Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35899 * 117.00445 * 2 1 4 4 C 1.38752 * 120.05511 * 0.20755 * 3 2 1 5 5 C 1.38123 * 119.94428 * 180.27962 * 4 3 2 6 6 C 1.38283 * 120.05480 * 359.76620 * 5 4 3 7 7 C 1.50701 * 119.94709 * 179.97438 * 6 5 4 8 8 C 1.38247 * 120.11430 * 359.97438 * 6 5 4 9 9 C 1.38166 * 120.05502 * 0.02562 * 8 6 5 10 10 S 1.76193 * 120.03047 * 179.97438 * 9 8 6 11 11 O 1.42105 * 106.40403 * 228.54095 * 10 9 8 12 12 O 1.42098 * 106.40145 * 1.46024 * 10 9 8 13 13 N 1.65606 * 107.21910 * 115.00206 * 10 9 8 14 14 C 1.46500 * 120.00055 * 64.99793 * 13 10 9 15 15 H 1.08997 * 109.41188 * 25.14187 * 14 13 10 16 16 C 1.52958 * 109.41180 * 145.00164 * 14 13 10 17 17 C 1.53229 * 109.40527 * 183.70416 * 16 14 13 18 18 C 1.51267 * 108.53414 * 305.37342 * 17 16 14 19 19 C 1.37880 * 120.84998 * 231.36499 * 18 17 16 20 20 N 1.31514 * 119.99671 * 0.02562 * 19 18 17 21 21 Si 1.86802 * 120.00066 * 180.02562 * 19 18 17 22 22 H 1.48499 * 109.47010 * 60.00146 * 21 19 18 23 23 H 1.48497 * 109.46987 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47056 * 300.00426 * 21 19 18 25 25 C 1.51267 * 118.30222 * 51.34714 * 18 17 16 26 26 C 1.52957 * 109.40989 * 265.35596 * 14 13 10 27 27 H 1.08998 * 109.47241 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46503 * 300.00697 * 1 2 3 29 29 H 1.08998 * 109.46697 * 60.00046 * 1 2 3 30 30 H 1.08001 * 120.02883 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.97060 * 179.74407 * 5 4 3 32 32 H 1.09001 * 109.47226 * 270.02278 * 7 6 5 33 33 H 1.09002 * 109.46752 * 30.02397 * 7 6 5 34 34 H 1.09001 * 109.47253 * 150.01767 * 7 6 5 35 35 H 1.08000 * 119.97860 * 179.97438 * 8 6 5 36 36 H 0.97002 * 119.99610 * 244.99753 * 13 10 9 37 37 H 1.09004 * 109.48239 * 303.68558 * 16 14 13 38 38 H 1.09007 * 109.48279 * 63.70799 * 16 14 13 39 39 H 1.08995 * 109.62518 * 65.08631 * 17 16 14 40 40 H 1.08998 * 109.62516 * 185.66131 * 17 16 14 41 41 H 0.97003 * 119.99603 * 180.02562 * 20 19 18 42 42 H 1.09008 * 109.62576 * 68.36271 * 25 18 17 43 43 H 1.08996 * 109.62910 * 188.93503 * 25 18 17 44 44 H 1.09002 * 109.48242 * 296.27087 * 26 14 13 45 45 H 1.08990 * 109.48276 * 56.32103 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3753 0.0044 5 6 1.9211 3.6047 -0.0015 6 6 3.3021 3.6756 -0.0068 7 6 3.9864 5.0183 -0.0138 8 6 4.0562 2.5169 -0.0057 9 6 3.4313 1.2847 0.0001 10 16 4.3929 -0.1917 0.0008 11 8 3.8520 -1.0235 -1.0165 12 8 5.7539 0.2160 0.0293 13 7 4.1056 -0.9633 1.4377 14 6 2.7683 -1.4817 1.7361 15 1 2.2406 -1.6810 0.8035 16 6 2.8930 -2.7789 2.5370 17 6 1.4985 -3.3698 2.7695 18 6 0.6321 -2.3153 3.4218 19 6 -0.0750 -2.5937 4.5723 20 7 -0.0009 -3.7886 5.1167 21 14 -1.1383 -1.2738 5.3576 22 1 -2.1799 -0.8383 4.3929 23 1 -1.7895 -1.8219 6.5744 24 1 -0.2913 -0.1121 5.7294 25 6 0.5617 -0.9473 2.7800 26 6 1.9902 -0.4442 2.5471 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5140 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 0.2130 2.3204 0.0082 31 1 1.3343 4.5113 -0.0023 32 1 4.1473 5.3388 -1.0431 33 1 3.3605 5.7477 0.5003 34 1 4.9464 4.9395 0.4965 35 1 5.1346 2.5749 -0.0103 36 1 4.8228 -1.0719 2.0817 37 1 3.5021 -3.4920 1.9814 38 1 3.3641 -2.5693 3.4975 39 1 1.0616 -3.6635 1.8151 40 1 1.5733 -4.2383 3.4238 41 1 -0.4987 -3.9846 5.9258 42 1 0.0380 -1.0168 1.8265 43 1 0.0345 -0.2594 3.4410 44 1 2.4823 -0.2899 3.5075 45 1 1.9592 0.4971 1.9987 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260300211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = -112.751003 kcal Electronic energy + Delta-G solvation = -29660.374278 eV Core-core repulsion = 25769.035362 eV Total energy + Delta-G solvation = -3891.338916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.50350 -39.33113 -38.52664 -38.13016 -36.92274 -35.38144 -33.22211 -32.99989 -32.33244 -31.43723 -28.92931 -28.53286 -26.88800 -24.42878 -23.86116 -23.18889 -22.57297 -21.27763 -20.37597 -19.51244 -18.82340 -17.88832 -17.71700 -17.47270 -17.14252 -16.81813 -16.23910 -15.89771 -15.47668 -15.34866 -15.02833 -14.93724 -14.59618 -14.25918 -14.08957 -13.96055 -13.91813 -13.41014 -13.28807 -13.20671 -13.12385 -13.07322 -13.04016 -12.74113 -12.70222 -12.57253 -12.45058 -12.29027 -12.00711 -11.88335 -11.69113 -11.60958 -11.27712 -10.86602 -10.62189 -10.48331 -10.42567 -10.07749 -9.19384 -8.11467 -6.03874 -0.56132 -0.16295 0.31332 1.41112 1.42755 1.50334 2.01599 2.19168 2.43885 2.46057 2.73571 3.16739 3.35588 3.78045 3.87778 4.04074 4.06384 4.23725 4.25579 4.34773 4.38991 4.41628 4.52916 4.58546 4.67361 4.79382 4.84201 4.88415 4.89025 4.94861 4.97633 5.07837 5.13855 5.16439 5.22251 5.28232 5.32508 5.47449 5.57018 5.66688 5.71837 5.73332 5.82593 5.89263 6.18336 6.22615 6.41643 7.01884 7.52948 8.99905 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013814 B = 0.004927 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.414080 B = 5681.228227 C = 6757.474860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.320 6.320 3 C 0.209 3.791 4 C -0.228 4.228 5 C -0.022 4.022 6 C -0.150 4.150 7 C -0.108 4.108 8 C -0.004 4.004 9 C -0.720 4.720 10 S 2.712 3.288 11 O -0.985 6.985 12 O -0.990 6.990 13 N -1.107 6.107 14 C 0.170 3.830 15 H 0.094 0.906 16 C -0.106 4.106 17 C 0.008 3.992 18 C -0.491 4.491 19 C 0.022 3.978 20 N -0.934 5.934 21 Si 0.939 3.061 22 H -0.259 1.259 23 H -0.301 1.301 24 H -0.269 1.269 25 C -0.022 4.022 26 C -0.114 4.114 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.150 0.850 36 H 0.421 0.579 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.005 0.995 40 H 0.026 0.974 41 H 0.260 0.740 42 H 0.053 0.947 43 H 0.024 0.976 44 H 0.041 0.959 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.000 17.866 -10.046 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.233 6.233 3 C 0.161 3.839 4 C -0.247 4.247 5 C -0.040 4.040 6 C -0.151 4.151 7 C -0.165 4.165 8 C -0.023 4.023 9 C -0.810 4.810 10 S 2.804 3.196 11 O -0.975 6.975 12 O -0.980 6.980 13 N -0.867 5.867 14 C 0.064 3.936 15 H 0.112 0.888 16 C -0.146 4.146 17 C -0.030 4.030 18 C -0.511 4.511 19 C -0.176 4.176 20 N -0.574 5.574 21 Si 0.766 3.234 22 H -0.183 1.183 23 H -0.228 1.228 24 H -0.195 1.195 25 C -0.059 4.059 26 C -0.153 4.153 27 H 0.128 0.872 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.178 0.822 31 H 0.184 0.816 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.168 0.832 36 H 0.256 0.744 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.023 0.977 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.060 0.940 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.427 17.271 -10.714 20.611 hybrid contribution -0.890 0.325 1.484 1.760 sum 2.538 17.596 -9.230 20.031 Atomic orbital electron populations 1.23574 0.75907 1.05787 1.02863 1.86296 1.24278 1.26061 1.86649 1.18517 0.90565 0.86148 0.88666 1.21681 1.01741 0.91774 1.09507 1.21565 0.94130 0.98070 0.90249 1.20282 0.94261 0.96291 1.04249 1.20806 1.00745 0.91511 1.03429 1.20880 1.00823 0.89782 0.90844 1.29906 1.04566 1.19377 1.27194 1.00926 0.72338 0.73535 0.72787 1.93542 1.80541 1.66700 1.56697 1.93503 1.33721 1.83813 1.86989 1.55425 1.19602 1.73275 1.38389 1.20762 0.80005 0.93590 0.99243 0.88846 1.21788 0.98957 0.95544 0.98315 1.19322 0.91831 0.96427 0.95408 1.20623 1.25406 0.96813 1.08219 1.25573 0.97810 0.96885 0.97305 1.69975 1.43489 1.22486 1.21433 0.85867 0.79754 0.79890 0.77889 1.18343 1.22789 1.19480 1.19970 0.93636 0.94093 0.98235 1.22055 0.97711 0.97085 0.98473 0.87150 0.90735 0.90035 0.82213 0.81620 0.90078 0.89743 0.91014 0.83202 0.74358 0.93268 0.93327 0.97683 0.95478 0.93040 0.92852 0.95747 0.94037 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 7.52 113.37 0.85 1.13 16 2 O -0.32 -9.58 4.38 -82.82 -0.36 -9.94 16 3 C 0.21 5.80 4.31 22.51 0.10 5.90 16 4 C -0.23 -4.80 9.04 22.37 0.20 -4.60 16 5 C -0.02 -0.38 9.69 22.25 0.22 -0.17 16 6 C -0.15 -2.84 5.88 -19.85 -0.12 -2.96 16 7 C -0.11 -1.31 10.01 71.24 0.71 -0.60 16 8 C 0.00 -0.10 9.20 22.25 0.20 0.11 16 9 C -0.72 -20.93 5.65 22.37 0.13 -20.80 16 10 S 2.71 89.55 5.45 -56.49 -0.31 89.25 16 11 O -0.98 -38.59 16.62 -122.84 -2.04 -40.63 16 12 O -0.99 -34.15 16.97 -128.00 -2.17 -36.32 16 13 N -1.11 -35.86 5.47 -169.51 -0.93 -36.79 16 14 C 0.17 6.31 1.93 44.96 0.09 6.39 16 15 H 0.09 3.63 5.41 -2.39 -0.01 3.62 16 16 C -0.11 -4.41 5.46 30.66 0.17 -4.25 16 17 C 0.01 0.41 5.97 30.11 0.18 0.59 16 18 C -0.49 -24.37 5.51 -16.17 -0.09 -24.46 16 19 C 0.02 1.17 5.46 84.66 0.46 1.63 16 20 N -0.93 -53.66 12.73 21.45 0.27 -53.38 16 21 Si 0.94 41.49 26.80 68.60 1.84 43.33 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 23 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 25 C -0.02 -0.88 4.88 30.11 0.15 -0.73 16 26 C -0.11 -4.21 4.54 30.66 0.14 -4.07 16 27 H 0.11 2.63 7.48 -2.39 -0.02 2.61 16 28 H 0.07 1.60 6.55 -2.39 -0.02 1.59 16 29 H 0.08 1.38 7.67 -2.39 -0.02 1.36 16 30 H 0.16 2.53 6.30 -2.91 -0.02 2.51 16 31 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.73 8.08 -2.39 -0.02 0.72 16 34 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 35 H 0.15 3.35 7.33 -2.91 -0.02 3.32 16 36 H 0.42 11.87 8.83 -96.74 -0.85 11.02 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.03 1.47 7.07 -2.39 -0.02 1.46 16 41 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.05 1.95 4.03 -2.38 -0.01 1.94 16 43 H 0.02 0.97 5.17 -2.39 -0.01 0.96 16 44 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.06 1.91 4.40 -2.39 -0.01 1.90 16 Total: -1.00 -69.33 348.28 -0.13 -69.45 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.18 Total: 21.92 kcal Atomic # 6 Polarization: -50.27 SS G_CDS: 3.39 Total: -46.88 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -0.65 Total: -90.17 kcal Atomic # 8 Polarization: -82.32 SS G_CDS: -4.58 Total: -86.89 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.84 Total: 43.33 kcal Atomic # 16 Polarization: 89.55 SS G_CDS: -0.31 Total: 89.25 kcal Total: -69.33 -0.13 -69.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260300211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.296 kcal (2) G-P(sol) polarization free energy of solvation -69.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds