Wall clock time and date at job start Sat Apr 11 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.46502 * 120.00345 * 275.00289 * 5 4 3 7 7 C 1.50697 * 109.47079 * 85.00200 * 6 5 4 8 8 H 1.08000 * 119.99936 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99754 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99674 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00100 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46920 * 90.00615 * 11 9 7 13 13 H 1.48502 * 109.46849 * 210.00337 * 11 9 7 14 14 H 1.48493 * 109.47130 * 330.00506 * 11 9 7 15 15 S 1.65605 * 119.99782 * 95.00317 * 5 4 3 16 16 O 1.42099 * 106.40321 * 203.53813 * 15 5 4 17 17 O 1.42097 * 106.40157 * 336.45932 * 15 5 4 18 18 C 1.76206 * 107.21866 * 89.99987 * 15 5 4 19 19 C 1.38286 * 120.11240 * 269.72225 * 18 15 5 20 20 C 1.37937 * 120.34593 * 179.97438 * 19 18 15 21 21 C 1.39285 * 120.24007 * 0.55249 * 20 19 18 22 22 C 1.38878 * 118.87346 * 359.40810 * 21 20 19 23 23 C 1.37740 * 120.79014 * 0.42094 * 22 21 20 24 24 C 1.51650 * 107.03655 * 180.68231 * 22 21 20 25 25 C 1.54711 * 101.91915 * 15.47654 * 24 22 21 26 26 O 1.36132 * 129.87941 * 179.09917 * 21 20 19 27 27 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 28 28 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 30 30 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 31 31 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 32 32 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 33 33 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 34 34 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 35 35 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 36 36 H 1.08998 * 109.47222 * 205.00373 * 6 5 4 37 37 H 1.09000 * 109.46517 * 324.99960 * 6 5 4 38 38 H 0.97002 * 120.00059 * 179.97438 * 10 9 7 39 39 H 1.07999 * 119.82795 * 0.17805 * 19 18 15 40 40 H 1.07995 * 119.87396 * 180.27992 * 20 19 18 41 41 H 1.07998 * 120.00955 * 179.76078 * 23 22 21 42 42 H 1.08997 * 110.94170 * 133.63117 * 24 22 21 43 43 H 1.09000 * 110.94108 * 257.28671 * 24 22 21 44 44 H 1.08994 * 110.75102 * 93.01428 * 25 24 22 45 45 H 1.09006 * 110.75069 * 216.18648 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.1975 3.5521 -1.2635 7 6 2.8751 4.1724 -1.6342 8 1 2.0167 4.0373 -0.9929 9 6 2.7610 4.9116 -2.7924 10 7 1.6068 5.4526 -3.1161 11 14 4.2457 5.1447 -3.9018 12 1 4.2937 4.0476 -4.9015 13 1 4.1394 6.4492 -4.6034 14 1 5.4840 5.1225 -3.0827 15 16 4.4527 3.5618 1.4290 16 8 4.3461 4.9604 1.2011 17 8 3.7279 2.8825 2.4450 18 6 6.1577 3.2356 1.7313 19 6 6.5329 2.1157 2.4506 20 6 7.8662 1.8554 2.6896 21 6 8.8463 2.7253 2.2178 22 6 8.4571 3.8461 1.4960 23 6 7.1253 4.1022 1.2553 24 6 9.7227 4.5844 1.1051 25 6 10.8092 3.5125 1.3585 26 8 10.1999 2.6705 2.3520 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9337 0.9285 0.8891 35 1 3.9329 0.9289 -0.8909 36 1 4.9473 4.3351 -1.1508 37 1 4.5079 2.8621 -2.0482 38 1 1.5265 5.9729 -3.9308 39 1 5.7781 1.4396 2.8244 40 1 8.1508 0.9761 3.2484 41 1 6.8365 4.9797 0.6958 42 1 9.6971 4.8722 0.0542 43 1 9.8780 5.4554 1.7419 44 1 11.0153 2.9491 0.4486 45 1 11.7210 3.9701 1.7426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259353725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:04 Heat of formation + Delta-G solvation = -84.377583 kcal Electronic energy + Delta-G solvation = -28132.282540 eV Core-core repulsion = 24242.173988 eV Total energy + Delta-G solvation = -3890.108552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34941 -37.65814 -36.82053 -36.55108 -35.22100 -33.89050 -32.97056 -32.31771 -30.48424 -29.49090 -29.01400 -26.97234 -24.01293 -23.08716 -22.78172 -22.04044 -21.81278 -20.62898 -18.52847 -17.71066 -17.28465 -17.04922 -16.82183 -16.52319 -16.32794 -15.46576 -14.76108 -14.36270 -14.35276 -14.22396 -13.66481 -13.54416 -13.48489 -13.30217 -13.08017 -12.99078 -12.71756 -12.57401 -12.10562 -12.08750 -12.00358 -11.86925 -11.49876 -11.37784 -11.28781 -11.16137 -11.11572 -10.94254 -10.65416 -10.64762 -10.51746 -10.33147 -10.17444 -9.97029 -9.40644 -9.13380 -8.64551 -8.58629 -8.12443 -6.07610 -4.06132 0.67992 0.99931 1.12602 2.88235 3.21705 3.24567 3.31779 3.33308 3.69687 4.09836 4.25890 4.31930 4.37822 4.60054 4.67042 4.80156 4.96841 5.07079 5.15942 5.20644 5.30201 5.34577 5.39033 5.44463 5.48845 5.50860 5.56383 5.71567 5.84701 5.95015 6.00964 6.06454 6.08593 6.12727 6.22503 6.29221 6.30836 6.40225 6.54654 6.69309 6.79264 6.85659 7.01805 7.14957 7.37725 7.57752 8.49428 8.98555 9.51533 11.05566 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010131 B = 0.004586 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.190436 B = 6103.767347 C = 7908.421118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.145 4.145 4 C 0.137 3.863 5 N -0.977 5.977 6 C 0.225 3.775 7 C -0.527 4.527 8 H 0.084 0.916 9 C 0.074 3.926 10 N -0.894 5.894 11 Si 0.868 3.132 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.265 1.265 15 S 2.689 3.311 16 O -0.940 6.940 17 O -0.968 6.968 18 C -0.702 4.702 19 C 0.013 3.987 20 C -0.161 4.161 21 C 0.151 3.849 22 C -0.199 4.199 23 C 0.032 3.968 24 C -0.111 4.111 25 C 0.050 3.950 26 O -0.303 6.303 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.264 0.736 39 H 0.148 0.852 40 H 0.136 0.864 41 H 0.144 0.856 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.682 -8.634 7.777 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.184 4.184 4 C 0.011 3.989 5 N -0.816 5.816 6 C 0.102 3.898 7 C -0.566 4.566 8 H 0.102 0.898 9 C -0.128 4.128 10 N -0.532 5.532 11 Si 0.695 3.305 12 H -0.201 1.201 13 H -0.209 1.209 14 H -0.190 1.190 15 S 2.777 3.223 16 O -0.931 6.931 17 O -0.958 6.958 18 C -0.786 4.786 19 C -0.006 4.006 20 C -0.180 4.180 21 C 0.105 3.895 22 C -0.200 4.200 23 C 0.013 3.987 24 C -0.148 4.148 25 C -0.024 4.024 26 O -0.216 6.216 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.166 0.834 40 H 0.154 0.846 41 H 0.162 0.838 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.099 0.901 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 14.253 -8.156 8.305 18.402 hybrid contribution 1.487 0.105 -1.001 1.795 sum 15.739 -8.050 7.304 19.128 Atomic orbital electron populations 1.21749 0.96154 1.00710 1.02221 1.21452 0.95851 0.97311 1.01155 1.22165 0.95399 0.96223 1.04608 1.21119 0.94800 0.81523 1.01422 1.57257 1.78020 1.23336 1.22974 1.19504 0.98477 0.91174 0.80618 1.21398 0.95685 1.31651 1.07866 0.89827 1.24844 0.95536 0.95008 0.97435 1.69887 1.23922 1.34393 1.25026 0.86981 0.84057 0.78074 0.81382 1.20130 1.20943 1.18988 1.02174 0.73333 0.73936 0.72866 1.93603 1.85400 1.29212 1.84844 1.93520 1.69422 1.75865 1.56987 1.31491 1.27027 1.05821 1.14273 1.20677 0.95488 0.93574 0.90905 1.20338 0.90768 1.00372 1.06514 1.19822 0.83729 0.93089 0.92909 1.20824 0.95319 0.97714 1.06171 1.20104 0.89974 0.96469 0.92168 1.21823 0.90418 0.98570 1.03954 1.23908 0.96711 0.90364 0.91456 1.86835 1.15428 1.66468 1.52869 0.92420 0.93478 0.92848 0.92319 0.92618 0.91737 0.88896 0.91746 0.90922 0.94914 0.95201 0.92576 0.83426 0.84619 0.83802 0.88482 0.88806 0.90141 0.87285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.66 5.93 -26.73 -0.16 -1.82 16 3 C -0.14 -2.53 5.13 -26.73 -0.14 -2.66 16 4 C 0.14 2.26 5.37 -4.04 -0.02 2.24 16 5 N -0.98 -19.03 2.80 -115.66 -0.32 -19.36 16 6 C 0.23 5.07 4.19 -5.19 -0.02 5.04 16 7 C -0.53 -14.29 8.97 -34.44 -0.31 -14.59 16 8 H 0.08 2.47 7.13 -52.49 -0.37 2.10 16 9 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 10 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 11 Si 0.87 20.48 27.47 -169.99 -4.67 15.81 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 15 S 2.69 51.82 5.60 -107.50 -0.60 51.22 16 16 O -0.94 -21.54 16.27 -57.17 -0.93 -22.47 16 17 O -0.97 -19.15 16.25 -57.17 -0.93 -20.08 16 18 C -0.70 -11.18 5.98 -39.53 -0.24 -11.41 16 19 C 0.01 0.17 9.50 -39.67 -0.38 -0.20 16 20 C -0.16 -1.99 10.06 -39.30 -0.40 -2.39 16 21 C 0.15 1.96 7.04 -38.96 -0.27 1.69 16 22 C -0.20 -2.62 6.27 -104.10 -0.65 -3.28 16 23 C 0.03 0.49 9.51 -39.72 -0.38 0.11 16 24 C -0.11 -1.03 7.12 -26.51 -0.19 -1.22 16 25 C 0.05 0.41 8.01 38.06 0.30 0.71 16 26 O -0.30 -3.52 11.10 -20.16 -0.22 -3.75 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.09 1.89 6.59 -51.93 -0.34 1.55 16 34 H 0.06 0.89 7.61 -51.93 -0.40 0.50 16 35 H 0.07 1.08 8.00 -51.93 -0.42 0.66 16 36 H 0.03 0.74 6.67 -51.93 -0.35 0.39 16 37 H 0.03 0.63 7.43 -51.93 -0.39 0.25 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.15 1.72 7.61 -52.49 -0.40 1.32 16 40 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.14 2.18 7.63 -52.49 -0.40 1.78 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 379.13 15.07 5.71 5.71 Total: -1.00 -33.74 379.13 -10.64 -44.38 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.88 Total: 1.96 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: -2.57 Total: -27.46 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.45 Total: -45.32 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -2.08 Total: -46.30 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Atomic # 16 Polarization: 51.82 SS G_CDS: -0.60 Total: 51.22 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.74 -10.64 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259353725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.999 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds