93 -0.33 1.93 16 34 H 0.09 2.33 5.81 -51.93 -0.30 2.03 16 35 H 0.04 0.88 7.63 -51.93 -0.40 0.49 16 36 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 37 H 0.09 1.63 7.96 -51.93 -0.41 1.21 16 38 H 0.09 1.56 7.74 -51.92 -0.40 1.16 16 39 H 0.13 1.79 8.06 -52.48 -0.42 1.36 16 40 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 41 H 0.14 1.40 7.57 -52.49 -0.40 1.00 16 42 H 0.13 0.59 8.14 -51.92 -0.42 0.16 16 43 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 44 H 0.13 0.69 8.14 -51.92 -0.42 0.26 16 45 H 0.14 2.10 7.57 -52.49 -0.40 1.70 16 LS Contribution 383.43 15.07 5.78 5.78 Total: -1.00 -33.45 383.43 -9.83 -43.28 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.77 Total: 6.92 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -1.48 Total: -20.99 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: 0.18 Total: -30.87 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -1.88 Total: -45.57 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.04 Total: 13.35 kcal Atomic # 16 Polarization: 28.73 SS G_CDS: -0.62 Total: 28.11 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.45 -9.83 -43.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180003611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.237 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds