Wall clock time and date at job start Sat Apr 11 2020 05:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47155 * 2 1 4 4 C 1.52999 * 109.47155 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46794 * 179.97438 * 4 3 2 6 6 C 1.37097 * 120.00072 * 263.24954 * 5 4 3 7 7 H 1.08004 * 120.00191 * 188.09919 * 6 5 4 8 8 C 1.38950 * 120.00231 * 8.09369 * 6 5 4 9 9 N 1.31412 * 119.99556 * 26.09411 * 8 6 5 10 10 Si 1.86801 * 120.00311 * 206.09074 * 8 6 5 11 11 H 1.48502 * 109.46959 * 84.98986 * 10 8 6 12 12 H 1.48506 * 109.46853 * 204.98819 * 10 8 6 13 13 H 1.48500 * 109.46916 * 324.98529 * 10 8 6 14 14 C 1.34778 * 119.99859 * 83.25366 * 5 4 3 15 15 O 1.21283 * 120.00084 * 359.97438 * 14 5 4 16 16 C 1.50699 * 120.00001 * 179.97438 * 14 5 4 17 17 C 1.50697 * 109.47383 * 179.97438 * 16 14 5 18 18 C 1.38252 * 120.00438 * 270.02325 * 17 16 14 19 19 C 1.38214 * 120.00464 * 179.97438 * 18 17 16 20 20 C 1.38262 * 119.99464 * 359.95936 * 19 18 17 21 21 C 1.38210 * 119.99966 * 0.06937 * 20 19 18 22 22 S 1.76203 * 119.99495 * 179.97438 * 21 20 19 23 23 C 1.81402 * 104.44774 * 269.94803 * 22 21 20 24 24 O 1.42101 * 104.28159 * 26.01950 * 22 21 20 25 25 O 1.42103 * 104.27740 * 153.87991 * 22 21 20 26 26 C 1.38216 * 119.99600 * 89.99968 * 17 16 14 27 27 H 1.08998 * 109.47242 * 60.00388 * 1 2 3 28 28 H 1.08999 * 109.47027 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47285 * 299.99969 * 1 2 3 30 30 H 1.08996 * 109.47134 * 239.99498 * 2 1 3 31 31 H 1.09005 * 109.46959 * 119.99903 * 2 1 3 32 32 H 1.08996 * 109.47510 * 59.99728 * 3 2 1 33 33 H 1.09005 * 109.47108 * 299.99812 * 3 2 1 34 34 H 1.08996 * 109.47285 * 60.00031 * 4 3 2 35 35 H 1.08998 * 109.47242 * 299.99612 * 4 3 2 36 36 H 0.97007 * 120.00053 * 180.02562 * 9 8 6 37 37 H 1.09007 * 109.46812 * 59.99899 * 16 14 5 38 38 H 1.09008 * 109.47173 * 300.00402 * 16 14 5 39 39 H 1.08005 * 119.99709 * 359.97438 * 18 17 16 40 40 H 1.07999 * 120.00245 * 179.97438 * 19 18 17 41 41 H 1.08002 * 119.99411 * 179.97438 * 20 19 18 42 42 H 1.09003 * 109.46883 * 60.00161 * 23 22 21 43 43 H 1.09004 * 109.47279 * 180.02562 * 23 22 21 44 44 H 1.08999 * 109.47644 * 300.00413 * 23 22 21 45 45 H 1.07995 * 120.00049 * 359.72839 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0582 2.8237 0.0000 6 6 4.4188 3.4228 -1.1792 7 1 4.8999 4.3897 -1.1688 8 6 4.1653 2.7861 -2.3880 9 7 3.1798 1.9218 -2.4812 10 14 5.2252 3.1587 -3.8803 11 1 6.4410 2.3065 -3.8492 12 1 4.4544 2.8764 -5.1178 13 1 5.6228 4.5894 -3.8603 14 6 4.1531 3.5055 1.1588 15 8 3.8337 2.9756 2.2020 16 6 4.6559 4.9261 1.1583 17 6 4.6646 5.4565 2.5688 18 6 3.5478 6.0959 3.0739 19 6 3.5556 6.5819 4.3678 20 6 4.6802 6.4277 5.1573 21 6 5.7969 5.7890 4.6521 22 16 7.2302 5.5931 5.6580 23 6 8.2167 7.0808 5.3348 24 8 6.7296 5.6060 6.9879 25 8 7.8751 4.4426 5.1291 26 6 5.7891 5.3031 3.3577 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9330 0.9289 0.8909 36 1 3.0030 1.4769 -3.3249 37 1 4.0011 5.5430 0.5426 38 1 5.6675 4.9534 0.7531 39 1 2.6691 6.2157 2.4574 40 1 2.6833 7.0818 4.7622 41 1 4.6865 6.8078 6.1682 42 1 7.6425 7.9648 5.6122 43 1 9.1338 7.0435 5.9228 44 1 8.4667 7.1279 4.2749 45 1 6.6598 4.7994 2.9648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180003611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:39 Heat of formation + Delta-G solvation = -99.608058 kcal Electronic energy + Delta-G solvation = -27457.440101 eV Core-core repulsion = 23566.671105 eV Total energy + Delta-G solvation = -3890.768995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -40.92139 -39.79132 -38.11282 -37.19978 -36.94537 -35.37516 -33.83200 -33.37198 -32.20693 -30.36283 -30.22128 -28.33201 -26.65961 -24.52752 -24.18084 -22.79739 -21.85389 -20.98674 -19.81787 -18.93259 -18.18233 -17.88696 -17.17653 -17.07302 -16.91973 -16.25416 -16.21993 -16.04241 -15.97793 -15.49831 -15.11491 -14.60127 -14.41330 -14.13652 -14.02794 -13.90554 -13.71920 -13.66415 -13.43822 -13.28656 -13.19173 -13.11932 -13.00044 -12.87724 -12.77060 -12.41044 -12.17060 -12.12163 -12.06694 -11.98979 -11.90782 -11.73081 -11.48150 -11.30991 -10.75920 -10.44162 -10.20443 -9.74512 -9.68769 -8.28129 -5.79092 -0.81430 -0.08133 0.34838 1.43335 1.52448 1.60381 1.94537 2.04241 2.30414 2.47565 3.03921 3.11540 3.16916 3.23150 3.75781 3.89679 4.08950 4.14448 4.16249 4.22916 4.24506 4.31982 4.36757 4.42989 4.48159 4.57566 4.69082 4.72721 4.86854 4.91195 4.98145 5.00834 5.02964 5.04731 5.10314 5.17168 5.24821 5.32235 5.37448 5.46472 5.55610 5.59047 5.81699 5.87207 5.93760 6.50627 7.15851 7.63188 8.05930 8.71312 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012949 B = 0.003145 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.736385 B = 8899.494703 C = 9941.404136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C -0.096 4.096 4 C 0.140 3.860 5 N -0.449 5.449 6 C -0.367 4.367 7 H 0.114 0.886 8 C 0.004 3.996 9 N -0.866 5.866 10 Si 0.981 3.019 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.259 1.259 14 C 0.437 3.563 15 O -0.640 6.640 16 C -0.078 4.078 17 C -0.086 4.086 18 C -0.069 4.069 19 C -0.138 4.138 20 C -0.040 4.040 21 C -0.662 4.662 22 S 2.503 3.497 23 C -0.616 4.616 24 O -0.974 6.974 25 O -0.987 6.987 26 C -0.035 4.035 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.012 0.988 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.018 0.982 36 H 0.271 0.729 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.132 0.868 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.150 0.850 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.896 12.437 7.769 15.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C -0.134 4.134 4 C 0.017 3.983 5 N -0.166 5.166 6 C -0.493 4.493 7 H 0.131 0.869 8 C -0.200 4.200 9 N -0.503 5.503 10 Si 0.805 3.195 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.183 1.183 14 C 0.227 3.773 15 O -0.530 6.530 16 C -0.118 4.118 17 C -0.087 4.087 18 C -0.087 4.087 19 C -0.156 4.156 20 C -0.058 4.058 21 C -0.748 4.748 22 S 2.687 3.313 23 C -0.771 4.771 24 O -0.971 6.971 25 O -0.984 6.984 26 C -0.054 4.054 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.149 0.851 40 H 0.178 0.822 41 H 0.182 0.818 42 H 0.178 0.822 43 H 0.175 0.825 44 H 0.169 0.831 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.784 11.316 8.619 15.008 hybrid contribution -0.136 0.104 -1.590 1.599 sum 4.648 11.420 7.030 14.193 Atomic orbital electron populations 1.21661 0.94727 1.01944 1.01238 1.21320 0.96727 0.95983 1.00714 1.21597 0.95131 0.97053 0.99625 1.21211 0.94965 0.83341 0.98773 1.44073 1.54874 1.11468 1.06182 1.20024 1.39582 1.06666 0.83029 0.86872 1.25953 0.96108 0.96768 1.01193 1.70238 1.24529 1.28182 1.27375 0.85137 0.78146 0.79267 0.76960 1.20636 1.21113 1.18284 1.20624 0.84162 0.89216 0.83321 1.90522 1.57706 1.71761 1.33005 1.20433 1.04034 0.93123 0.94209 1.19734 0.94935 0.98126 0.95921 1.21548 0.96770 0.93829 0.96568 1.21575 0.99632 1.00985 0.93432 1.21231 0.91342 0.93277 0.99963 1.30633 1.20569 1.14443 1.09110 1.04938 0.74924 0.78120 0.73311 1.29979 1.14971 1.17641 1.14471 1.93516 1.79792 1.88100 1.35704 1.93542 1.75930 1.48548 1.80378 1.20830 0.98694 0.93600 0.92268 0.93086 0.91165 0.93477 0.92247 0.93408 0.96906 0.90598 0.89629 0.96345 0.91869 0.87876 0.87876 0.85054 0.82182 0.81817 0.82154 0.82523 0.83118 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 9.91 71.98 0.71 -3.72 16 2 C -0.11 -4.21 5.93 30.59 0.18 -4.02 16 3 C -0.10 -4.47 5.02 30.59 0.15 -4.32 16 4 C 0.14 7.09 4.52 86.38 0.39 7.48 16 5 N -0.45 -22.81 2.64 -635.55 -1.68 -24.49 16 6 C -0.37 -17.74 9.25 84.04 0.78 -16.96 16 7 H 0.11 5.02 6.47 -2.91 -0.02 5.00 16 8 C 0.00 0.19 4.88 84.93 0.41 0.60 16 9 N -0.87 -42.22 8.72 21.66 0.19 -42.04 16 10 Si 0.98 37.43 29.63 68.60 2.03 39.46 16 11 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 12 H -0.29 -10.86 7.11 99.48 0.71 -10.16 16 13 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 14 C 0.44 21.52 7.57 87.66 0.66 22.19 16 15 O -0.64 -35.68 15.73 -3.04 -0.05 -35.72 16 16 C -0.08 -3.00 4.21 29.10 0.12 -2.88 16 17 C -0.09 -3.00 4.37 -19.87 -0.09 -3.09 16 18 C -0.07 -2.12 9.70 22.27 0.22 -1.90 16 19 C -0.14 -3.42 10.05 22.27 0.22 -3.20 16 20 C -0.04 -0.96 9.47 22.27 0.21 -0.74 16 21 C -0.66 -17.85 5.66 22.27 0.13 -17.72 16 22 S 2.50 54.85 5.80 -56.49 -0.33 54.53 16 23 C -0.62 -5.10 10.80 113.37 1.22 -3.88 16 24 O -0.97 -26.35 17.13 -127.65 -2.19 -28.54 16 25 O -0.99 -31.19 17.13 -127.65 -2.19 -33.37 16 26 C -0.04 -1.15 9.13 22.27 0.20 -0.94 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 3.82 6.42 -2.38 -0.02 3.80 16 34 H 0.09 4.43 5.81 -2.39 -0.01 4.41 16 35 H 0.02 0.96 7.63 -2.39 -0.02 0.94 16 36 H 0.27 12.54 8.31 -92.70 -0.77 11.76 16 37 H 0.10 3.65 7.96 -2.38 -0.02 3.63 16 38 H 0.10 3.60 7.74 -2.38 -0.02 3.58 16 39 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 40 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 41 H 0.16 2.93 7.57 -2.91 -0.02 2.91 16 42 H 0.16 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.16 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.13 4.26 7.57 -2.91 -0.02 4.24 16 Total: -1.00 -76.15 383.43 2.31 -73.84 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.98 Total: 29.45 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 5.53 Total: -33.11 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -1.49 Total: -66.53 kcal Atomic # 8 Polarization: -93.22 SS G_CDS: -4.42 Total: -97.64 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal Atomic # 16 Polarization: 54.85 SS G_CDS: -0.33 Total: 54.53 kcal Total: -76.15 2.31 -73.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180003611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.769 kcal (2) G-P(sol) polarization free energy of solvation -76.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds