Wall clock time and date at job start Sat Apr 11 2020 05:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47358 * 2 1 4 4 C 1.52992 * 109.47550 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47369 * 180.02562 * 4 3 2 6 6 C 1.36877 * 119.99817 * 269.99732 * 5 4 3 7 7 H 1.08001 * 119.99828 * 18.44709 * 6 5 4 8 8 C 1.39048 * 119.99866 * 198.44187 * 6 5 4 9 9 N 1.31361 * 120.00085 * 13.40877 * 8 6 5 10 10 Si 1.86800 * 119.99857 * 193.41214 * 8 6 5 11 11 H 1.48498 * 109.47297 * 64.99882 * 10 8 6 12 12 H 1.48503 * 109.47190 * 185.00235 * 10 8 6 13 13 H 1.48497 * 109.46922 * 304.99723 * 10 8 6 14 14 C 1.34771 * 119.99917 * 90.00169 * 5 4 3 15 15 O 1.21595 * 120.00029 * 242.77854 * 14 5 4 16 16 C 1.47725 * 120.00443 * 63.06036 * 14 5 4 17 17 C 1.39659 * 120.15027 * 25.12196 * 16 14 5 18 18 C 1.37923 * 119.84875 * 180.02562 * 17 16 14 19 19 C 1.38397 * 120.14859 * 359.97438 * 18 17 16 20 20 C 1.38359 * 120.30370 * 0.02562 * 19 18 17 21 21 S 1.76204 * 119.91914 * 179.97438 * 20 19 18 22 22 C 1.81396 * 104.44834 * 111.26512 * 21 20 19 23 23 O 1.42097 * 104.27645 * 227.33418 * 21 20 19 24 24 O 1.42094 * 104.28091 * 355.19283 * 21 20 19 25 25 C 1.37952 * 120.15575 * 359.71851 * 20 19 18 26 26 C 1.50695 * 120.08268 * 180.27824 * 25 20 19 27 27 H 1.08993 * 109.46766 * 60.00282 * 1 2 3 28 28 H 1.08998 * 109.46765 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47198 * 300.00284 * 1 2 3 30 30 H 1.08996 * 109.47548 * 240.00111 * 2 1 3 31 31 H 1.09003 * 109.47478 * 119.99488 * 2 1 3 32 32 H 1.09006 * 109.47175 * 59.99369 * 3 2 1 33 33 H 1.09005 * 109.46914 * 300.00034 * 3 2 1 34 34 H 1.09004 * 109.47638 * 59.99967 * 4 3 2 35 35 H 1.09005 * 109.47150 * 300.00024 * 4 3 2 36 36 H 0.97005 * 120.00014 * 184.98604 * 9 8 6 37 37 H 1.08001 * 120.07990 * 0.02794 * 17 16 14 38 38 H 1.07996 * 119.92369 * 179.97438 * 18 17 16 39 39 H 1.07994 * 119.84573 * 180.02562 * 19 18 17 40 40 H 1.09002 * 109.47497 * 65.73423 * 22 21 20 41 41 H 1.08997 * 109.47429 * 185.73244 * 22 21 20 42 42 H 1.08998 * 109.47335 * 305.73327 * 22 21 20 43 43 H 1.08998 * 109.46899 * 263.41445 * 26 25 20 44 44 H 1.09002 * 109.47122 * 23.41218 * 26 25 20 45 45 H 1.09004 * 109.47565 * 143.41093 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2870 3.4693 -1.1839 7 1 3.8422 3.0983 -2.0954 8 6 5.0918 4.6028 -1.2141 9 7 5.8402 4.9048 -0.1776 10 14 5.1088 5.6961 -2.7286 11 1 3.7712 6.3161 -2.9066 12 1 6.1295 6.7613 -2.5589 13 1 5.4392 4.8800 -3.9245 14 6 4.2825 3.4587 1.1687 15 8 3.6399 4.4507 1.4545 16 6 5.3132 2.9533 2.0985 17 6 6.3841 2.1982 1.6154 18 6 7.3426 1.7289 2.4891 19 6 7.2451 2.0052 3.8417 20 6 6.1868 2.7527 4.3271 21 16 6.0723 3.0978 6.0512 22 6 6.3730 4.8823 6.1765 23 8 4.7235 2.7952 6.3803 24 8 7.1480 2.3693 6.6267 25 6 5.2239 3.2327 3.4637 26 6 4.0752 4.0519 3.9933 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 0.9286 -0.8891 35 1 3.9330 0.9288 0.8909 36 1 6.3459 5.7326 -0.1692 37 1 6.4617 1.9822 0.5600 38 1 8.1710 1.1446 2.1169 39 1 7.9986 1.6357 4.5214 40 1 5.5614 5.4227 5.6891 41 1 6.4215 5.1698 7.2267 42 1 7.3166 5.1269 5.6889 43 1 3.2096 3.4075 4.1465 44 1 4.3609 4.5080 4.9412 45 1 3.8244 4.8328 3.2754 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194417505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:02 Heat of formation + Delta-G solvation = -63.307892 kcal Electronic energy + Delta-G solvation = -28640.107400 eV Core-core repulsion = 24750.912498 eV Total energy + Delta-G solvation = -3889.194902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -39.59924 -37.70351 -37.02969 -35.80485 -35.55841 -33.91230 -32.40005 -31.73605 -30.76814 -29.48636 -28.23802 -26.77416 -24.97108 -23.52268 -22.70424 -21.47095 -20.69432 -19.68294 -18.78064 -17.65993 -16.41201 -16.15586 -15.97442 -15.48455 -15.27498 -15.04193 -14.82428 -14.65195 -14.02108 -13.87711 -13.68906 -13.53274 -13.35613 -13.08164 -12.82921 -12.54155 -12.31172 -12.01496 -11.96697 -11.85237 -11.77284 -11.64159 -11.49451 -11.39364 -11.31350 -11.06970 -10.91676 -10.87979 -10.84831 -10.68598 -10.56939 -10.24864 -10.23039 -10.07849 -9.09659 -8.81730 -8.39685 -8.22255 -7.47129 -6.27205 -3.69342 0.20886 1.27221 1.56769 3.01551 3.20491 3.29382 3.30905 3.49415 3.92940 4.17713 4.28141 4.40996 4.75059 4.76300 4.94993 5.13593 5.15772 5.26758 5.27723 5.35731 5.41334 5.45759 5.64387 5.72393 5.74619 5.82779 5.97174 6.04590 6.08859 6.12898 6.16423 6.16673 6.22787 6.31851 6.36460 6.43937 6.50573 6.68087 6.72071 6.84968 6.92113 7.01409 7.30517 7.46307 8.01112 8.91378 9.18560 9.44474 9.90390 10.86173 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.004582 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.134797 B = 6108.916968 C = 7579.126903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.136 4.136 4 C 0.133 3.867 5 N -0.548 5.548 6 C -0.286 4.286 7 H 0.084 0.916 8 C 0.023 3.977 9 N -0.885 5.885 10 Si 0.920 3.080 11 H -0.279 1.279 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.625 3.375 15 O -0.516 6.516 16 C -0.111 4.111 17 C 0.002 3.998 18 C -0.164 4.164 19 C -0.021 4.021 20 C -0.678 4.678 21 S 2.503 3.497 22 C -0.658 4.658 23 O -0.938 6.938 24 O -0.951 6.951 25 C 0.046 3.954 26 C -0.159 4.159 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.270 0.730 37 H 0.138 0.862 38 H 0.126 0.874 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.128 0.872 42 H 0.133 0.867 43 H 0.087 0.913 44 H 0.048 0.952 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.818 -5.046 7.141 8.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.175 4.175 4 C 0.008 3.992 5 N -0.276 5.276 6 C -0.412 4.412 7 H 0.102 0.898 8 C -0.179 4.179 9 N -0.526 5.526 10 Si 0.748 3.252 11 H -0.205 1.205 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.416 3.584 15 O -0.392 6.392 16 C -0.116 4.116 17 C -0.017 4.017 18 C -0.183 4.183 19 C -0.040 4.040 20 C -0.766 4.766 21 S 2.685 3.315 22 C -0.807 4.807 23 O -0.935 6.935 24 O -0.948 6.948 25 C 0.044 3.956 26 C -0.214 4.214 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.156 0.844 38 H 0.144 0.856 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.105 0.895 44 H 0.067 0.933 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.486 -4.953 7.967 9.394 hybrid contribution 0.527 1.193 -1.620 2.080 sum 1.013 -3.760 6.347 7.446 Atomic orbital electron populations 1.21754 0.96360 1.00840 1.01767 1.21476 0.95463 0.97518 1.01513 1.22098 0.97524 0.95415 1.02494 1.21115 0.92687 0.84862 1.00547 1.42500 1.70372 1.10596 1.04132 1.19213 1.25591 1.10904 0.85535 0.89790 1.25040 0.94746 0.99558 0.98519 1.69282 1.27984 1.24011 1.31368 0.86094 0.77760 0.79997 0.81347 1.20475 1.21304 1.20345 1.17151 0.80007 0.81634 0.79577 1.90363 1.46952 1.28313 1.73551 1.20598 0.98921 0.99186 0.92944 1.21663 0.90703 0.89016 1.00288 1.21169 1.00425 1.03435 0.93285 1.20881 0.94405 0.92631 0.96085 1.29965 1.06034 1.16825 1.23785 1.04890 0.74642 0.77496 0.74522 1.30369 1.13113 1.25942 1.11326 1.93592 1.34600 1.82479 1.82811 1.93519 1.56318 1.68681 1.76266 1.19670 0.92489 0.90916 0.92497 1.21691 0.96523 1.02043 1.01171 0.92889 0.93314 0.92921 0.92239 0.92406 0.92485 0.91637 0.91948 0.93405 0.91861 0.84447 0.85576 0.84495 0.84392 0.85341 0.84861 0.89469 0.93299 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.12 -1.63 5.93 -26.73 -0.16 -1.79 16 3 C -0.14 -2.32 5.54 -26.74 -0.15 -2.47 16 4 C 0.13 2.49 5.39 -4.04 -0.02 2.47 16 5 N -0.55 -12.79 2.02 -115.93 -0.23 -13.02 16 6 C -0.29 -7.20 9.64 -15.00 -0.14 -7.35 16 7 H 0.08 2.03 7.87 -52.49 -0.41 1.62 16 8 C 0.02 0.61 5.16 -17.45 -0.09 0.52 16 9 N -0.88 -23.71 10.92 55.50 0.61 -23.10 16 10 Si 0.92 20.70 29.58 -169.99 -5.03 15.67 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 14 C 0.62 15.13 3.65 -12.39 -0.05 15.09 16 15 O -0.52 -13.76 13.97 5.28 0.07 -13.69 16 16 C -0.11 -2.38 5.13 -104.97 -0.54 -2.92 16 17 C 0.00 0.04 9.25 -39.17 -0.36 -0.32 16 18 C -0.16 -2.67 10.03 -39.64 -0.40 -3.06 16 19 C -0.02 -0.33 9.50 -39.48 -0.37 -0.70 16 20 C -0.68 -11.23 5.59 -39.64 -0.22 -11.46 16 21 S 2.50 34.59 5.14 -107.50 -0.55 34.04 16 22 C -0.66 -6.57 10.47 101.05 1.06 -5.52 16 23 O -0.94 -15.39 16.01 -57.54 -0.92 -16.32 16 24 O -0.95 -14.69 16.74 -57.54 -0.96 -15.66 16 25 C 0.05 0.89 5.89 -104.21 -0.61 0.28 16 26 C -0.16 -2.87 8.11 36.00 0.29 -2.57 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.10 8.04 -51.93 -0.42 0.68 16 35 H 0.05 0.85 7.50 -51.93 -0.39 0.46 16 36 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.14 2.78 7.79 -52.49 -0.41 2.37 16 38 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.14 1.84 7.21 -52.49 -0.38 1.46 16 40 H 0.14 1.37 6.06 -51.92 -0.31 1.05 16 41 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.13 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 44 H 0.05 0.71 3.58 -51.93 -0.19 0.52 16 45 H 0.12 2.54 5.28 -51.93 -0.27 2.27 16 LS Contribution 376.00 15.07 5.67 5.67 Total: -1.00 -32.67 376.00 -9.32 -41.99 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.57 Total: 5.66 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -1.40 Total: -21.25 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.37 Total: -36.12 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -1.81 Total: -45.66 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Atomic # 16 Polarization: 34.59 SS G_CDS: -0.55 Total: 34.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.67 -9.32 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194417505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.315 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds