Wall clock time and date at job start Sat Apr 11 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35905 * 117.00216 * 2 1 4 4 C 1.38751 * 120.05444 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94645 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05214 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94047 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47238 * 300.00039 * 7 6 5 9 9 C 1.52992 * 109.47161 * 60.00575 * 7 6 5 10 10 C 1.38241 * 120.11181 * 0.25948 * 6 5 4 11 11 C 1.38163 * 120.05609 * 359.44535 * 10 6 5 12 12 S 1.76198 * 120.02954 * 180.25260 * 11 10 6 13 13 O 1.42103 * 106.40451 * 228.86367 * 12 11 10 14 14 O 1.42105 * 106.40206 * 1.78021 * 12 11 10 15 15 N 1.65595 * 107.21923 * 115.32050 * 12 11 10 16 16 C 1.47065 * 136.05916 * 269.62763 * 15 12 11 17 17 C 1.53757 * 87.88931 * 152.96532 * 16 15 12 18 18 C 1.50702 * 114.26736 * 139.79329 * 17 16 15 19 19 H 1.07994 * 119.99868 * 266.47538 * 18 17 16 20 20 C 1.37874 * 119.99694 * 86.47700 * 18 17 16 21 21 N 1.31510 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99699 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47230 * 60.00003 * 22 20 18 24 24 H 1.48506 * 109.47126 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47434 * 300.00278 * 22 20 18 26 26 C 1.47067 * 136.05838 * 90.00231 * 15 12 11 27 27 H 1.08995 * 109.47439 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46792 * 300.00437 * 1 2 3 29 29 H 1.08999 * 109.47054 * 60.00204 * 1 2 3 30 30 H 1.08002 * 120.02981 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.97583 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.46456 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.46832 * 60.00314 * 8 7 6 35 35 H 1.09004 * 109.47261 * 300.00295 * 8 7 6 36 36 H 1.09001 * 109.47066 * 299.99783 * 9 7 6 37 37 H 1.08996 * 109.47747 * 59.99449 * 9 7 6 38 38 H 1.09002 * 109.47103 * 179.97438 * 9 7 6 39 39 H 1.08001 * 119.97236 * 179.72912 * 10 6 5 40 40 H 1.08996 * 113.47032 * 267.69729 * 16 15 12 41 41 H 1.09001 * 113.46838 * 38.13837 * 16 15 12 42 42 H 1.09002 * 114.39680 * 272.68062 * 17 16 15 43 43 H 0.97007 * 119.99806 * 180.02562 * 21 20 18 44 44 H 1.09001 * 113.46357 * 321.86812 * 26 15 12 45 45 H 1.09005 * 113.46877 * 92.24131 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3019 3.6757 0.0005 7 6 3.9861 5.0186 0.0005 8 6 3.5755 5.8002 -1.2490 9 6 3.5746 5.8006 1.2495 10 6 4.0559 2.5171 -0.0049 11 6 3.4311 1.2848 0.0007 12 16 4.3929 -0.1915 0.0006 13 8 3.8564 -1.0198 -1.0219 14 8 5.7537 0.2161 0.0364 15 7 4.0994 -0.9679 1.4335 16 6 4.6906 -0.9647 2.7801 17 6 3.3134 -1.3793 3.3238 18 6 3.3659 -2.4084 4.4235 19 1 3.2815 -3.4583 4.1849 20 6 3.5216 -2.0095 5.7340 21 7 3.6238 -0.7310 6.0245 22 14 3.5859 -3.2851 7.0971 23 1 4.7299 -4.2025 6.8630 24 1 3.7583 -2.6035 8.4052 25 1 2.3213 -4.0635 7.1068 26 6 3.1371 -1.9691 1.9177 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2128 2.3204 -0.0005 31 1 1.3340 4.5114 0.0000 32 1 5.0667 4.8757 0.0015 33 1 4.0707 6.7712 -1.2492 34 1 2.4949 5.9430 -1.2494 35 1 3.8687 5.2430 -2.1388 36 1 2.4940 5.9434 1.2491 37 1 3.8671 5.2438 2.1397 38 1 4.0698 6.7716 1.2497 39 1 5.1344 2.5752 -0.0089 40 1 5.4588 -1.7253 2.9187 41 1 5.0102 0.0233 3.1114 42 1 2.6472 -0.5455 3.5455 43 1 3.7337 -0.4504 6.9466 44 1 2.1332 -1.8368 1.5142 45 1 3.4954 -2.9946 1.8280 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191655907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:50 Heat of formation + Delta-G solvation = -57.964044 kcal Electronic energy + Delta-G solvation = -28378.716652 eV Core-core repulsion = 24489.753476 eV Total energy + Delta-G solvation = -3888.963175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.36119 -38.31480 -38.07335 -36.58746 -35.32385 -34.91184 -32.57167 -31.39285 -29.52758 -28.21032 -27.29722 -27.23923 -24.82913 -24.46352 -23.75601 -22.55443 -20.67749 -19.71113 -18.55334 -17.93919 -17.11383 -16.65496 -16.41990 -16.13150 -15.72255 -15.28578 -15.01399 -14.59723 -14.54583 -14.31964 -13.86105 -13.71478 -13.68105 -12.95513 -12.92174 -12.78876 -12.60619 -12.33125 -12.19581 -11.78189 -11.63026 -11.60135 -11.51084 -11.45651 -11.37820 -11.29182 -11.24476 -10.94415 -10.91198 -10.88255 -10.59220 -10.37173 -10.16624 -9.40214 -9.11666 -9.02140 -8.52913 -8.26666 -8.08209 -6.11192 -4.15623 0.75763 1.03837 1.32125 3.12414 3.29095 3.34112 3.34456 3.37381 3.67298 4.22294 4.38340 4.45361 4.57755 4.72516 4.82785 4.91632 5.04334 5.05593 5.13026 5.19122 5.27223 5.30827 5.44462 5.47689 5.49231 5.58180 5.65227 5.75515 5.81905 5.94193 6.01055 6.03809 6.10429 6.12126 6.27164 6.41481 6.43014 6.53340 6.61229 6.65435 6.85011 6.93659 7.17707 7.59714 7.72388 7.87407 8.29284 8.87782 9.49916 10.98408 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.003839 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.169587 B = 7291.563019 C = 7832.946106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.303 6.303 3 C 0.227 3.773 4 C -0.227 4.227 5 C -0.025 4.025 6 C -0.139 4.139 7 C -0.053 4.053 8 C -0.144 4.144 9 C -0.146 4.146 10 C 0.016 3.984 11 C -0.699 4.699 12 S 2.718 3.282 13 O -0.960 6.960 14 O -0.971 6.971 15 N -1.043 6.043 16 C 0.131 3.869 17 C 0.036 3.964 18 C -0.516 4.516 19 H 0.063 0.937 20 C 0.068 3.932 21 N -0.887 5.887 22 Si 0.894 3.106 23 H -0.275 1.275 24 H -0.288 1.288 25 H -0.276 1.276 26 C 0.131 3.869 27 H 0.107 0.893 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.145 0.855 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.263 0.737 44 H 0.059 0.941 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.463 11.130 -11.586 16.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.214 6.214 3 C 0.179 3.821 4 C -0.246 4.246 5 C -0.043 4.043 6 C -0.140 4.140 7 C -0.071 4.071 8 C -0.202 4.202 9 C -0.203 4.203 10 C -0.004 4.004 11 C -0.784 4.784 12 S 2.810 3.190 13 O -0.950 6.950 14 O -0.962 6.962 15 N -0.884 5.884 16 C 0.006 3.994 17 C 0.015 3.985 18 C -0.555 4.555 19 H 0.081 0.919 20 C -0.135 4.135 21 N -0.524 5.524 22 Si 0.721 3.279 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.202 1.202 26 C 0.006 3.994 27 H 0.126 0.874 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.153 0.847 31 H 0.146 0.854 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.163 0.837 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.782 10.925 -12.347 17.166 hybrid contribution -0.693 0.151 1.031 1.251 sum -5.474 11.076 -11.316 16.754 Atomic orbital electron populations 1.23172 0.77317 1.04846 1.01430 1.86189 1.22456 1.25974 1.86814 1.18315 0.90486 0.84937 0.88381 1.21262 1.00220 0.92239 1.10890 1.20964 0.94076 0.96951 0.92357 1.19820 0.93676 0.94922 1.05564 1.20068 1.00000 0.91268 0.95807 1.21877 1.01400 0.99689 0.97189 1.21879 1.01387 0.99682 0.97350 1.20714 1.00283 0.89598 0.89768 1.30418 1.04407 1.20329 1.23268 1.00897 0.72938 0.73081 0.72039 1.93533 1.80590 1.65822 1.55098 1.93513 1.32209 1.83778 1.86714 1.59753 1.47957 1.54122 1.26606 1.23084 1.00414 1.00178 0.75689 1.20489 0.92085 0.96440 0.89515 1.20968 1.50871 0.92851 0.90775 0.91915 1.25019 0.94495 0.95230 0.98775 1.69948 1.48689 1.14380 1.19377 0.86636 0.78744 0.81520 0.80959 1.20076 1.21343 1.20159 1.22784 0.90391 0.90779 0.95456 0.87432 0.91984 0.92481 0.84742 0.85393 0.90078 0.92331 0.92646 0.92488 0.92642 0.92074 0.92357 0.83689 0.90959 0.92571 0.91662 0.92713 0.92280 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.30 -4.85 8.30 -29.09 -0.24 -5.09 16 3 C 0.23 3.67 6.63 -39.22 -0.26 3.41 16 4 C -0.23 -2.95 9.04 -39.43 -0.36 -3.30 16 5 C -0.03 -0.30 8.70 -39.60 -0.34 -0.64 16 6 C -0.14 -1.79 4.78 -104.60 -0.50 -2.29 16 7 C -0.05 -0.54 3.09 -91.77 -0.28 -0.82 16 8 C -0.14 -1.21 9.01 37.16 0.33 -0.87 16 9 C -0.15 -1.36 9.01 37.15 0.33 -1.03 16 10 C 0.02 0.24 9.17 -39.61 -0.36 -0.12 16 11 C -0.70 -12.22 5.92 -39.43 -0.23 -12.45 16 12 S 2.72 54.09 5.86 -107.50 -0.63 53.46 16 13 O -0.96 -20.68 17.30 -62.47 -1.08 -21.76 16 14 O -0.97 -20.63 16.97 -57.17 -0.97 -21.60 16 15 N -1.04 -21.67 4.23 -125.04 -0.53 -22.20 16 16 C 0.13 2.94 8.31 -8.38 -0.07 2.87 16 17 C 0.04 0.85 3.79 -91.12 -0.35 0.50 16 18 C -0.52 -13.20 8.83 -34.44 -0.30 -13.51 16 19 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -24.36 13.26 55.43 0.74 -23.62 16 22 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.13 2.70 8.29 -8.52 -0.07 2.63 16 27 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 29 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 30 H 0.13 1.34 6.30 -52.49 -0.33 1.01 16 31 H 0.13 1.14 7.09 -52.49 -0.37 0.77 16 32 H 0.08 0.81 7.87 -51.93 -0.41 0.40 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.43 7.38 -51.93 -0.38 0.04 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.48 7.38 -51.93 -0.38 0.09 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.15 2.11 7.22 -52.49 -0.38 1.73 16 40 H 0.07 1.60 8.10 -51.93 -0.42 1.18 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.65 8.11 -51.93 -0.42 1.23 16 43 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.06 1.12 7.13 -51.93 -0.37 0.75 16 45 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -31.89 381.62 -10.32 -42.21 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.77 Total: 0.31 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -1.57 Total: -22.66 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.21 Total: -45.83 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -2.29 Total: -48.44 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 54.09 SS G_CDS: -0.63 Total: 53.46 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.89 -10.32 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191655907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.752 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds