Wall clock time and date at job start Sat Apr 11 2020 05:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35905 * 117.00216 * 2 1 4 4 C 1.38751 * 120.05444 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94645 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05214 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94047 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47238 * 300.00039 * 7 6 5 9 9 C 1.52992 * 109.47161 * 60.00575 * 7 6 5 10 10 C 1.38241 * 120.11181 * 0.25948 * 6 5 4 11 11 C 1.38163 * 120.05609 * 359.44535 * 10 6 5 12 12 S 1.76198 * 120.02954 * 180.25260 * 11 10 6 13 13 O 1.42103 * 106.40451 * 228.86367 * 12 11 10 14 14 O 1.42105 * 106.40206 * 1.78021 * 12 11 10 15 15 N 1.65595 * 107.21923 * 115.32050 * 12 11 10 16 16 C 1.47065 * 136.05916 * 269.62763 * 15 12 11 17 17 C 1.53757 * 87.88931 * 152.96532 * 16 15 12 18 18 C 1.50702 * 114.26736 * 139.79329 * 17 16 15 19 19 H 1.07994 * 119.99868 * 266.47538 * 18 17 16 20 20 C 1.37874 * 119.99694 * 86.47700 * 18 17 16 21 21 N 1.31510 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99699 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47230 * 60.00003 * 22 20 18 24 24 H 1.48506 * 109.47126 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47434 * 300.00278 * 22 20 18 26 26 C 1.47067 * 136.05838 * 90.00231 * 15 12 11 27 27 H 1.08995 * 109.47439 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46792 * 300.00437 * 1 2 3 29 29 H 1.08999 * 109.47054 * 60.00204 * 1 2 3 30 30 H 1.08002 * 120.02981 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.97583 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.46456 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.46832 * 60.00314 * 8 7 6 35 35 H 1.09004 * 109.47261 * 300.00295 * 8 7 6 36 36 H 1.09001 * 109.47066 * 299.99783 * 9 7 6 37 37 H 1.08996 * 109.47747 * 59.99449 * 9 7 6 38 38 H 1.09002 * 109.47103 * 179.97438 * 9 7 6 39 39 H 1.08001 * 119.97236 * 179.72912 * 10 6 5 40 40 H 1.08996 * 113.47032 * 267.69729 * 16 15 12 41 41 H 1.09001 * 113.46838 * 38.13837 * 16 15 12 42 42 H 1.09002 * 114.39680 * 272.68062 * 17 16 15 43 43 H 0.97007 * 119.99806 * 180.02562 * 21 20 18 44 44 H 1.09001 * 113.46357 * 321.86812 * 26 15 12 45 45 H 1.09005 * 113.46877 * 92.24131 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3019 3.6757 0.0005 7 6 3.9861 5.0186 0.0005 8 6 3.5755 5.8002 -1.2490 9 6 3.5746 5.8006 1.2495 10 6 4.0559 2.5171 -0.0049 11 6 3.4311 1.2848 0.0007 12 16 4.3929 -0.1915 0.0006 13 8 3.8564 -1.0198 -1.0219 14 8 5.7537 0.2161 0.0364 15 7 4.0994 -0.9679 1.4335 16 6 4.6906 -0.9647 2.7801 17 6 3.3134 -1.3793 3.3238 18 6 3.3659 -2.4084 4.4235 19 1 3.2815 -3.4583 4.1849 20 6 3.5216 -2.0095 5.7340 21 7 3.6238 -0.7310 6.0245 22 14 3.5859 -3.2851 7.0971 23 1 4.7299 -4.2025 6.8630 24 1 3.7583 -2.6035 8.4052 25 1 2.3213 -4.0635 7.1068 26 6 3.1371 -1.9691 1.9177 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2128 2.3204 -0.0005 31 1 1.3340 4.5114 0.0000 32 1 5.0667 4.8757 0.0015 33 1 4.0707 6.7712 -1.2492 34 1 2.4949 5.9430 -1.2494 35 1 3.8687 5.2430 -2.1388 36 1 2.4940 5.9434 1.2491 37 1 3.8671 5.2438 2.1397 38 1 4.0698 6.7716 1.2497 39 1 5.1344 2.5752 -0.0089 40 1 5.4588 -1.7253 2.9187 41 1 5.0102 0.0233 3.1114 42 1 2.6472 -0.5455 3.5455 43 1 3.7337 -0.4504 6.9466 44 1 2.1332 -1.8368 1.5142 45 1 3.4954 -2.9946 1.8280 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191655907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:47 Heat of formation + Delta-G solvation = -77.945718 kcal Electronic energy + Delta-G solvation = -28379.583122 eV Core-core repulsion = 24489.753476 eV Total energy + Delta-G solvation = -3889.829646 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.42161 -39.89252 -39.29182 -38.20741 -36.97416 -35.80748 -34.55778 -32.47332 -30.52839 -30.04262 -28.13344 -27.96392 -26.58834 -26.36929 -24.81739 -23.58375 -21.82186 -21.36096 -19.74455 -19.45115 -18.72855 -18.21369 -17.83391 -17.48142 -16.84286 -16.65884 -16.40206 -16.11269 -15.70914 -15.58446 -15.19873 -14.71864 -14.61371 -14.52715 -14.42406 -13.78904 -13.55705 -13.47516 -13.34566 -13.25984 -13.22219 -13.17328 -13.07862 -12.99837 -12.79596 -12.73736 -12.34652 -12.23335 -12.14904 -12.07792 -11.81210 -11.70280 -11.45313 -10.97784 -10.95182 -10.50483 -10.45912 -9.82968 -9.31231 -8.11112 -6.21410 -0.67618 -0.21571 0.24816 1.50461 1.51405 1.58657 1.91368 2.15478 2.40984 2.49465 2.71698 3.12163 3.23295 3.62174 3.68550 3.86892 4.00673 4.15262 4.23756 4.30488 4.31387 4.37565 4.42078 4.43188 4.52335 4.64839 4.65254 4.71323 4.77442 4.83037 4.84779 4.87554 5.00239 5.00327 5.05633 5.07050 5.16535 5.18307 5.28816 5.41436 5.50393 5.63994 5.65449 5.87943 5.92586 6.15415 6.33294 6.87669 7.47476 8.98563 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.003839 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.169587 B = 7291.563019 C = 7832.946106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.332 6.332 3 C 0.209 3.791 4 C -0.223 4.223 5 C -0.016 4.016 6 C -0.136 4.136 7 C -0.055 4.055 8 C -0.141 4.141 9 C -0.144 4.144 10 C -0.008 4.008 11 C -0.720 4.720 12 S 2.726 3.274 13 O -0.981 6.981 14 O -0.994 6.994 15 N -1.045 6.045 16 C 0.134 3.866 17 C 0.030 3.970 18 C -0.528 4.528 19 H 0.068 0.932 20 C 0.021 3.979 21 N -0.920 5.920 22 Si 0.956 3.044 23 H -0.271 1.271 24 H -0.289 1.289 25 H -0.268 1.268 26 C 0.139 3.861 27 H 0.119 0.881 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.169 0.831 31 H 0.168 0.832 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.141 0.859 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.263 0.737 44 H 0.075 0.925 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.331 12.476 -11.974 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.245 6.245 3 C 0.160 3.840 4 C -0.242 4.242 5 C -0.034 4.034 6 C -0.137 4.137 7 C -0.073 4.073 8 C -0.198 4.198 9 C -0.201 4.201 10 C -0.027 4.027 11 C -0.810 4.810 12 S 2.823 3.177 13 O -0.972 6.972 14 O -0.985 6.985 15 N -0.885 5.885 16 C 0.008 3.992 17 C 0.009 3.991 18 C -0.566 4.566 19 H 0.086 0.914 20 C -0.179 4.179 21 N -0.559 5.559 22 Si 0.782 3.218 23 H -0.196 1.196 24 H -0.214 1.214 25 H -0.193 1.193 26 C 0.014 3.986 27 H 0.138 0.862 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.186 0.814 31 H 0.186 0.814 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.158 0.842 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.634 12.210 -12.743 18.854 hybrid contribution -0.183 -0.158 1.084 1.111 sum -6.817 12.052 -11.659 18.102 Atomic orbital electron populations 1.23535 0.74971 1.06351 1.03120 1.86141 1.25039 1.26402 1.86877 1.18568 0.90239 0.86201 0.88987 1.21683 1.01824 0.91357 1.09337 1.21466 0.93834 0.98133 0.89977 1.20185 0.94421 0.95172 1.03925 1.20157 0.99648 0.90183 0.97351 1.21859 1.02407 0.99932 0.95596 1.21875 1.02398 1.00008 0.95847 1.20857 1.00526 0.90122 0.91213 1.29940 1.05147 1.19135 1.26781 1.00308 0.72633 0.73464 0.71284 1.93493 1.80827 1.67332 1.55498 1.93471 1.34097 1.84146 1.86834 1.59694 1.47807 1.54872 1.26116 1.22887 0.99895 0.99579 0.76807 1.20352 0.92278 0.95748 0.90753 1.21316 1.50308 0.93471 0.91552 0.91404 1.25758 0.94266 0.96891 1.01014 1.70069 1.49968 1.16125 1.19709 0.85644 0.78995 0.79183 0.78003 1.19622 1.21440 1.19299 1.22696 0.91377 0.90971 0.93537 0.86247 0.90879 0.90083 0.81373 0.81434 0.90571 0.90761 0.91330 0.93177 0.91355 0.94016 0.90641 0.84158 0.91037 0.93525 0.93982 0.92822 0.90667 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -10.41 8.30 -83.25 -0.69 -11.10 16 3 C 0.21 6.59 6.63 22.51 0.15 6.74 16 4 C -0.22 -5.20 9.04 22.36 0.20 -5.00 16 5 C -0.02 -0.34 8.70 22.25 0.19 -0.14 16 6 C -0.14 -3.30 4.78 -19.85 -0.09 -3.39 16 7 C -0.05 -1.01 3.09 -11.54 -0.04 -1.04 16 8 C -0.14 -1.93 9.01 71.98 0.65 -1.29 16 9 C -0.14 -2.34 9.01 71.98 0.65 -1.70 16 10 C -0.01 -0.24 9.17 22.25 0.20 -0.04 16 11 C -0.72 -25.60 5.92 22.36 0.13 -25.47 16 12 S 2.73 112.22 5.86 -56.49 -0.33 111.89 16 13 O -0.98 -43.31 17.30 -122.94 -2.13 -45.44 16 14 O -0.99 -44.11 16.97 -128.00 -2.17 -46.28 16 15 N -1.04 -44.68 4.23 -549.53 -2.32 -47.00 16 16 C 0.13 6.22 8.31 83.26 0.69 6.92 16 17 C 0.03 1.44 3.79 -11.12 -0.04 1.40 16 18 C -0.53 -27.22 8.83 25.60 0.23 -27.00 16 19 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 20 C 0.02 1.09 5.46 84.65 0.46 1.55 16 21 N -0.92 -51.39 13.26 21.45 0.28 -51.11 16 22 Si 0.96 41.41 29.54 68.60 2.03 43.44 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 24 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 C 0.14 5.79 8.29 83.17 0.69 6.48 16 27 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.07 1.25 7.66 -2.38 -0.02 1.23 16 29 H 0.08 1.18 7.66 -2.39 -0.02 1.16 16 30 H 0.17 2.67 6.30 -2.91 -0.02 2.65 16 31 H 0.17 2.11 7.09 -2.91 -0.02 2.09 16 32 H 0.08 1.46 7.87 -2.39 -0.02 1.44 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.77 7.38 -2.39 -0.02 0.75 16 35 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.07 0.93 7.38 -2.39 -0.02 0.91 16 37 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.14 4.33 7.22 -2.91 -0.02 4.31 16 40 H 0.07 3.28 8.10 -2.39 -0.02 3.26 16 41 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.04 2.21 8.11 -2.39 -0.02 2.19 16 43 H 0.26 14.02 8.31 -92.70 -0.77 13.25 16 44 H 0.07 2.86 7.13 -2.39 -0.02 2.85 16 45 H 0.08 3.10 8.10 -2.38 -0.02 3.08 16 Total: -1.00 -70.05 381.62 0.84 -69.21 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.99 Total: 16.99 kcal Atomic # 6 Polarization: -45.78 SS G_CDS: 5.19 Total: -40.60 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -2.04 Total: -98.11 kcal Atomic # 8 Polarization: -97.83 SS G_CDS: -4.99 Total: -102.82 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: 112.22 SS G_CDS: -0.33 Total: 111.89 kcal Total: -70.05 0.84 -69.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191655907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.733 kcal (2) G-P(sol) polarization free energy of solvation -70.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds