Wall clock time and date at job start Sat Apr 11 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.46502 * 120.00345 * 275.00289 * 5 4 3 7 7 C 1.50697 * 109.47079 * 85.00200 * 6 5 4 8 8 H 1.08000 * 119.99936 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99754 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99674 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00100 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46920 * 90.00615 * 11 9 7 13 13 H 1.48502 * 109.46849 * 210.00337 * 11 9 7 14 14 H 1.48493 * 109.47130 * 330.00506 * 11 9 7 15 15 S 1.65605 * 119.99782 * 95.00317 * 5 4 3 16 16 O 1.42099 * 106.40321 * 203.53813 * 15 5 4 17 17 O 1.42097 * 106.40157 * 336.45932 * 15 5 4 18 18 C 1.76206 * 107.21866 * 89.99987 * 15 5 4 19 19 C 1.38286 * 120.11240 * 269.72225 * 18 15 5 20 20 C 1.37937 * 120.34593 * 179.97438 * 19 18 15 21 21 C 1.39285 * 120.24007 * 0.55249 * 20 19 18 22 22 C 1.38878 * 118.87346 * 359.40810 * 21 20 19 23 23 C 1.37740 * 120.79014 * 0.42094 * 22 21 20 24 24 C 1.51650 * 107.03655 * 180.68231 * 22 21 20 25 25 C 1.54711 * 101.91915 * 15.47654 * 24 22 21 26 26 O 1.36132 * 129.87941 * 179.09917 * 21 20 19 27 27 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 28 28 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 30 30 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 31 31 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 32 32 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 33 33 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 34 34 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 35 35 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 36 36 H 1.08998 * 109.47222 * 205.00373 * 6 5 4 37 37 H 1.09000 * 109.46517 * 324.99960 * 6 5 4 38 38 H 0.97002 * 120.00059 * 179.97438 * 10 9 7 39 39 H 1.07999 * 119.82795 * 0.17805 * 19 18 15 40 40 H 1.07995 * 119.87396 * 180.27992 * 20 19 18 41 41 H 1.07998 * 120.00955 * 179.76078 * 23 22 21 42 42 H 1.08997 * 110.94170 * 133.63117 * 24 22 21 43 43 H 1.09000 * 110.94108 * 257.28671 * 24 22 21 44 44 H 1.08994 * 110.75102 * 93.01428 * 25 24 22 45 45 H 1.09006 * 110.75069 * 216.18648 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.1975 3.5521 -1.2635 7 6 2.8751 4.1724 -1.6342 8 1 2.0167 4.0373 -0.9929 9 6 2.7610 4.9116 -2.7924 10 7 1.6068 5.4526 -3.1161 11 14 4.2457 5.1447 -3.9018 12 1 4.2937 4.0476 -4.9015 13 1 4.1394 6.4492 -4.6034 14 1 5.4840 5.1225 -3.0827 15 16 4.4527 3.5618 1.4290 16 8 4.3461 4.9604 1.2011 17 8 3.7279 2.8825 2.4450 18 6 6.1577 3.2356 1.7313 19 6 6.5329 2.1157 2.4506 20 6 7.8662 1.8554 2.6896 21 6 8.8463 2.7253 2.2178 22 6 8.4571 3.8461 1.4960 23 6 7.1253 4.1022 1.2553 24 6 9.7227 4.5844 1.1051 25 6 10.8092 3.5125 1.3585 26 8 10.1999 2.6705 2.3520 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9337 0.9285 0.8891 35 1 3.9329 0.9289 -0.8909 36 1 4.9473 4.3351 -1.1508 37 1 4.5079 2.8621 -2.0482 38 1 1.5265 5.9729 -3.9308 39 1 5.7781 1.4396 2.8244 40 1 8.1508 0.9761 3.2484 41 1 6.8365 4.9797 0.6958 42 1 9.6971 4.8722 0.0542 43 1 9.8780 5.4554 1.7419 44 1 11.0153 2.9491 0.4486 45 1 11.7210 3.9701 1.7426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259353725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:03 Heat of formation + Delta-G solvation = -107.243290 kcal Electronic energy + Delta-G solvation = -28133.274072 eV Core-core repulsion = 24242.173988 eV Total energy + Delta-G solvation = -3891.100084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.22918 -38.64169 -38.36208 -38.10811 -36.84026 -35.36102 -34.27629 -33.82550 -31.52210 -30.62892 -30.33157 -28.63806 -24.90894 -24.57319 -23.82964 -23.48309 -22.95342 -21.91702 -19.93619 -19.00755 -18.64238 -18.59551 -18.14671 -17.80464 -17.20230 -16.96797 -16.18078 -16.04282 -15.48326 -15.30208 -15.07050 -14.84961 -14.53877 -14.38712 -14.28507 -14.13241 -14.07884 -13.78897 -13.71193 -13.48022 -13.40230 -13.12321 -12.99508 -12.77907 -12.77193 -12.56347 -12.17976 -12.15124 -12.06641 -11.94204 -11.90743 -11.84926 -11.72501 -11.53134 -11.20981 -10.71442 -10.14545 -9.78122 -9.55954 -8.22398 -6.26175 -0.61550 -0.27778 0.11455 1.37251 1.41190 1.49955 1.97302 2.09326 2.38661 2.42800 2.86311 3.10471 3.16368 3.44785 3.56671 3.74293 3.91404 4.05963 4.08123 4.10543 4.12426 4.27292 4.35324 4.39329 4.54354 4.63577 4.70500 4.73877 4.74660 4.80111 4.81580 4.90500 4.93506 4.97183 5.03481 5.09121 5.10147 5.14218 5.30145 5.33218 5.37685 5.52489 5.54368 5.66111 5.84009 5.94268 6.37364 6.77581 7.35338 8.94657 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010131 B = 0.004586 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.190436 B = 6103.767347 C = 7908.421118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.144 4.144 4 C 0.128 3.872 5 N -0.984 5.984 6 C 0.231 3.769 7 C -0.529 4.529 8 H 0.038 0.962 9 C 0.008 3.992 10 N -0.949 5.949 11 Si 0.935 3.065 12 H -0.257 1.257 13 H -0.287 1.287 14 H -0.240 1.240 15 S 2.692 3.308 16 O -0.991 6.991 17 O -0.982 6.982 18 C -0.706 4.706 19 C 0.010 3.990 20 C -0.157 4.157 21 C 0.151 3.849 22 C -0.205 4.205 23 C 0.011 3.989 24 C -0.113 4.113 25 C 0.048 3.952 26 O -0.309 6.309 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.035 0.965 37 H 0.055 0.945 38 H 0.265 0.735 39 H 0.165 0.835 40 H 0.167 0.833 41 H 0.134 0.866 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.949 -10.974 7.938 23.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.183 4.183 4 C 0.003 3.997 5 N -0.821 5.821 6 C 0.107 3.893 7 C -0.569 4.569 8 H 0.056 0.944 9 C -0.189 4.189 10 N -0.590 5.590 11 Si 0.758 3.242 12 H -0.181 1.181 13 H -0.213 1.213 14 H -0.163 1.163 15 S 2.786 3.214 16 O -0.982 6.982 17 O -0.973 6.973 18 C -0.796 4.796 19 C -0.009 4.009 20 C -0.176 4.176 21 C 0.104 3.896 22 C -0.207 4.207 23 C -0.009 4.009 24 C -0.150 4.150 25 C -0.026 4.026 26 O -0.222 6.222 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.183 0.817 40 H 0.184 0.816 41 H 0.152 0.848 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 18.475 -10.514 8.474 22.884 hybrid contribution 0.208 0.811 -0.916 1.241 sum 18.684 -9.703 7.558 22.369 Atomic orbital electron populations 1.21772 0.96169 1.02072 1.01010 1.21439 0.95884 0.94780 1.03031 1.22101 0.96708 0.98198 1.01310 1.21445 0.93753 0.80412 1.04078 1.57161 1.78945 1.24247 1.21758 1.19295 0.95630 0.91850 0.82544 1.21688 0.96577 1.31553 1.07049 0.94410 1.25838 0.98931 0.94709 0.99412 1.70071 1.26808 1.36068 1.26014 0.85897 0.80582 0.78257 0.79469 1.18112 1.21283 1.16272 1.01563 0.74551 0.72754 0.72502 1.93534 1.86892 1.32304 1.85427 1.93484 1.70974 1.75654 1.57153 1.30735 1.23971 1.07921 1.16965 1.20915 0.96776 0.92896 0.90308 1.20647 0.89954 1.01121 1.05889 1.20074 0.84647 0.92804 0.92034 1.21162 0.95473 0.98441 1.05593 1.20123 0.91110 0.96449 0.93170 1.21997 0.88796 0.99108 1.05050 1.24251 0.96970 0.89693 0.91646 1.86839 1.14481 1.67053 1.53831 0.94221 0.90730 0.93601 0.90665 0.90300 0.94307 0.93001 0.88554 0.88595 0.94694 0.92732 0.92608 0.81707 0.81568 0.84790 0.87162 0.87697 0.88622 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.91 71.98 0.71 -3.38 16 2 C -0.11 -3.03 5.93 30.59 0.18 -2.85 16 3 C -0.14 -5.20 5.13 30.59 0.16 -5.04 16 4 C 0.13 4.11 5.37 86.38 0.46 4.57 16 5 N -0.98 -38.73 2.80 -519.85 -1.45 -40.19 16 6 C 0.23 10.45 4.19 85.63 0.36 10.81 16 7 C -0.53 -30.08 8.97 25.60 0.23 -29.85 16 8 H 0.04 2.42 7.13 -2.91 -0.02 2.40 16 9 C 0.01 0.49 5.47 84.65 0.46 0.95 16 10 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 11 Si 0.94 42.25 27.47 68.60 1.88 44.13 16 12 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 13 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 14 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 15 S 2.69 106.44 5.60 -56.49 -0.32 106.12 16 16 O -0.99 -47.90 16.27 -128.00 -2.08 -49.98 16 17 O -0.98 -39.70 16.25 -128.00 -2.08 -41.78 16 18 C -0.71 -21.93 5.98 22.31 0.13 -21.80 16 19 C 0.01 0.25 9.50 22.21 0.21 0.47 16 20 C -0.16 -3.36 10.06 22.45 0.23 -3.13 16 21 C 0.15 3.44 7.04 22.68 0.16 3.60 16 22 C -0.20 -4.93 6.27 -19.53 -0.12 -5.05 16 23 C 0.01 0.33 9.51 22.18 0.21 0.54 16 24 C -0.11 -1.73 7.12 30.73 0.22 -1.52 16 25 C 0.05 0.57 8.01 72.57 0.58 1.15 16 26 O -0.31 -5.96 11.10 -95.05 -1.06 -7.01 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 2.27 6.59 -2.39 -0.02 2.26 16 34 H 0.10 2.48 7.61 -2.39 -0.02 2.46 16 35 H 0.10 2.64 8.00 -2.39 -0.02 2.62 16 36 H 0.04 1.58 6.67 -2.39 -0.02 1.56 16 37 H 0.05 2.21 7.43 -2.39 -0.02 2.19 16 38 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 39 H 0.17 3.42 7.61 -2.91 -0.02 3.40 16 40 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 41 H 0.13 4.13 7.63 -2.91 -0.02 4.10 16 42 H 0.11 1.41 8.14 -2.39 -0.02 1.40 16 43 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.14 0.80 8.14 -2.38 -0.02 0.78 16 Total: -1.00 -78.74 379.13 0.30 -78.44 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.92 Total: 20.18 kcal Atomic # 6 Polarization: -54.72 SS G_CDS: 4.19 Total: -50.53 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -1.16 Total: -99.57 kcal Atomic # 8 Polarization: -93.55 SS G_CDS: -5.22 Total: -98.77 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.88 Total: 44.13 kcal Atomic # 16 Polarization: 106.44 SS G_CDS: -0.32 Total: 106.12 kcal Total: -78.74 0.30 -78.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259353725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.806 kcal (2) G-P(sol) polarization free energy of solvation -78.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds