Wall clock time and date at job start Sat Apr 11 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35907 * 116.99880 * 2 1 4 4 C 1.38753 * 120.05595 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94329 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05228 * 0.02562 * 5 4 3 7 7 S 1.76205 * 119.94050 * 179.97438 * 6 5 4 8 8 O 1.42101 * 106.40070 * 203.53566 * 7 6 5 9 9 O 1.42098 * 106.40228 * 336.45695 * 7 6 5 10 10 N 1.65603 * 107.21879 * 89.99504 * 7 6 5 11 11 C 1.46507 * 119.99845 * 64.99848 * 10 7 6 12 12 H 1.09001 * 109.41296 * 25.00200 * 11 10 7 13 13 C 1.52964 * 109.41191 * 144.85574 * 11 10 7 14 14 C 1.53224 * 109.40228 * 183.70271 * 13 11 10 15 15 C 1.51262 * 108.53986 * 305.37792 * 14 13 11 16 16 C 1.37881 * 120.84829 * 231.32577 * 15 14 13 17 17 N 1.31516 * 120.00088 * 359.97438 * 16 15 14 18 18 Si 1.86803 * 119.99852 * 179.97438 * 16 15 14 19 19 H 1.48497 * 109.47084 * 60.00097 * 18 16 15 20 20 H 1.48507 * 109.46781 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47284 * 299.99860 * 18 16 15 22 22 C 1.51272 * 118.30283 * 51.34714 * 15 14 13 23 23 C 1.52951 * 109.41354 * 265.14228 * 11 10 7 24 24 C 1.38248 * 120.11541 * 359.73639 * 6 5 4 25 25 C 1.38161 * 120.05216 * 0.51860 * 24 6 5 26 26 C 1.50703 * 120.02662 * 179.76580 * 25 24 6 27 27 H 1.08994 * 109.46897 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46983 * 299.99941 * 1 2 3 29 29 H 1.08999 * 109.46656 * 60.00304 * 1 2 3 30 30 H 1.08001 * 120.02929 * 0.02562 * 4 3 2 31 31 H 1.07994 * 119.97003 * 179.97438 * 5 4 3 32 32 H 0.97000 * 120.00293 * 245.00054 * 10 7 6 33 33 H 1.08996 * 109.48466 * 303.68833 * 13 11 10 34 34 H 1.08998 * 109.47415 * 63.72716 * 13 11 10 35 35 H 1.09001 * 109.62506 * 65.09451 * 14 13 11 36 36 H 1.08998 * 109.62367 * 185.65866 * 14 13 11 37 37 H 0.96998 * 120.00131 * 179.97438 * 17 16 15 38 38 H 1.09001 * 109.62280 * 68.36829 * 22 15 14 39 39 H 1.08998 * 109.62289 * 188.74810 * 22 15 14 40 40 H 1.08997 * 109.48563 * 296.27615 * 23 11 10 41 41 H 1.08999 * 109.48554 * 56.32044 * 23 11 10 42 42 H 1.08002 * 119.97244 * 180.25378 * 24 6 5 43 43 H 1.09002 * 109.47152 * 269.71921 * 26 25 24 44 44 H 1.09001 * 109.46980 * 149.72022 * 26 25 24 45 45 H 1.09004 * 109.47113 * 29.72003 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6758 0.0005 7 16 4.1019 5.2458 0.0005 8 8 5.3974 5.0360 -0.5444 9 8 3.1703 6.1708 -0.5434 10 7 4.3249 5.6823 1.5823 11 6 5.2157 4.8969 2.4403 12 1 5.9524 4.3826 1.8233 13 6 5.9332 5.8298 3.4174 14 6 6.9325 5.0218 4.2519 15 6 6.1947 3.8774 4.9105 16 6 6.3018 3.6545 6.2669 17 7 7.0533 4.4416 7.0054 18 14 5.3796 2.2344 7.0558 19 1 5.8243 0.9556 6.4459 20 1 5.6604 2.2109 8.5139 21 1 3.9213 2.4075 6.8348 22 6 5.3366 2.9833 4.0429 23 6 4.3949 3.8664 3.2173 24 6 4.0560 2.5171 0.0050 25 6 3.4312 1.2849 -0.0009 26 6 4.2538 0.0222 -0.0014 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 0.2128 2.3204 0.0014 31 1 1.3340 4.5114 0.0011 32 1 3.8658 6.4579 1.9408 33 1 6.4648 6.6010 2.8599 34 1 5.2022 6.2967 4.0774 35 1 7.7161 4.6280 3.6044 36 1 7.3729 5.6619 5.0164 37 1 7.1284 4.2851 7.9597 38 1 5.9724 2.4008 3.3762 39 1 4.7541 2.3114 4.6732 40 1 3.7011 4.3808 3.8822 41 1 3.8355 3.2451 2.5180 42 1 5.1345 2.5752 0.0087 43 1 4.4518 -0.2821 -1.0292 44 1 3.7066 -0.7682 0.5125 45 1 5.1980 0.2034 0.5122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260640141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:24 Heat of formation + Delta-G solvation = -106.571005 kcal Electronic energy + Delta-G solvation = -28533.304427 eV Core-core repulsion = 24642.233496 eV Total energy + Delta-G solvation = -3891.070931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.51599 -37.83854 -37.51026 -36.93584 -35.66047 -33.70666 -33.07012 -31.28693 -30.64465 -29.64982 -27.95460 -26.94626 -26.86421 -22.84625 -22.13874 -22.10031 -21.49313 -19.68171 -19.09369 -18.32565 -17.56441 -17.00472 -16.77840 -16.13276 -16.07345 -15.52972 -14.80198 -14.64602 -14.48773 -14.11530 -13.76875 -13.48477 -13.33895 -13.21712 -12.96651 -12.54929 -12.42727 -12.38165 -12.32844 -12.17542 -12.08901 -11.91132 -11.82460 -11.58393 -11.43326 -11.13740 -11.09275 -10.89951 -10.76484 -10.60879 -10.27796 -10.06824 -9.85823 -9.23481 -9.11678 -8.95689 -8.63178 -8.51005 -8.46434 -6.13721 -4.04628 0.57024 0.86484 1.13047 2.89609 3.12585 3.25238 3.32659 3.33278 3.44742 3.95569 4.34837 4.36365 4.50202 4.63129 4.79480 4.81466 5.05367 5.09379 5.12612 5.15219 5.33792 5.38115 5.41864 5.61275 5.68453 5.75631 5.86912 5.93392 6.01228 6.06484 6.07516 6.15749 6.44663 6.50434 6.53436 6.70152 6.78183 6.96781 6.98064 7.02431 7.09858 7.29848 7.39691 7.61238 7.71632 7.80910 8.34361 8.93035 9.50807 10.95910 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010322 B = 0.004729 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.905797 B = 5919.546082 C = 7761.577775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.176 3.824 4 C -0.228 4.228 5 C 0.016 3.984 6 C -0.703 4.703 7 S 2.695 3.305 8 O -0.960 6.960 9 O -0.974 6.974 10 N -1.111 6.111 11 C 0.158 3.842 12 H 0.082 0.918 13 C -0.109 4.109 14 C 0.010 3.990 15 C -0.490 4.490 16 C 0.078 3.922 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.292 1.292 21 H -0.275 1.275 22 C -0.009 4.009 23 C -0.125 4.125 24 C 0.022 3.978 25 C -0.134 4.134 26 C -0.107 4.107 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.414 0.586 33 H 0.040 0.960 34 H 0.056 0.944 35 H 0.008 0.992 36 H 0.061 0.939 37 H 0.265 0.735 38 H 0.020 0.980 39 H 0.026 0.974 40 H 0.058 0.942 41 H 0.037 0.963 42 H 0.148 0.852 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.193 -5.689 -13.245 18.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.130 3.870 4 C -0.247 4.247 5 C -0.003 4.003 6 C -0.790 4.790 7 S 2.785 3.215 8 O -0.950 6.950 9 O -0.964 6.964 10 N -0.871 5.871 11 C 0.053 3.947 12 H 0.100 0.900 13 C -0.149 4.149 14 C -0.028 4.028 15 C -0.509 4.509 16 C -0.125 4.125 17 N -0.526 5.526 18 Si 0.717 3.283 19 H -0.200 1.200 20 H -0.219 1.219 21 H -0.201 1.201 22 C -0.047 4.047 23 C -0.165 4.165 24 C 0.003 3.997 25 C -0.135 4.135 26 C -0.164 4.164 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.153 0.847 31 H 0.158 0.842 32 H 0.248 0.752 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.026 0.974 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.044 0.956 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.165 0.835 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.710 -5.541 -13.874 18.982 hybrid contribution -1.542 -0.932 1.103 2.113 sum -13.252 -6.473 -12.772 19.510 Atomic orbital electron populations 1.23142 0.78033 1.04246 1.01706 1.86100 1.21688 1.26783 1.87581 1.19097 0.92001 0.84209 0.91712 1.21271 1.00240 0.92233 1.10994 1.20615 0.92280 0.98013 0.89428 1.30856 1.04989 1.21635 1.21475 1.01702 0.73655 0.73336 0.72819 1.93578 1.38542 1.86183 1.76739 1.93546 1.64577 1.61107 1.77148 1.55675 1.60043 1.40726 1.30614 1.20930 0.90098 0.92142 0.91575 0.90009 1.21900 0.99452 0.96992 0.96563 1.19382 0.93206 0.95178 0.95002 1.20017 1.27070 1.12079 0.91741 1.24824 0.95076 0.95956 0.96648 1.69815 1.38646 1.37718 1.06389 0.86692 0.80473 0.83196 0.77892 1.20008 1.21861 1.20094 1.19596 0.94493 0.94918 0.95701 1.22121 0.98636 0.97397 0.98341 1.20698 1.00168 0.89774 0.89084 1.19354 0.90632 0.96517 1.07038 1.20650 0.99312 0.93960 1.02429 0.87967 0.92235 0.92378 0.84728 0.84180 0.75155 0.94167 0.92530 0.97370 0.92038 0.92488 0.96153 0.95585 0.92302 0.94413 0.83480 0.91267 0.91022 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.37 9.54 -19.45 -0.19 -3.56 16 3 C 0.18 2.18 6.66 -39.22 -0.26 1.92 16 4 C -0.23 -2.60 9.04 -39.43 -0.36 -2.96 16 5 C 0.02 0.20 9.52 -39.61 -0.38 -0.18 16 6 C -0.70 -9.91 4.97 -39.56 -0.20 -10.11 16 7 S 2.70 41.17 5.72 -107.50 -0.61 40.55 16 8 O -0.96 -17.14 16.62 -57.17 -0.95 -18.09 16 9 O -0.97 -16.06 17.28 -57.17 -0.99 -17.05 16 10 N -1.11 -16.74 5.47 -4.92 -0.03 -16.77 16 11 C 0.16 2.84 2.68 -67.97 -0.18 2.65 16 12 H 0.08 1.50 7.50 -51.93 -0.39 1.11 16 13 C -0.11 -2.17 5.46 -26.63 -0.15 -2.32 16 14 C 0.01 0.25 5.97 -27.49 -0.16 0.09 16 15 C -0.49 -12.32 5.51 -98.92 -0.55 -12.86 16 16 C 0.08 2.06 5.46 -17.82 -0.10 1.97 16 17 N -0.89 -24.85 12.73 55.43 0.71 -24.14 16 18 Si 0.89 20.74 26.80 -169.99 -4.56 16.18 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 C -0.01 -0.19 5.60 -27.48 -0.15 -0.35 16 23 C -0.13 -2.36 5.54 -26.63 -0.15 -2.51 16 24 C 0.02 0.31 8.28 -39.61 -0.33 -0.02 16 25 C -0.13 -1.76 5.89 -104.47 -0.62 -2.38 16 26 C -0.11 -1.19 9.79 36.01 0.35 -0.84 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 29 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 30 H 0.13 1.14 6.30 -52.49 -0.33 0.81 16 31 H 0.14 1.52 7.61 -52.49 -0.40 1.12 16 32 H 0.41 5.39 8.84 -34.48 -0.30 5.08 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 37 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.03 0.57 5.17 -51.93 -0.27 0.30 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.04 0.64 6.11 -51.93 -0.32 0.32 16 42 H 0.15 1.97 7.62 -52.49 -0.40 1.57 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.78 7.53 -51.93 -0.39 0.39 16 45 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -31.75 368.11 -9.77 -41.52 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.48 Total: 2.55 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: -2.23 Total: -26.74 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.68 Total: -40.91 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -2.12 Total: -38.70 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.56 Total: 16.18 kcal Atomic # 16 Polarization: 41.17 SS G_CDS: -0.61 Total: 40.55 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.75 -9.77 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260640141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.052 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds