Wall clock time and date at job start Sat Apr 11 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35898 * 116.99942 * 2 1 4 4 C 1.38752 * 120.05540 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94131 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.97191 * 179.97438 * 5 4 3 7 7 C 1.38284 * 120.05539 * 0.02562 * 5 4 3 8 8 C 1.38247 * 120.11452 * 359.97438 * 7 5 4 9 9 C 1.38158 * 120.05237 * 0.02562 * 8 7 5 10 10 S 1.76206 * 120.02604 * 179.97438 * 9 8 7 11 11 O 1.42101 * 106.40430 * 228.54308 * 10 9 8 12 12 O 1.42096 * 106.40080 * 1.46353 * 10 9 8 13 13 N 1.65605 * 107.21541 * 115.00225 * 10 9 8 14 14 C 1.46919 * 120.62914 * 269.72123 * 13 10 9 15 15 C 1.52768 * 109.00976 * 233.58515 * 14 13 10 16 16 C 1.53043 * 109.37833 * 305.59032 * 15 14 13 17 17 C 1.50712 * 109.44576 * 181.25112 * 16 15 14 18 18 H 1.07994 * 119.99461 * 245.39052 * 17 16 15 19 19 C 1.37874 * 119.99937 * 65.38871 * 17 16 15 20 20 N 1.31518 * 120.00033 * 9.57561 * 19 17 16 21 21 Si 1.86795 * 120.00088 * 189.57628 * 19 17 16 22 22 H 1.48504 * 109.46941 * 94.99153 * 21 19 17 23 23 H 1.48496 * 109.47256 * 214.99120 * 21 19 17 24 24 H 1.48499 * 109.47036 * 334.99304 * 21 19 17 25 25 C 1.53035 * 109.54131 * 61.24145 * 16 15 14 26 26 C 1.46929 * 120.62937 * 90.00205 * 13 10 9 27 27 H 1.09003 * 109.46787 * 299.99804 * 1 2 3 28 28 H 1.08997 * 109.47451 * 59.99850 * 1 2 3 29 29 H 1.09003 * 109.47002 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.02922 * 0.25342 * 4 3 2 31 31 H 1.08999 * 109.47345 * 89.99778 * 6 5 4 32 32 H 1.08997 * 109.47467 * 210.00389 * 6 5 4 33 33 H 1.09004 * 109.47084 * 329.99994 * 6 5 4 34 34 H 1.08004 * 119.94276 * 179.97438 * 7 5 4 35 35 H 1.08001 * 119.97357 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.58777 * 353.41871 * 14 13 10 37 37 H 1.08997 * 109.58707 * 113.84821 * 14 13 10 38 38 H 1.08997 * 109.56858 * 185.55378 * 15 14 13 39 39 H 1.08997 * 109.35799 * 65.49918 * 15 14 13 40 40 H 1.08997 * 109.46206 * 301.21095 * 16 15 14 41 41 H 0.97002 * 120.00034 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.49913 * 178.68049 * 25 16 15 43 43 H 1.09001 * 109.52787 * 58.59278 * 25 16 15 44 44 H 1.08995 * 109.58404 * 246.15500 * 26 13 10 45 45 H 1.09001 * 109.58769 * 6.43638 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 1.1020 4.8698 0.0011 7 6 3.3019 3.6757 0.0005 8 6 4.0560 2.5170 0.0000 9 6 3.4311 1.2848 -0.0005 10 16 4.3929 -0.1916 -0.0019 11 8 3.8554 -1.0198 -1.0238 12 8 5.7537 0.2161 0.0326 13 7 4.1009 -0.9681 1.4313 14 6 4.9329 -0.6986 2.6118 15 6 5.4750 -2.0212 3.1511 16 6 4.3103 -2.9802 3.4081 17 6 4.8407 -4.2746 3.9691 18 1 4.7482 -5.1877 3.4000 19 6 5.4439 -4.2928 5.2088 20 7 5.3911 -3.2299 5.9815 21 14 6.3362 -5.8272 5.7908 22 1 7.7834 -5.7056 5.4810 23 1 6.1549 -5.9791 7.2568 24 1 5.7797 -7.0165 5.0973 25 6 3.5757 -3.2570 2.0945 26 6 3.0086 -1.9443 1.5448 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.2128 2.3203 0.0051 31 1 0.9042 5.1746 1.0287 32 1 1.6518 5.6585 -0.5124 33 1 0.1576 4.6913 -0.5132 34 1 3.7923 4.6380 0.0005 35 1 5.1344 2.5751 0.0000 36 1 5.7643 -0.0512 2.3328 37 1 4.3310 -0.2132 3.3800 38 1 6.0119 -1.8429 4.0827 39 1 6.1524 -2.4596 2.4184 40 1 3.6205 -2.5306 4.1223 41 1 5.8151 -3.2428 6.8538 42 1 2.7608 -3.9583 2.2741 43 1 4.2706 -3.6841 1.3714 44 1 2.2466 -1.5625 2.2242 45 1 2.5690 -2.1166 0.5624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259201088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:48 Heat of formation + Delta-G solvation = -92.789947 kcal Electronic energy + Delta-G solvation = -28640.314845 eV Core-core repulsion = 24749.841505 eV Total energy + Delta-G solvation = -3890.473340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.47934 -37.99792 -37.60636 -36.81050 -35.46786 -33.31276 -33.16510 -30.79761 -30.42939 -30.06464 -28.29957 -26.98353 -25.65357 -22.65319 -22.43130 -22.22061 -22.10370 -19.46252 -18.94169 -17.83713 -17.37177 -16.85782 -16.53134 -16.18941 -15.95798 -15.25888 -14.66973 -14.58931 -14.48011 -14.23623 -14.06073 -13.86132 -13.40695 -13.03644 -12.77150 -12.70500 -12.69495 -12.57728 -12.46700 -12.00872 -11.88352 -11.79359 -11.71703 -11.65447 -11.29811 -11.22237 -10.90470 -10.81305 -10.59411 -10.56676 -10.27197 -10.07265 -9.53612 -9.35112 -9.01892 -8.93092 -8.60545 -8.27697 -8.21967 -5.98706 -3.99456 0.57496 0.85220 1.16222 2.92248 3.14339 3.33709 3.41088 3.44302 3.47460 4.06760 4.36075 4.38709 4.48050 4.64668 4.81027 4.86290 4.93228 5.07913 5.18120 5.22427 5.29834 5.33307 5.34767 5.35722 5.38893 5.66091 5.80642 5.91713 5.92726 6.03004 6.16201 6.18812 6.25120 6.41195 6.45887 6.53266 6.56584 6.81260 6.97563 7.02015 7.16997 7.27956 7.45492 7.76351 8.00416 8.05029 8.48935 9.04469 9.63797 11.10083 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.003314 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.820803 B = 8447.469233 C = 8623.669769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.304 6.304 3 C 0.231 3.769 4 C -0.232 4.232 5 C 0.000 4.000 6 C -0.122 4.122 7 C -0.182 4.182 8 C 0.017 3.983 9 C -0.713 4.713 10 S 2.695 3.305 11 O -0.954 6.954 12 O -0.965 6.965 13 N -0.983 5.983 14 C 0.118 3.882 15 C -0.114 4.114 16 C 0.049 3.951 17 C -0.513 4.513 18 H 0.055 0.945 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.886 3.114 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.275 1.275 25 C -0.121 4.121 26 C 0.127 3.873 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.132 0.868 35 H 0.149 0.851 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.043 0.957 40 H 0.034 0.966 41 H 0.259 0.741 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.845 15.783 -11.330 22.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.182 3.818 4 C -0.252 4.252 5 C 0.000 4.000 6 C -0.179 4.179 7 C -0.201 4.201 8 C -0.002 4.002 9 C -0.798 4.798 10 S 2.785 3.215 11 O -0.944 6.944 12 O -0.956 6.956 13 N -0.823 5.823 14 C -0.007 4.007 15 C -0.154 4.154 16 C 0.030 3.970 17 C -0.551 4.551 18 H 0.073 0.927 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.714 3.286 22 H -0.207 1.207 23 H -0.215 1.215 24 H -0.200 1.200 25 C -0.160 4.160 26 C 0.002 3.998 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.127 0.873 30 H 0.153 0.847 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.166 0.834 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.205 15.395 -11.820 21.929 hybrid contribution -0.240 -0.063 0.778 0.816 sum -10.445 15.333 -11.042 21.590 Atomic orbital electron populations 1.23194 0.77196 1.04980 1.01506 1.86201 1.22569 1.25920 1.86861 1.18311 0.90478 0.84886 0.88101 1.21149 1.00165 0.91763 1.12089 1.19977 0.94177 0.94679 0.91197 1.20933 0.99512 0.94381 1.03046 1.21051 0.93216 0.98717 1.07075 1.20845 1.00642 0.90021 0.88734 1.30509 1.04374 1.20720 1.24221 1.01841 0.73335 0.73135 0.73223 1.93550 1.80348 1.65473 1.55031 1.93529 1.31817 1.83585 1.86652 1.57462 1.43865 1.53170 1.27852 1.21597 0.92973 1.00218 0.85876 1.21817 1.00220 0.92969 1.00379 1.18618 0.92836 0.94735 0.90816 1.21206 1.37780 0.94216 1.01932 0.92690 1.24952 0.96415 0.96032 0.96417 1.69958 1.43952 1.29103 1.09774 0.86683 0.80415 0.83811 0.77701 1.20746 1.21451 1.19962 1.21980 0.99935 0.94288 0.99802 1.21523 0.87616 0.89294 1.01319 0.92130 0.92284 0.87256 0.84729 0.90220 0.90804 0.91118 0.85049 0.83374 0.90661 0.92231 0.89715 0.93836 0.94778 0.93115 0.92147 0.92881 0.92480 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.30 -4.03 7.40 -29.09 -0.22 -4.25 16 3 C 0.23 3.15 6.63 -39.22 -0.26 2.89 16 4 C -0.23 -2.52 8.69 -39.43 -0.34 -2.86 16 5 C 0.00 0.00 5.88 -104.65 -0.62 -0.61 16 6 C -0.12 -0.77 10.01 36.00 0.36 -0.41 16 7 C -0.18 -1.93 9.70 -39.56 -0.38 -2.31 16 8 C 0.02 0.22 9.55 -39.61 -0.38 -0.16 16 9 C -0.71 -10.69 5.92 -39.44 -0.23 -10.93 16 10 S 2.70 47.92 5.31 -107.50 -0.57 47.34 16 11 O -0.95 -18.81 15.89 -62.47 -0.99 -19.81 16 12 O -0.97 -18.62 15.55 -57.17 -0.89 -19.51 16 13 N -0.98 -18.03 3.30 -113.77 -0.37 -18.40 16 14 C 0.12 2.27 6.45 -3.93 -0.03 2.24 16 15 C -0.11 -2.63 5.19 -26.83 -0.14 -2.77 16 16 C 0.05 1.18 1.93 -91.73 -0.18 1.00 16 17 C -0.51 -13.94 8.48 -34.44 -0.29 -14.23 16 18 H 0.05 1.49 7.77 -52.49 -0.41 1.08 16 19 C 0.06 1.73 5.19 -17.82 -0.09 1.64 16 20 N -0.89 -25.08 12.16 55.43 0.67 -24.40 16 21 Si 0.89 21.27 29.55 -169.99 -5.02 16.25 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 25 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 26 C 0.13 2.28 5.38 -3.71 -0.02 2.26 16 27 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 28 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 29 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.13 1.08 6.30 -52.49 -0.33 0.75 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 34 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 35 H 0.15 1.76 7.33 -52.49 -0.38 1.38 16 36 H 0.08 1.35 6.91 -51.93 -0.36 1.00 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.08 2.13 6.87 -51.93 -0.36 1.77 16 39 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.08 1.40 6.18 -51.93 -0.32 1.08 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -33.22 368.89 -10.31 -43.54 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.73 Total: -0.63 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -1.75 Total: -25.69 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.30 Total: -42.80 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -2.10 Total: -43.56 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 47.92 SS G_CDS: -0.57 Total: 47.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.22 -10.31 -43.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259201088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.252 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds