Wall clock time and date at job start Sat Apr 11 2020 05:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35899 * 117.00445 * 2 1 4 4 C 1.38752 * 120.05511 * 0.20755 * 3 2 1 5 5 C 1.38123 * 119.94428 * 180.27962 * 4 3 2 6 6 C 1.38283 * 120.05480 * 359.76620 * 5 4 3 7 7 C 1.50701 * 119.94709 * 179.97438 * 6 5 4 8 8 C 1.38247 * 120.11430 * 359.97438 * 6 5 4 9 9 C 1.38166 * 120.05502 * 0.02562 * 8 6 5 10 10 S 1.76193 * 120.03047 * 179.97438 * 9 8 6 11 11 O 1.42105 * 106.40403 * 228.54095 * 10 9 8 12 12 O 1.42098 * 106.40145 * 1.46024 * 10 9 8 13 13 N 1.65606 * 107.21910 * 115.00206 * 10 9 8 14 14 C 1.46500 * 120.00055 * 64.99793 * 13 10 9 15 15 H 1.08997 * 109.41188 * 25.14187 * 14 13 10 16 16 C 1.52958 * 109.41180 * 145.00164 * 14 13 10 17 17 C 1.53229 * 109.40527 * 183.70416 * 16 14 13 18 18 C 1.51267 * 108.53414 * 305.37342 * 17 16 14 19 19 C 1.37880 * 120.84998 * 231.36499 * 18 17 16 20 20 N 1.31514 * 119.99671 * 0.02562 * 19 18 17 21 21 Si 1.86802 * 120.00066 * 180.02562 * 19 18 17 22 22 H 1.48499 * 109.47010 * 60.00146 * 21 19 18 23 23 H 1.48497 * 109.46987 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47056 * 300.00426 * 21 19 18 25 25 C 1.51267 * 118.30222 * 51.34714 * 18 17 16 26 26 C 1.52957 * 109.40989 * 265.35596 * 14 13 10 27 27 H 1.08998 * 109.47241 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46503 * 300.00697 * 1 2 3 29 29 H 1.08998 * 109.46697 * 60.00046 * 1 2 3 30 30 H 1.08001 * 120.02883 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.97060 * 179.74407 * 5 4 3 32 32 H 1.09001 * 109.47226 * 270.02278 * 7 6 5 33 33 H 1.09002 * 109.46752 * 30.02397 * 7 6 5 34 34 H 1.09001 * 109.47253 * 150.01767 * 7 6 5 35 35 H 1.08000 * 119.97860 * 179.97438 * 8 6 5 36 36 H 0.97002 * 119.99610 * 244.99753 * 13 10 9 37 37 H 1.09004 * 109.48239 * 303.68558 * 16 14 13 38 38 H 1.09007 * 109.48279 * 63.70799 * 16 14 13 39 39 H 1.08995 * 109.62518 * 65.08631 * 17 16 14 40 40 H 1.08998 * 109.62516 * 185.66131 * 17 16 14 41 41 H 0.97003 * 119.99603 * 180.02562 * 20 19 18 42 42 H 1.09008 * 109.62576 * 68.36271 * 25 18 17 43 43 H 1.08996 * 109.62910 * 188.93503 * 25 18 17 44 44 H 1.09002 * 109.48242 * 296.27087 * 26 14 13 45 45 H 1.08990 * 109.48276 * 56.32103 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3753 0.0044 5 6 1.9211 3.6047 -0.0015 6 6 3.3021 3.6756 -0.0068 7 6 3.9864 5.0183 -0.0138 8 6 4.0562 2.5169 -0.0057 9 6 3.4313 1.2847 0.0001 10 16 4.3929 -0.1917 0.0008 11 8 3.8520 -1.0235 -1.0165 12 8 5.7539 0.2160 0.0293 13 7 4.1056 -0.9633 1.4377 14 6 2.7683 -1.4817 1.7361 15 1 2.2406 -1.6810 0.8035 16 6 2.8930 -2.7789 2.5370 17 6 1.4985 -3.3698 2.7695 18 6 0.6321 -2.3153 3.4218 19 6 -0.0750 -2.5937 4.5723 20 7 -0.0009 -3.7886 5.1167 21 14 -1.1383 -1.2738 5.3576 22 1 -2.1799 -0.8383 4.3929 23 1 -1.7895 -1.8219 6.5744 24 1 -0.2913 -0.1121 5.7294 25 6 0.5617 -0.9473 2.7800 26 6 1.9902 -0.4442 2.5471 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5140 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 0.2130 2.3204 0.0082 31 1 1.3343 4.5113 -0.0023 32 1 4.1473 5.3388 -1.0431 33 1 3.3605 5.7477 0.5003 34 1 4.9464 4.9395 0.4965 35 1 5.1346 2.5749 -0.0103 36 1 4.8228 -1.0719 2.0817 37 1 3.5021 -3.4920 1.9814 38 1 3.3641 -2.5693 3.4975 39 1 1.0616 -3.6635 1.8151 40 1 1.5733 -4.2383 3.4238 41 1 -0.4987 -3.9846 5.9258 42 1 0.0380 -1.0168 1.8265 43 1 0.0345 -0.2594 3.4410 44 1 2.4823 -0.2899 3.5075 45 1 1.9592 0.4971 1.9987 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260300211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:08 Heat of formation + Delta-G solvation = -91.489096 kcal Electronic energy + Delta-G solvation = -29659.452293 eV Core-core repulsion = 25769.035362 eV Total energy + Delta-G solvation = -3890.416931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.48765 -38.12842 -37.14869 -36.77070 -35.52698 -33.68200 -32.31568 -31.42196 -31.26874 -29.71666 -27.97254 -26.82846 -26.05511 -23.42620 -22.09346 -21.66567 -21.45227 -19.64980 -19.08449 -18.41785 -17.45168 -16.62734 -16.40596 -16.29057 -15.86192 -15.33812 -14.67340 -14.54931 -14.45025 -14.27480 -13.93962 -13.85595 -13.31733 -12.70478 -12.47972 -12.40136 -12.38942 -12.36822 -12.33018 -12.20523 -11.82003 -11.73063 -11.64750 -11.54138 -11.39986 -11.04856 -10.99727 -10.84496 -10.54007 -10.48816 -10.19941 -10.01188 -9.70126 -9.48369 -9.12337 -8.91593 -8.52880 -8.46780 -8.22137 -6.14174 -4.04309 0.65211 0.89544 1.25365 3.16973 3.21388 3.23231 3.29205 3.30506 3.50975 3.98020 4.32737 4.46525 4.61363 4.84335 4.87770 5.09588 5.11872 5.17880 5.27143 5.34243 5.41715 5.46957 5.58151 5.69771 5.74209 5.76561 5.85670 5.92033 6.02836 6.09929 6.24091 6.31129 6.49529 6.58081 6.59504 6.73910 6.84885 6.94852 7.03786 7.16511 7.21986 7.32671 7.47152 7.62414 7.74160 7.82365 8.35121 8.93337 9.50285 10.95595 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013814 B = 0.004927 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.414080 B = 5681.228227 C = 6757.474860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.295 6.295 3 C 0.233 3.767 4 C -0.226 4.226 5 C -0.028 4.028 6 C -0.154 4.154 7 C -0.107 4.107 8 C 0.013 3.987 9 C -0.706 4.706 10 S 2.700 3.300 11 O -0.951 6.951 12 O -0.978 6.978 13 N -1.109 6.109 14 C 0.159 3.841 15 H 0.098 0.902 16 C -0.111 4.111 17 C 0.012 3.988 18 C -0.487 4.487 19 C 0.077 3.923 20 N -0.888 5.888 21 Si 0.888 3.112 22 H -0.276 1.276 23 H -0.292 1.292 24 H -0.276 1.276 25 C -0.018 4.018 26 C -0.121 4.121 27 H 0.116 0.884 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.137 0.863 31 H 0.129 0.871 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.145 0.855 36 H 0.412 0.588 37 H 0.038 0.962 38 H 0.053 0.947 39 H 0.007 0.993 40 H 0.060 0.940 41 H 0.265 0.735 42 H 0.030 0.970 43 H 0.021 0.979 44 H 0.051 0.949 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.587 14.038 -9.136 17.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.206 6.206 3 C 0.184 3.816 4 C -0.245 4.245 5 C -0.046 4.046 6 C -0.155 4.155 7 C -0.164 4.164 8 C -0.007 4.007 9 C -0.793 4.793 10 S 2.789 3.211 11 O -0.941 6.941 12 O -0.968 6.968 13 N -0.869 5.869 14 C 0.054 3.946 15 H 0.116 0.884 16 C -0.151 4.151 17 C -0.026 4.026 18 C -0.506 4.506 19 C -0.126 4.126 20 N -0.526 5.526 21 Si 0.717 3.283 22 H -0.202 1.202 23 H -0.219 1.219 24 H -0.202 1.202 25 C -0.056 4.056 26 C -0.161 4.161 27 H 0.134 0.866 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.155 0.845 31 H 0.147 0.853 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.163 0.837 36 H 0.246 0.754 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.026 0.974 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.040 0.960 44 H 0.070 0.930 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.982 13.456 -9.791 17.111 hybrid contribution -1.106 1.447 1.300 2.237 sum 2.876 14.902 -8.492 17.391 Atomic orbital electron populations 1.23401 0.76988 1.05547 1.01155 1.86351 1.22948 1.25123 1.86222 1.18285 0.90519 0.85502 0.87279 1.21339 1.00581 0.92200 1.10397 1.21074 0.94011 0.97194 0.92356 1.19864 0.93772 0.95637 1.06192 1.20708 1.00459 0.93022 1.02232 1.20652 1.00186 0.89657 0.90163 1.30252 1.04330 1.20005 1.24683 1.01594 0.72630 0.73350 0.73529 1.93588 1.80057 1.64981 1.55491 1.93528 1.32745 1.83588 1.86962 1.55633 1.20239 1.72818 1.38214 1.21047 0.78969 0.94618 0.99916 0.88397 1.21924 1.00986 0.94219 0.97967 1.19365 0.89660 0.97199 0.96394 1.20010 1.26783 0.95156 1.08660 1.24825 0.96172 0.95298 0.96267 1.69818 1.41644 1.20398 1.20722 0.86711 0.80797 0.82092 0.78725 1.20154 1.21883 1.20152 1.19891 0.92027 0.96206 0.97467 1.22162 0.99169 0.96027 0.98704 0.86564 0.91285 0.92899 0.84485 0.85330 0.91386 0.91629 0.91374 0.83726 0.75399 0.94322 0.92793 0.97423 0.92184 0.92527 0.95146 0.96015 0.92976 0.94722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 7.52 101.05 0.76 1.05 16 2 O -0.29 -4.65 4.38 -29.45 -0.13 -4.78 16 3 C 0.23 3.49 4.31 -39.22 -0.17 3.32 16 4 C -0.23 -2.81 9.04 -39.43 -0.36 -3.17 16 5 C -0.03 -0.31 9.69 -39.61 -0.38 -0.69 16 6 C -0.15 -1.74 5.88 -104.60 -0.62 -2.36 16 7 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 8 C 0.01 0.17 9.20 -39.60 -0.36 -0.20 16 9 C -0.71 -10.81 5.65 -39.43 -0.22 -11.03 16 10 S 2.70 45.15 5.45 -107.50 -0.59 44.57 16 11 O -0.95 -18.56 16.62 -62.57 -1.04 -19.60 16 12 O -0.98 -17.08 16.97 -57.17 -0.97 -18.05 16 13 N -1.11 -18.22 5.47 -4.93 -0.03 -18.25 16 14 C 0.16 3.00 1.93 -67.97 -0.13 2.87 16 15 H 0.10 1.92 5.41 -51.93 -0.28 1.64 16 16 C -0.11 -2.28 5.46 -26.63 -0.15 -2.42 16 17 C 0.01 0.28 5.97 -27.49 -0.16 0.12 16 18 C -0.49 -12.02 5.51 -98.92 -0.55 -12.57 16 19 C 0.08 2.02 5.46 -17.82 -0.10 1.92 16 20 N -0.89 -24.68 12.73 55.43 0.71 -23.97 16 21 Si 0.89 20.37 26.80 -169.99 -4.56 15.81 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 C -0.02 -0.38 4.88 -27.48 -0.13 -0.51 16 26 C -0.12 -2.32 4.54 -26.63 -0.12 -2.44 16 27 H 0.12 1.47 7.48 -51.93 -0.39 1.08 16 28 H 0.07 0.85 6.55 -51.93 -0.34 0.51 16 29 H 0.05 0.53 7.67 -51.93 -0.40 0.13 16 30 H 0.14 1.40 6.30 -52.49 -0.33 1.07 16 31 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 35 H 0.15 1.73 7.33 -52.49 -0.38 1.34 16 36 H 0.41 5.89 8.83 -34.47 -0.30 5.59 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.06 1.57 7.07 -51.93 -0.37 1.20 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.03 0.58 4.03 -51.92 -0.21 0.37 16 43 H 0.02 0.46 5.17 -51.93 -0.27 0.19 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.03 0.60 4.40 -51.93 -0.23 0.37 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -31.56 348.28 -9.70 -41.26 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.01 Total: 4.39 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -2.33 Total: -26.63 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.68 Total: -42.22 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -2.14 Total: -42.43 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.56 Total: 15.81 kcal Atomic # 16 Polarization: 45.15 SS G_CDS: -0.59 Total: 44.57 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.56 -9.70 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260300211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.232 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds