Wall clock time and date at job start Sat Apr 11 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99740 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46926 * 60.00512 * 8 6 4 10 10 H 1.48506 * 109.46961 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47227 * 300.00303 * 8 6 4 12 12 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 13 13 N 1.46504 * 109.46883 * 300.00241 * 12 2 1 14 14 C 1.34775 * 119.99531 * 179.97438 * 13 12 2 15 15 O 1.21552 * 120.00294 * 0.02562 * 14 13 12 16 16 C 1.47850 * 119.99774 * 179.97438 * 14 13 12 17 17 C 1.39597 * 120.14426 * 359.72852 * 16 14 13 18 18 C 1.37934 * 119.85151 * 179.78667 * 17 16 14 19 19 C 1.38386 * 120.14385 * 0.48949 * 18 17 16 20 20 C 1.38341 * 120.29363 * 359.73778 * 19 18 17 21 21 C 1.50693 * 119.92398 * 180.02562 * 20 19 18 22 22 S 1.81397 * 109.47276 * 270.02246 * 21 20 19 23 23 C 1.81405 * 101.92347 * 180.02562 * 22 21 20 24 24 O 1.42098 * 108.57929 * 294.49245 * 22 21 20 25 25 O 1.42103 * 108.57734 * 65.51886 * 22 21 20 26 26 C 1.37976 * 120.14123 * 0.02562 * 20 19 18 27 27 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 28 28 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 29 29 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 32 32 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 33 33 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47002 * 59.99738 * 12 2 1 35 35 H 1.08993 * 109.46955 * 180.02562 * 12 2 1 36 36 H 0.96992 * 119.99966 * 359.97438 * 13 12 2 37 37 H 1.07995 * 120.07066 * 0.02562 * 17 16 14 38 38 H 1.07997 * 119.92910 * 180.20795 * 18 17 16 39 39 H 1.08000 * 119.85317 * 179.76723 * 19 18 17 40 40 H 1.08996 * 109.47888 * 30.02798 * 21 20 19 41 41 H 1.09003 * 109.46999 * 150.02481 * 21 20 19 42 42 H 1.08999 * 109.46587 * 60.00125 * 23 22 21 43 43 H 1.09003 * 109.46871 * 180.02562 * 23 22 21 44 44 H 1.09000 * 109.46887 * 300.00348 * 23 22 21 45 45 H 1.08003 * 120.06657 * 179.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.8258 -2.5205 -4.0075 10 1 1.8259 -0.4209 -5.2204 11 1 3.8063 -1.1212 -4.0080 12 6 2.0400 -0.7212 1.2494 13 7 1.5516 -0.0304 2.4455 14 6 1.8768 -0.4911 3.6696 15 8 2.5756 -1.4794 3.7812 16 6 1.3844 0.2062 4.8767 17 6 0.5871 1.3454 4.7520 18 6 0.1274 1.9887 5.8822 19 6 0.4632 1.5131 7.1377 20 6 1.2568 0.3875 7.2682 21 6 1.6169 -0.1235 8.6393 22 16 3.1588 0.6574 9.1900 23 6 3.3942 -0.0905 10.8259 24 8 4.2130 0.2269 8.3400 25 8 2.9267 2.0493 9.3572 26 6 1.7192 -0.2682 6.1457 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 0.7095 1.1615 -3.4844 34 1 1.6766 -1.7488 1.2494 35 1 3.1299 -0.7208 1.2495 36 1 0.9942 0.7583 2.3564 37 1 0.3278 1.7198 3.7728 38 1 -0.4922 2.8681 5.7872 39 1 0.1038 2.0226 8.0195 40 1 0.8170 0.1185 9.3391 41 1 1.7509 -1.2046 8.6006 42 1 3.4760 -1.1724 10.7223 43 1 4.3058 0.3018 11.2769 44 1 2.5421 0.1503 11.4615 45 1 2.3390 -1.1466 6.2490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361496081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:35 Heat of formation + Delta-G solvation = -84.612933 kcal Electronic energy + Delta-G solvation = -26925.893910 eV Core-core repulsion = 23035.775152 eV Total energy + Delta-G solvation = -3890.118758 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.16319 -38.50033 -37.29479 -36.34589 -36.30864 -33.80613 -33.01558 -31.38724 -30.68281 -30.12313 -27.69440 -25.81412 -25.73575 -25.14497 -23.27655 -22.19154 -20.11277 -19.22681 -18.87049 -17.80119 -17.04986 -16.50382 -16.33581 -16.30959 -15.74083 -15.65600 -14.89263 -14.78911 -14.66533 -14.39080 -13.86068 -13.67953 -13.62536 -13.23861 -13.14165 -13.07142 -12.89673 -12.58983 -12.37559 -12.28898 -12.19368 -11.91401 -11.55284 -11.43591 -11.38584 -11.19159 -11.10960 -10.84920 -10.73069 -10.39379 -10.20756 -9.67522 -9.64389 -9.28371 -9.14218 -9.02156 -8.80545 -8.45751 -8.31664 -6.02073 -4.12093 -0.51610 0.76381 1.11994 2.33778 2.97072 3.25425 3.30797 3.34939 3.38335 3.55702 3.64340 3.85260 4.02967 4.19953 4.32698 4.40395 4.56309 4.72213 4.77941 4.89423 5.04911 5.10012 5.16305 5.24688 5.30842 5.56634 5.74767 6.09442 6.14555 6.15951 6.25878 6.32064 6.49229 6.62214 6.76161 6.80712 6.92805 6.99143 7.01256 7.34390 7.54798 7.69170 8.00259 8.00489 8.13981 8.37806 8.63203 8.88200 9.53637 10.99394 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.026905 B = 0.002208 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.462405 B =12676.677207 C =13147.567538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.709 5.709 14 C 0.545 3.455 15 O -0.545 6.545 16 C -0.123 4.123 17 C -0.075 4.075 18 C -0.124 4.124 19 C -0.083 4.083 20 C -0.107 4.107 21 C -0.561 4.561 22 S 2.412 3.588 23 C -0.660 4.660 24 O -0.926 6.926 25 O -0.933 6.933 26 C -0.045 4.045 27 H 0.005 0.995 28 H 0.086 0.914 29 H 0.027 0.973 30 H 0.028 0.972 31 H 0.086 0.914 32 H 0.005 0.995 33 H 0.260 0.740 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.397 0.603 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 1.717 26.304 26.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.360 5.360 14 C 0.331 3.669 15 O -0.424 6.424 16 C -0.126 4.126 17 C -0.094 4.094 18 C -0.142 4.142 19 C -0.102 4.102 20 C -0.109 4.109 21 C -0.688 4.688 22 S 2.594 3.406 23 C -0.808 4.808 24 O -0.923 6.923 25 O -0.931 6.931 26 C -0.065 4.065 27 H 0.024 0.976 28 H 0.105 0.895 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.024 0.976 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.234 0.766 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.099 1.727 25.784 25.927 hybrid contribution -0.502 -0.704 -0.381 0.945 sum -2.600 1.023 25.403 25.556 Atomic orbital electron populations 1.21840 0.97755 0.99233 1.00057 1.18365 0.92803 0.92803 0.90537 1.21844 0.98742 0.98297 1.00068 1.20934 1.31544 1.12130 0.89837 0.92442 1.24880 0.94853 0.94933 0.98857 1.69790 1.36635 1.22706 1.23345 0.86618 0.79256 0.79763 0.82126 1.20296 1.21346 1.20262 1.21788 0.98374 0.95850 0.83138 1.46256 1.52211 1.31619 1.05870 1.18197 0.80902 0.84339 0.83426 1.90747 1.38408 1.26378 1.86874 1.20161 1.00900 0.97337 0.94183 1.21548 0.94650 0.93601 0.99648 1.21114 1.00763 1.00514 0.91773 1.21279 0.95825 0.94670 0.98449 1.18765 1.02537 0.97886 0.91684 1.29305 1.22081 1.13758 1.03703 1.08323 0.77630 0.76777 0.77849 1.30324 1.11968 1.14482 1.24074 1.93647 1.51783 1.83200 1.63719 1.93601 1.85567 1.27896 1.85993 1.21236 0.96091 0.98843 0.90362 0.97607 0.89510 0.95371 0.95306 0.89508 0.97575 0.92940 0.92460 0.92409 0.76611 0.84861 0.84685 0.84924 0.83984 0.83834 0.85214 0.85167 0.85366 0.83896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 4 C -0.51 -13.24 8.01 -34.44 -0.28 -13.51 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.52 9.35 55.43 0.52 -23.00 16 8 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 C 0.13 2.81 4.50 -4.04 -0.02 2.79 16 13 N -0.71 -12.97 4.91 -61.25 -0.30 -13.27 16 14 C 0.55 10.04 7.77 -12.33 -0.10 9.95 16 15 O -0.54 -11.80 16.35 5.32 0.09 -11.71 16 16 C -0.12 -1.82 5.87 -104.97 -0.62 -2.44 16 17 C -0.08 -0.91 9.54 -39.19 -0.37 -1.28 16 18 C -0.12 -1.23 10.03 -39.64 -0.40 -1.63 16 19 C -0.08 -0.79 9.69 -39.49 -0.38 -1.17 16 20 C -0.11 -1.11 5.13 -104.68 -0.54 -1.64 16 21 C -0.56 -3.25 5.93 36.00 0.21 -3.04 16 22 S 2.41 18.10 5.34 -107.50 -0.57 17.53 16 23 C -0.66 -2.01 10.62 101.05 1.07 -0.94 16 24 O -0.93 -11.48 18.10 -57.83 -1.05 -12.52 16 25 O -0.93 -10.16 18.10 -57.83 -1.05 -11.20 16 26 C -0.05 -0.61 9.24 -39.19 -0.36 -0.97 16 27 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 28 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 33 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.40 6.46 4.20 -40.82 -0.17 6.29 16 37 H 0.13 1.44 6.41 -52.49 -0.34 1.10 16 38 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.14 0.31 8.08 -51.93 -0.42 -0.11 16 41 H 0.14 0.51 8.08 -51.92 -0.42 0.09 16 42 H 0.13 0.18 8.14 -51.92 -0.42 -0.25 16 43 H 0.13 0.38 8.14 -51.92 -0.42 -0.05 16 44 H 0.13 0.10 8.14 -51.92 -0.42 -0.32 16 45 H 0.14 1.92 7.65 -52.48 -0.40 1.52 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -35.87 380.61 -9.43 -45.30 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.44 Total: 3.77 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -1.34 Total: -16.34 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.22 Total: -36.28 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -2.01 Total: -35.44 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 18.10 SS G_CDS: -0.57 Total: 17.53 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.87 -9.43 -45.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361496081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.318 kcal (2) G-P(sol) polarization free energy of solvation -35.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds