Wall clock time and date at job start Sat Apr 11 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47379 * 2 1 4 4 C 1.52994 * 109.47229 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47096 * 179.97438 * 4 3 2 6 6 C 1.36873 * 120.00047 * 270.00610 * 5 4 3 7 7 H 1.07998 * 120.00336 * 24.01088 * 6 5 4 8 8 C 1.39053 * 119.99792 * 204.01121 * 6 5 4 9 9 N 1.31364 * 120.00003 * 15.56771 * 8 6 5 10 10 Si 1.86800 * 119.99891 * 195.56701 * 8 6 5 11 11 H 1.48496 * 109.47409 * 5.00702 * 10 8 6 12 12 H 1.48498 * 109.47045 * 125.00944 * 10 8 6 13 13 H 1.48506 * 109.46930 * 245.00599 * 10 8 6 14 14 C 1.34776 * 120.00040 * 90.00427 * 5 4 3 15 15 O 1.21592 * 120.00121 * 233.27420 * 14 5 4 16 16 C 1.47730 * 119.99797 * 53.26745 * 14 5 4 17 17 C 1.39667 * 120.14964 * 34.20009 * 16 14 5 18 18 C 1.37914 * 119.84785 * 180.02562 * 17 16 14 19 19 S 1.76195 * 119.92495 * 179.97438 * 18 17 16 20 20 C 1.81399 * 104.44933 * 265.10904 * 19 18 17 21 21 O 1.42102 * 104.27951 * 21.18099 * 19 18 17 22 22 O 1.42105 * 104.27700 * 149.04029 * 19 18 17 23 23 C 1.38399 * 120.14848 * 359.97438 * 18 17 16 24 24 C 1.38357 * 120.30795 * 0.25995 * 23 18 17 25 25 C 1.37954 * 120.14808 * 359.48369 * 24 23 18 26 26 C 1.50705 * 120.07775 * 180.25463 * 25 24 23 27 27 H 1.08999 * 109.47276 * 59.99983 * 1 2 3 28 28 H 1.09000 * 109.47245 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47445 * 299.99953 * 1 2 3 30 30 H 1.09002 * 109.47445 * 240.00047 * 2 1 3 31 31 H 1.09009 * 109.47123 * 119.99955 * 2 1 3 32 32 H 1.09007 * 109.46491 * 59.99987 * 3 2 1 33 33 H 1.08999 * 109.46931 * 300.00228 * 3 2 1 34 34 H 1.09006 * 109.46839 * 59.99985 * 4 3 2 35 35 H 1.08999 * 109.47647 * 300.00154 * 4 3 2 36 36 H 0.97001 * 119.99676 * 184.96633 * 9 8 6 37 37 H 1.08001 * 120.07390 * 0.03730 * 17 16 14 38 38 H 1.09003 * 109.46903 * 64.92879 * 20 19 18 39 39 H 1.09000 * 109.47287 * 184.93152 * 20 19 18 40 40 H 1.09000 * 109.47295 * 304.93177 * 20 19 18 41 41 H 1.08001 * 119.84798 * 179.97438 * 23 18 17 42 42 H 1.08000 * 119.92349 * 179.74026 * 24 23 18 43 43 H 1.08999 * 109.46804 * 263.08014 * 26 25 24 44 44 H 1.08998 * 109.46901 * 23.07695 * 26 25 24 45 45 H 1.08999 * 109.46921 * 143.07888 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2868 3.4682 -1.1856 7 1 3.7717 3.1516 -2.0805 8 6 5.1823 4.5307 -1.2380 9 7 6.0285 4.7257 -0.2523 10 14 5.1819 5.6808 -2.7099 11 1 4.0629 5.3224 -3.6179 12 1 5.0126 7.0807 -2.2442 13 1 6.4701 5.5537 -3.4378 14 6 4.2825 3.4597 1.1669 15 8 3.7699 4.5419 1.3778 16 6 5.1511 2.8419 2.1898 17 6 6.2506 2.0718 1.8042 18 6 7.0570 1.4974 2.7644 19 16 8.4442 0.5250 2.2802 20 6 7.8267 -1.1806 2.2894 21 8 8.7221 0.9475 0.9522 22 8 9.3893 0.7187 3.3235 23 6 6.7791 1.6832 4.1074 24 6 5.6887 2.4409 4.4964 25 6 4.8768 3.0255 3.5465 26 6 3.6929 3.8552 3.9721 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 1.6766 1.9563 0.8901 33 1 1.6767 1.9563 -0.8900 34 1 3.9336 0.9284 -0.8892 35 1 3.9330 0.9287 0.8908 36 1 6.6034 5.5070 -0.2541 37 1 6.4689 1.9265 0.7565 38 1 7.0597 -1.2934 1.5232 39 1 8.6491 -1.8659 2.0840 40 1 7.4002 -1.4074 3.2665 41 1 7.4135 1.2309 4.8552 42 1 5.4751 2.5784 5.5461 43 1 2.7917 3.2427 3.9455 44 1 3.8525 4.2228 4.9858 45 1 3.5784 4.7000 3.2930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194273045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:55 Heat of formation + Delta-G solvation = -72.283945 kcal Electronic energy + Delta-G solvation = -28665.957490 eV Core-core repulsion = 24776.373357 eV Total energy + Delta-G solvation = -3889.584133 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -39.56583 -37.67225 -36.87157 -35.72082 -35.54274 -33.85309 -32.38273 -31.76426 -30.60757 -29.52026 -28.25739 -27.01362 -24.99640 -23.49854 -22.49212 -21.47374 -20.74138 -19.92917 -18.55732 -17.67311 -16.46317 -16.05117 -15.95680 -15.41108 -15.09028 -14.99347 -14.73168 -14.66774 -14.00485 -13.83218 -13.59139 -13.42707 -13.28010 -13.19298 -13.17885 -12.57428 -12.36799 -12.00090 -11.93772 -11.84038 -11.79397 -11.69800 -11.49839 -11.27977 -11.23049 -11.10241 -10.93993 -10.88201 -10.85273 -10.69637 -10.54313 -10.28532 -10.18941 -10.10344 -8.99399 -8.70045 -8.40738 -8.33367 -7.39648 -6.22930 -3.68703 0.23522 1.17105 1.63626 3.06827 3.25780 3.36399 3.39439 3.50405 4.04884 4.22960 4.27095 4.37473 4.74737 4.77535 4.94313 5.10471 5.18411 5.21858 5.30132 5.34541 5.40221 5.41611 5.57993 5.68922 5.70500 5.79731 5.98987 6.01903 6.02629 6.08789 6.10758 6.14483 6.19096 6.29154 6.35805 6.42540 6.47660 6.62807 6.64496 6.68566 6.86354 7.03116 7.27912 7.53814 8.08358 8.95310 9.21095 9.50082 9.97921 10.89902 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008445 B = 0.005179 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3314.845020 B = 5405.376095 C = 6391.455157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.135 4.135 4 C 0.122 3.878 5 N -0.517 5.517 6 C -0.302 4.302 7 H 0.084 0.916 8 C 0.036 3.964 9 N -0.867 5.867 10 Si 0.918 3.082 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.284 1.284 14 C 0.596 3.404 15 O -0.526 6.526 16 C -0.114 4.114 17 C 0.039 3.961 18 C -0.681 4.681 19 S 2.498 3.502 20 C -0.653 4.653 21 O -0.929 6.929 22 O -0.947 6.947 23 C -0.025 4.025 24 C -0.158 4.158 25 C 0.000 4.000 26 C -0.141 4.141 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.271 0.729 37 H 0.152 0.848 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 -13.195 7.208 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.174 4.174 4 C -0.003 4.003 5 N -0.242 5.242 6 C -0.428 4.428 7 H 0.102 0.898 8 C -0.169 4.169 9 N -0.505 5.505 10 Si 0.745 3.255 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.210 1.210 14 C 0.387 3.613 15 O -0.404 6.404 16 C -0.119 4.119 17 C 0.020 3.980 18 C -0.769 4.769 19 S 2.679 3.321 20 C -0.803 4.803 21 O -0.926 6.926 22 O -0.944 6.944 23 C -0.044 4.044 24 C -0.177 4.177 25 C -0.001 4.001 26 C -0.197 4.197 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.170 0.830 38 H 0.152 0.848 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.618 -12.224 7.111 14.234 hybrid contribution -0.584 0.498 -0.390 0.860 sum -2.202 -11.726 6.721 13.694 Atomic orbital electron populations 1.21755 0.96348 1.00848 1.01776 1.21478 0.95445 0.97500 1.01528 1.22073 0.97381 0.95447 1.02467 1.21274 0.92780 0.85546 1.00716 1.42681 1.67116 1.10017 1.04411 1.19198 1.21085 1.16200 0.86355 0.89820 1.25133 0.93671 0.99650 0.98430 1.69467 1.20370 1.27044 1.33650 0.86035 0.77793 0.80551 0.81117 1.19688 1.20949 1.20987 1.17175 0.79811 0.84155 0.80189 1.90411 1.48322 1.24469 1.77160 1.20615 0.98533 0.98902 0.93829 1.21179 0.89436 0.87909 0.99497 1.30246 1.23114 1.22103 1.01399 1.05111 0.75057 0.77188 0.74790 1.30264 1.13704 1.24381 1.11917 1.93631 1.82914 1.79431 1.36659 1.93550 1.58130 1.84912 1.57809 1.20791 0.94958 0.95092 0.93561 1.20980 0.96601 1.01000 0.99087 1.20395 0.94975 0.92323 0.92454 1.21261 0.94605 1.01567 1.02256 0.92827 0.93302 0.92991 0.92119 0.92485 0.92610 0.91531 0.91645 0.93387 0.91815 0.83021 0.84845 0.85439 0.85248 0.84982 0.85589 0.91344 0.92214 0.87015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.15 0.37 -1.32 16 2 C -0.12 -1.53 5.93 -26.73 -0.16 -1.69 16 3 C -0.13 -2.21 5.54 -26.73 -0.15 -2.36 16 4 C 0.12 2.27 5.37 -4.05 -0.02 2.25 16 5 N -0.52 -12.35 2.26 -115.93 -0.26 -12.61 16 6 C -0.30 -7.91 9.50 -15.00 -0.14 -8.05 16 7 H 0.08 2.10 7.88 -52.49 -0.41 1.69 16 8 C 0.04 0.99 4.98 -17.45 -0.09 0.90 16 9 N -0.87 -24.81 11.40 55.50 0.63 -24.18 16 10 Si 0.92 21.63 29.58 -169.99 -5.03 16.60 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.60 14.77 3.88 -12.38 -0.05 14.72 16 15 O -0.53 -14.56 14.05 5.28 0.07 -14.49 16 16 C -0.11 -2.46 5.05 -104.97 -0.53 -2.99 16 17 C 0.04 0.80 8.41 -39.17 -0.33 0.47 16 18 C -0.68 -11.28 5.65 -39.64 -0.22 -11.51 16 19 S 2.50 35.12 5.79 -107.50 -0.62 34.50 16 20 C -0.65 -5.47 10.80 101.05 1.09 -4.38 16 21 O -0.93 -17.16 16.99 -57.54 -0.98 -18.14 16 22 O -0.95 -15.22 17.26 -57.54 -0.99 -16.22 16 23 C -0.02 -0.37 9.47 -39.48 -0.37 -0.74 16 24 C -0.16 -2.43 9.66 -39.64 -0.38 -2.81 16 25 C 0.00 0.00 5.91 -104.20 -0.62 -0.62 16 26 C -0.14 -2.40 9.39 36.01 0.34 -2.06 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.16 8.04 -51.93 -0.42 0.74 16 35 H 0.05 0.81 6.99 -51.93 -0.36 0.45 16 36 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.15 3.37 7.35 -52.49 -0.39 2.98 16 38 H 0.13 1.00 8.14 -51.92 -0.42 0.58 16 39 H 0.13 0.81 8.14 -51.92 -0.42 0.38 16 40 H 0.13 0.81 8.14 -51.92 -0.42 0.39 16 41 H 0.13 1.55 7.69 -52.49 -0.40 1.14 16 42 H 0.13 1.52 8.05 -52.49 -0.42 1.10 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 0.83 8.04 -51.93 -0.42 0.42 16 45 H 0.11 2.31 5.39 -51.93 -0.28 2.03 16 LS Contribution 385.38 15.07 5.81 5.81 Total: -1.00 -35.80 385.38 -9.52 -45.32 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.89 Total: 3.58 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -1.26 Total: -20.18 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.37 Total: -36.79 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -1.90 Total: -48.84 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Atomic # 16 Polarization: 35.12 SS G_CDS: -0.62 Total: 34.50 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.80 -9.52 -45.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194273045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.964 kcal (2) G-P(sol) polarization free energy of solvation -35.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds